ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5n06 |
|---|---|
| Clone Library Name | barley_pub |
>RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)| Length = 234 Score = 195 bits (495), Expect = 5e-50 Identities = 100/145 (68%), Positives = 111/145 (76%), Gaps = 5/145 (3%) Frame = +1 Query: 10 GIKRASRSHSYHRRGLWAIKAKNGGXXXXXXXXXXXXXXXX-----YPADDVKPRTASTR 174 GI + SRS YH+RGLWAIKAKNGG YPADDVK + R Sbjct: 20 GIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKR 79 Query: 175 KPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAY 354 KPKPTKLR++ITPGTVLI+LAGR+ GKRVVFLKQL SGLLL+TGPFK+NGVP+RRVNQAY Sbjct: 80 KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAY 139 Query: 355 VIATSTKVDISGVKVEKFDDKYFAR 429 VIATSTKVDISGV VEKFDDKYF + Sbjct: 140 VIATSTKVDISGVNVEKFDDKYFGK 164
>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)| Length = 175 Score = 130 bits (326), Expect = 2e-30 Identities = 61/101 (60%), Positives = 80/101 (79%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 312 YP++DV + + +P KLR+++ PGTVLILLAGR+ GKRVV+LK L+ LL+TGPF Sbjct: 9 YPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPF 68 Query: 313 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDK 435 K+NGVP+RRVN YVIATSTKV + GV VEKF+ +YFA++K Sbjct: 69 KVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEK 109
>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)| Length = 175 Score = 129 bits (324), Expect = 3e-30 Identities = 61/101 (60%), Positives = 80/101 (79%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 312 YP++DV + + +P KLR+++ PGTVLILLAGR+ GKRVV+LK L+ LLI+GPF Sbjct: 9 YPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPF 68 Query: 313 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDK 435 K+NGVP+RRVN YVIATSTKV + GV VEKF+ +YFA++K Sbjct: 69 KVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEK 109
>RL6_PIG (Q2YGT9) 60S ribosomal protein L6| Length = 283 Score = 117 bits (293), Expect = 1e-26 Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 6/107 (5%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 297 YP +DV PR + KP KLR++ITPGT+LI+L GR+ GKRV+FLKQL SGLLL Sbjct: 111 YPTEDV-PRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLL 169 Query: 298 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKV-EKFDDKYFARDK 435 +TGP +N VP+RR +Q +VIATSTK+DISGVK+ E D YF + K Sbjct: 170 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 216
>RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6| Length = 286 Score = 117 bits (292), Expect = 2e-26 Identities = 63/107 (58%), Positives = 78/107 (72%), Gaps = 6/107 (5%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 297 YP +DV PR + KP KLR++ITPGT+LI+L GR+ GKRVVFLKQL SGLLL Sbjct: 114 YPTEDV-PRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLL 172 Query: 298 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKV-EKFDDKYFARDK 435 +TGP +N VP+RR +Q +VIATSTK+DISGVK+ E D YF + K Sbjct: 173 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 219
>RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6| Length = 287 Score = 115 bits (288), Expect = 5e-26 Identities = 63/107 (58%), Positives = 77/107 (71%), Gaps = 6/107 (5%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 297 YP +DV PR + KP KLR++ITPGTVLI+L GR+ GKRVVFLKQL SGLLL Sbjct: 115 YPTEDV-PRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLL 173 Query: 298 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDK 435 +TGP +N VP+RR +Q +VIATSTK+DIS VK+ K D YF + K Sbjct: 174 VTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKK 220
>RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enhancer| element-binding protein 107) (TAXREB107) (Neoplasm-related protein C140) Length = 287 Score = 114 bits (285), Expect = 1e-25 Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 6/107 (5%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 297 YP +DV PR + KP KLR++ITPGT+LI+L GR+ GKRVVFLKQL SGLLL Sbjct: 115 YPTEDV-PRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 173 Query: 298 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDK 435 +TGP +N VP+RR +Q +VIATSTK+DIS VK+ K D YF + K Sbjct: 174 VTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKK 220
>RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enhancer| element-binding protein 107) (TAXREB107) Length = 295 Score = 114 bits (284), Expect = 1e-25 Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 6/105 (5%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 297 YP +DV PR + KP +LRS+ITPGTVLI+L GR+ GKRVVFLKQL SGLLL Sbjct: 123 YPTEDV-PRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLL 181 Query: 298 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFAR 429 +TGP IN VP+RR +Q +VIATSTKVDIS VK+ K D YF + Sbjct: 182 VTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKK 226
>RL6_SCHPO (P79071) 60S ribosomal protein L6| Length = 194 Score = 113 bits (283), Expect = 2e-25 Identities = 63/123 (51%), Positives = 79/123 (64%), Gaps = 1/123 (0%) Frame = +1 Query: 70 AKNGGXXXXXXXXXXXXXXXXYPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYM 249 AKNGG YPA + + +PTKLR+++ PGTV ILLAGR+ Sbjct: 8 AKNGGERMVLPAGEAAAKY--YPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFR 65 Query: 250 GKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATST-KVDISGVKVEKFDDKYFA 426 GKRVV L QL+ L++TGP+K+NGVP+RRVN YVIATS K+D+SGV VEKF YFA Sbjct: 66 GKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFA 124 Query: 427 RDK 435 + K Sbjct: 125 KQK 127
>RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related protein C140)| Length = 297 Score = 112 bits (281), Expect = 3e-25 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 6/105 (5%) Frame = +1 Query: 133 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 297 YP +DV PR + KP +LRS+ITPGTVLI+L GR+ GKRVVFLKQL SGLLL Sbjct: 125 YPTEDV-PRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLL 183 Query: 298 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFAR 429 +TGP +N VP+RR +Q +VIATSTKVDIS VK+ K D YF + Sbjct: 184 VTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKK 228
