ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550411.1| Oryza sativa (japonica cultivar-group), mRNA 76 2e-10
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
3dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
4dbj|AK070335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
5ref|NM_193117.1| Oryza sativa (japonica cultivar-group), mRNA 70 9e-09
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
7dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
8dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
9ref|XM_479675.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
10emb|AL121763.25|HSJ914M10 Human DNA sequence from clone RP5-914M... 42 2.1
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
12dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
13dbj|AK101543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
14dbj|AK066589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
15gb|AC113961.14| Mus musculus chromosome 19, clone RP23-18G1, com... 40 8.4
16gb|AC130721.3| Mus musculus BAC clone RP24-333B3 from chromosome... 40 8.4
17emb|AL512503.14| Human DNA sequence from clone RP11-323K8 on chr... 40 8.4
18gb|AC026992.12| Homo sapiens chromosome 15, clone RP11-352D13, c... 40 8.4
19dbj|AK140700.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 8.4
20gb|AC108043.3| Homo sapiens BAC clone RP11-270L13 from 4, comple... 40 8.4
21dbj|AK054477.1| Mus musculus 2 days pregnant adult female ovary ... 40 8.4
22gb|AY695435.1| Physaria fendleri 3-ketoacyl-CoA synthase (KCS45)... 40 8.4
23gb|AC157914.4| Mus musculus chromosome 19, clone RP24-284E14, co... 40 8.4
24gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thali... 40 8.4 
>ref|XM_550411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2034

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    gctgctattgcctccttggntgctcaccagcaaacaagtaaccaaccgaaggtctcaaat 60
            ||||||||||| ||| ||  |||||  || ||| |||||| ||| |||||||| |||| |
Sbjct: 1299 gctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaact 1358

                                                     
Query: 61   ccatcagtttgggatgcagaagaaacttgtcatgcatttcc 101
            |||||  ||||||||||||||||||| || |||||||||||
Sbjct: 1359 ccatccctttgggatgcagaagaaacgtgccatgcatttcc 1399



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                        
Query: 346  cttttgagtggaactgacagtttaggtctcagcggcttcctagcaaacagcttggatgca 405
            ||||||||||| || ||||||||| || | ||||  || || ||||||||||||||||||
Sbjct: 1695 cttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgca 1754

                               
Query: 406  tttccgaagttcactgttt 424
            || | ||| ||| ||||||
Sbjct: 1755 ttccagaaattctctgttt 1773
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                           
Query: 1       gctgctattgcctccttggntgctcaccagcaaacaagtaaccaaccgaaggtctcaaat 60
               ||||||||||| ||| ||  |||||  || ||| |||||| ||| |||||||| |||| |
Sbjct: 4322657 gctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaact 4322598

                                                        
Query: 61      ccatcagtttgggatgcagaagaaacttgtcatgcatttcc 101
               |||||  ||||||||||||||||||| || |||||||||||
Sbjct: 4322597 ccatccctttgggatgcagaagaaacgtgccatgcatttcc 4322557



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                           
Query: 346     cttttgagtggaactgacagtttaggtctcagcggcttcctagcaaacagcttggatgca 405
               ||||||||||| || ||||||||| || | ||||  || || ||||||||||||||||||
Sbjct: 4322075 cttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgca 4322016

                                  
Query: 406     tttccgaagttcactgttt 424
               || | ||| ||| ||||||
Sbjct: 4322015 ttccagaaattctctgttt 4321997
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                          
Query: 1      gctgctattgcctccttggntgctcaccagcaaacaagtaaccaaccgaaggtctcaaat 60
              ||||||||||| ||| ||  |||||  || ||| |||||| ||| |||||||| |||| |
Sbjct: 102427 gctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaact 102368

                                                       
Query: 61     ccatcagtttgggatgcagaagaaacttgtcatgcatttcc 101
              |||||  ||||||||||||||||||| || |||||||||||
Sbjct: 102367 ccatccctttgggatgcagaagaaacgtgccatgcatttcc 102327



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                          
Query: 346    cttttgagtggaactgacagtttaggtctcagcggcttcctagcaaacagcttggatgca 405
              ||||||||||| || ||||||||| || | ||||  || || ||||||||||||||||||
Sbjct: 101845 cttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgca 101786

                                 
Query: 406    tttccgaagttcactgttt 424
              || | ||| ||| ||||||
Sbjct: 101785 ttccagaaattctctgttt 101767
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>dbj|AK070335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049O12, full
            insert sequence
          Length = 2035

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    gctgctattgcctccttggntgctcaccagcaaacaagtaaccaaccgaaggtctcaaat 60
            ||||||||||| ||| ||  |||||  || ||| |||||| ||| |||||||| |||| |
Sbjct: 1299 gctgctattgcttccctgattgctcggcaacaagcaagtagccagccgaaggtgtcaact 1358

