>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting|
           protein) (RING finger protein 90)
          Length = 511

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +2

Query: 80  DQKIQASQDMMA*KQNVCNGGHEHFKIFNQQEKM*LREILSKFHAGHDQIGATVQQLRA 256
           D+ +Q +++++  +  V     E  ++F   EK   +E+L +  A  +++GA  Q LRA
Sbjct: 167 DEAVQEAKELLESRLRVLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRA 225

>RL103_ORYSA (Q40649) 60S ribosomal protein L10-3 (QM/R22)|
          Length = 219

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +1

Query: 10  MGSRDSTRQYKQ*THREHLQRSY--GSKDTSIARYD-GMKAKCVQRRSRALQNIQPAREN 180
           MG R + R Y+Q  ++ + +  Y  G  D  I  YD GMK K V   S  +  +   +EN
Sbjct: 1   MGRRPA-RCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKEN 59

Query: 181 VTTR--DSKQVSCRTRSNRSYG 240
           VT+   ++ +++C     +S G
Sbjct: 60  VTSEALEAARIACNKYMTKSAG 81

>VE2_HPV49 (P36795) Regulatory protein E2|
          Length = 488

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 76  YGSKDTSIARYDGMKAKCVQRRSRALQNIQPARENVTTRDSKQVSCRTRSNR-------S 234
           YG KD+S       + +  +RRSR+    +  RE  T+R  K    R+RS         S
Sbjct: 261 YGRKDSSPTAASNSRKEVSRRRSRSRTRTR-RREASTSRSQKASRSRSRSRSTSRGSRGS 319

Query: 235 YGSTTTSK 258
            GS TTS+
Sbjct: 320 GGSVTTSR 327

>RIF1_HUMAN (Q5UIP0) Telomere-associated protein RIF1 (Rap1-interacting factor 1|
            homolog)
          Length = 2472

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 24/98 (24%), Positives = 44/98 (44%)
 Frame = +2

Query: 53   IENISNGATDQKIQASQDMMA*KQNVCNGGHEHFKIFNQQEKM*LREILSKFHAGHDQIG 232
            IEN  + +++ K + S+   + K    N  +E   I +Q+EK+  +E +   +  HD   
Sbjct: 1549 IENSESDSSEAKEEGSRKKRSGKWK--NKSNESVDIQDQEEKVVKQECIKAENQSHDYKA 1606

Query: 233  ATVQQLRAKQEIFTICQKQPHGSLYASQLRLHNSDKLK 346
             + + +  K     IC+KQ   +    Q     SD L+
Sbjct: 1607 TSEEDVSIKS---PICEKQDESNTVICQDSTVTSDLLQ 1641

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 27/83 (32%), Positives = 42/83 (50%)
 Frame = +1

Query: 40  KQ*THREHLQRSYGSKDTSIARYDGMKAKCVQRRSRALQNIQPARENVTTRDSKQVSCRT 219
           KQ    E   R YG + +S +R    +++  QRRSR+      +R    +R SK  +  T
Sbjct: 238 KQPQQTETRGRRYGRRPSSKSR----RSQTQQRRSRSRHR---SRSRSRSR-SKSQTHTT 289

Query: 220 RSNRSYGSTTTSKTRNLHNLSKT 288
           RS     ST+ +KTR L + S++
Sbjct: 290 RSTTRSRSTSLTKTRALTSRSRS 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,215,286
Number of Sequences: 219361
Number of extensions: 988994
Number of successful extensions: 2518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)