                                                     
Query: 61   ccatcagtttgggatgcagaagaaacttgtcatgcatttcc 101
            |||||  ||||||||||||||||||| || |||||||||||
Sbjct: 1359 ccatccctttgggatgcagaagaaacgtgccatgcatttcc 1399



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                        
Query: 346  cttttgagtggaactgacagtttaggtctcagcggcttcctagcaaacagcttggatgca 405
            ||||||||||| || ||||||||| || | ||||  || || ||||||||||||||||||
Sbjct: 1695 cttttgagtggcaccgacagtttaagtgtgagcgatttacttgcaaacagcttggatgca 1754

                               
Query: 406  tttccgaagttcactgttt 424
            || | ||| ||| ||||||
Sbjct: 1755 ttccagaaattctctgttt 1773
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>ref|NM_193117.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1167

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                       
Query: 35  caagtaaccaaccgaaggtctcaaatccatcagtttgggatgcagaagaaacttgtcatg 94
           |||||||||||  |||||| ||||| |||||  |||||||||| |||||| |||||||||
Sbjct: 776 caagtaaccaaatgaaggtgtcaaacccatccctttgggatgctgaagaagcttgtcatg 835

                  
Query: 95  catttcc 101
           |||||||
Sbjct: 836 catttcc 842



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                        
Query: 313  ggtgagccagagcttggggcatttgactccaggcttttgagtggaactgacagtttaggt 372
            ||||||||||||||||| || | |  ||| || ||||||||||| || ||||||||||| 
Sbjct: 1051 ggtgagccagagcttggagcgtattgctctagacttttgagtggtacagacagtttaggg 1110

                                                                
Query: 373  ctcagcggcttcctagcaaacagcttggatgcatttccgaagttcactgttt 424
            || || || || ||  ||||||||||||||||||| | ||| ||| ||||||
Sbjct: 1111 ctaagtggtttactgtcaaacagcttggatgcattccagaaattctctgttt 1162
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                            
Query: 35       caagtaaccaaccgaaggtctcaaatccatcagtttgggatgcagaagaaacttgtcatg 94
                |||||||||||  |||||| ||||| |||||  |||||||||| |||||| |||||||||
Sbjct: 26260210 caagtaaccaaatgaaggtgtcaaacccatccctttgggatgctgaagaagcttgtcatg 26260151

                       
Query: 95       catttcc 101
                |||||||
Sbjct: 26260150 catttcc 26260144



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Minus

                                                                            
Query: 313      ggtgagccagagcttggggcatttgactccaggcttttgagtggaactgacagtttaggt 372
                ||||||||||||||||| || | |  ||| || ||||||||||| || ||||||||||| 
Sbjct: 26259730 ggtgagccagagcttggagcgtattgctctagacttttgagtggtacagacagtttaggg 26259671

                                                                    
Query: 373      ctcagcggcttcctagcaaacagcttggatgcatttccgaagttcactgttt 424
                || || || || ||  ||||||||||||||||||| | ||| ||| ||||||
Sbjct: 26259670 ctaagtggtttactgtcaaacagcttggatgcattccagaaattctctgttt 26259619
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                         
Query: 35    caagtaaccaaccgaaggtctcaaatccatcagtttgggatgcagaagaaacttgtcatg 94
             |||||||||||  |||||| ||||| |||||  |||||||||| |||||| |||||||||
Sbjct: 34838 caagtaaccaaatgaaggtgtcaaacccatccctttgggatgctgaagaagcttgtcatg 34779

                    
Query: 95    catttcc 101
             |||||||
Sbjct: 34778 catttcc 34772



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Minus

                                                                         
Query: 313   ggtgagccagagcttggggcatttgactccaggcttttgagtggaactgacagtttaggt 372
             ||||||||||||||||| || | |  ||| || ||||||||||| || ||||||||||| 
Sbjct: 34358 ggtgagccagagcttggagcgtattgctctagacttttgagtggtacagacagtttaggg 34299

                                                                 
Query: 373   ctcagcggcttcctagcaaacagcttggatgcatttccgaagttcactgttt 424
             || || || || ||  ||||||||||||||||||| | ||| ||| ||||||
Sbjct: 34298 ctaagtggtttactgtcaaacagcttggatgcattccagaaattctctgttt 34247
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E12
          Length = 152448

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                          
Query: 35     caagtaaccaaccgaaggtctcaaatccatcagtttgggatgcagaagaaacttgtcatg 94
              |||||||||||  |||||| ||||| |||||  |||||||||| |||||| |||||||||
Sbjct: 152068 caagtaaccaaatgaaggtgtcaaacccatccctttgggatgctgaagaagcttgtcatg 152009

                     
Query: 95     catttcc 101
              |||||||
Sbjct: 152008 catttcc 152002



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 92/112 (82%)
 Strand = Plus / Minus

                                                                          
Query: 313    ggtgagccagagcttggggcatttgactccaggcttttgagtggaactgacagtttaggt 372
              ||||||||||||||||| || | |  ||| || ||||||||||| || ||||||||||| 
Sbjct: 151588 ggtgagccagagcttggagcgtattgctctagacttttgagtggtacagacagtttaggg 151529

                                                                  
Query: 373    ctcagcggcttcctagcaaacagcttggatgcatttccgaagttcactgttt 424
              || || || || ||  ||||||||||||||||||| | ||| ||| ||||||
Sbjct: 151528 ctaagtggtttactgtcaaacagcttggatgcattccagaaattctctgttt 151477
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>ref|XM_479675.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2263

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 410  cgaagttcactgtttcatgag 430
            |||||||||||||||||||||
Sbjct: 1842 cgaagttcactgtttcatgag 1862
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>emb|AL121763.25|HSJ914M10 Human DNA sequence from clone RP5-914M10 on chromosome 20q12 Contains
             part of the PTPRT gene for protein tyrosine phosphatase
             receptor type T, ESTs, STSs and GSSs, complete sequence
          Length = 123988

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 416   tcactgtttcatgaggctcagaaat 440
             |||||||||||| ||||||||||||
Sbjct: 34704 tcactgtttcattaggctcagaaat 34680
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 410    cgaagttcactgtttcatgag 430
              |||||||||||||||||||||
Sbjct: 225547 cgaagttcactgtttcatgag 225567
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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0015C07
          Length = 149079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 410    cgaagttcactgtttcatgag 430
              |||||||||||||||||||||
Sbjct: 140882 cgaagttcactgtttcatgag 140902
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>dbj|AK101543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048I07, full
            insert sequence
          Length = 2262

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 410  cgaagttcactgtttcatgag 430
            |||||||||||||||||||||
Sbjct: 1842 cgaagttcactgtttcatgag 1862
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>dbj|AK066589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A02, full
            insert sequence
          Length = 2673

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 410  cgaagttcactgtttcatgag 430
            |||||||||||||||||||||
Sbjct: 2192 cgaagttcactgtttcatgag 2212
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>gb|AC113961.14| Mus musculus chromosome 19, clone RP23-18G1, complete sequence
          Length = 256791

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   ttttgagtggaactgacagt 366
             ||||||||||||||||||||
Sbjct: 46084 ttttgagtggaactgacagt 46103
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>gb|AC130721.3| Mus musculus BAC clone RP24-333B3 from chromosome 6, complete sequence
          Length = 149502

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 463   tagatcctgtaaagatcatcgtct 486
             ||||||||||||||||||| ||||
Sbjct: 52897 tagatcctgtaaagatcatggtct 52874
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>emb|AL512503.14| Human DNA sequence from clone RP11-323K8 on chromosome 1 Contains part
             of the NOTCH2 gene for Notch homolog 2 (Drosophila),
             complete sequence
          Length = 109612

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 452   atctgaagttatagatcctgtaaa 475
             ||||||||||||| ||||||||||
Sbjct: 16781 atctgaagttatatatcctgtaaa 16804
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>gb|AC026992.12| Homo sapiens chromosome 15, clone RP11-352D13, complete sequence
          Length = 177902

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    tgccaatgcctgaatccacc 312
              ||||||||||||||||||||
Sbjct: 169632 tgccaatgcctgaatccacc 169613
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>dbj|AK140700.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930096G07
            product:unclassifiable, full insert sequence
          Length = 4704

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 463  tagatcctgtaaagatcatcgtct 486
            ||||||||||||||||||| ||||
Sbjct: 4172 tagatcctgtaaagatcatggtct 4195
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>gb|AC108043.3| Homo sapiens BAC clone RP11-270L13 from 4, complete sequence
          Length = 138020

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   gagtggaactgacagtttag 370
             ||||||||||||||||||||
Sbjct: 52163 gagtggaactgacagtttag 52144
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>dbj|AK054477.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330029M15
           product:unclassifiable, full insert sequence
          Length = 2261

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 ttttgagtggaactgacagt 366
           ||||||||||||||||||||
Sbjct: 469 ttttgagtggaactgacagt 450
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>gb|AY695435.1| Physaria fendleri 3-ketoacyl-CoA synthase (KCS45) gene, complete cds
          Length = 4553

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  ttgcttcaagaaccattact 512
            ||||||||||||||||||||
Sbjct: 2014 ttgcttcaagaaccattact 2033
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>gb|AC157914.4| Mus musculus chromosome 19, clone RP24-284E14, complete sequence
          Length = 166967

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ttttgagtggaactgacagt 366
             ||||||||||||||||||||
Sbjct: 23469 ttttgagtggaactgacagt 23450
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>gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 100079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 472   taaagatcatcgtctggtttcttg 495
             ||||||||||| ||||||||||||
Sbjct: 91396 taaagatcatcttctggtttcttg 91373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,105,480
Number of Sequences: 3902068
Number of extensions: 5105480
Number of successful extensions: 89583
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89463
Number of HSP's gapped (non-prelim): 116
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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