>RL6_CAEEL (P47991) 60S ribosomal protein L6| Length = 217 Score = 112 bits (279), Expect = 5e-25 Identities = 58/85 (68%), Positives = 71/85 (83%), Gaps = 2/85 (2%) Frame = +1 Query: 181 KPTKLRSTITPGTVLILLAGRYMGKRVVFLKQL-KSGLLLITGPFKINGVPVRRVNQAYV 357 K LR T+TPGTVLI+LAGR+ GKRVVFLKQL +SGLLL+TGP KING P+RR+ QA+V Sbjct: 63 KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122 Query: 358 IATSTKVDISGVKV-EKFDDKYFAR 429 IATS KV++SGVK+ E +D+YF R Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKR 147
>RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e| Length = 96 Score = 46.6 bits (109), Expect = 3e-05 Identities = 23/58 (39%), Positives = 35/58 (60%) Frame = +1 Query: 214 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDIS 387 G + + GR GK+ V + + S +L+TGP +INGV RRVN ++ T KV+I+ Sbjct: 7 GRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVEIN 64
>RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e| Length = 103 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +1 Query: 214 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 G V++ + GR G++ V + + ++ITGP I GV RRVN ++ T K+DI Sbjct: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>RL14E_SULTO (Q975L7) 50S ribosomal protein L14e| Length = 96 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +1 Query: 214 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDIS 387 G + + GR GK+ V + + +L+TGP +N V RRVN ++ T K+DI+ Sbjct: 7 GRICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKIDIN 64
>RL14E_SULSO (Q980C1) 50S ribosomal protein L14e| Length = 96 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 I G + + + GR G + V + + +L+TGP I GV RRVN ++ T K+DI Sbjct: 4 IEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDI 63
>RL14E_METKA (Q8TX43) 50S ribosomal protein L14e| Length = 94 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 I G + + AGR GK V + + ++ITGP + GV RR N ++ T KVDI Sbjct: 5 IEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKVDI 64
>RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e| Length = 100 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = +1 Query: 193 LRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATST 372 + + G + + GR G++ V + + +L+TGP + GV RRVN ++ Sbjct: 1 MAKVVEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDK 60 Query: 373 KVDI 384 KVDI Sbjct: 61 KVDI 64
>RL6_ENTHI (O15595) 60S ribosomal protein L6 (Fragment)| Length = 92 Score = 38.1 bits (87), Expect = 0.009 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 14/60 (23%) Frame = +1 Query: 133 YPADDV---KPRTASTRK-------PKP----TKLRSTITPGTVLILLAGRYMGKRVVFL 270 YP DD+ + + TRK KP KLR +I PG +LI++ G+Y GK+VV L Sbjct: 20 YPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGKKVVSL 79
>RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e| Length = 83 Score = 35.0 bits (79), Expect = 0.079 Identities = 19/60 (31%), Positives = 34/60 (56%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 I G + +++AGR G++VV + + +L+TG +N V RR+N ++ K+DI Sbjct: 4 IDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDI 62
>RL14E_PYRHO (P59937) 50S ribosomal protein L14e| Length = 82 Score = 33.1 bits (74), Expect = 0.30 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 I G + +++AGR G++ V + + +L+TG +N V RR+N ++ K+DI Sbjct: 4 IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDI 62
>RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e| Length = 82 Score = 33.1 bits (74), Expect = 0.30 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 I G + +++AGR G++ V + + +L+TG +N V RR+N ++ K+DI Sbjct: 4 IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDI 62
>RL27_RAT (P61354) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_MOUSE (P61358) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_HUMAN (P61353) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_CHICK (P61355) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_CERNI (P61357) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_BOVIN (P61356) 60S ribosomal protein L27| Length = 135 Score = 32.3 bits (72), Expect = 0.51 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVLVLAGRYSGRKAVIVKNIDDG 31
>RL27_HIPCM (P61359) 60S ribosomal protein L27| Length = 135 Score = 32.0 bits (71), Expect = 0.67 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVMVLAGRYAGRKAVIVKNIDDG 31
>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27| Length = 135 Score = 32.0 bits (71), Expect = 0.67 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVMVLAGRYAGRKAVIVKNIDDG 31
>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27| Length = 135 Score = 32.0 bits (71), Expect = 0.67 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSG 288 PG V+++LAGRY G++ V +K + G Sbjct: 6 PGKVVMVLAGRYAGRKAVIVKNIDDG 31
>RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e| Length = 83 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 384 I G + +++AGR G++VV + +L+TG +N V RR+N ++ +V+I Sbjct: 4 IEVGRIAVVIAGRRAGQKVVVADIIDKNFVLVTGA-GLNKVKRRRMNVKHLEPLPERVNI 62
>RL27_CAEEL (P91914) 60S ribosomal protein L27| Length = 136 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +1 Query: 211 PGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKI 318 PG V+++L G+Y G++ V +KQ G+ T P I Sbjct: 7 PGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAI 42
>ELL_MOUSE (O08856) RNA polymerase II elongation factor ELL (Eleven-nineteen| lysine-rich leukemia protein) Length = 602 Score = 30.0 bits (66), Expect = 2.5 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Frame = +1 Query: 151 KPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVP 330 K R + + + T+ RS I +I GRYMGK+V F K P + VP Sbjct: 129 KARQSMAQAEEETRSRSAI-----VIKAGGRYMGKKVQFRK---------PAPGAADAVP 174 Query: 331 VRR----VNQAYVIATSTKVDISGVKVEKFDDK 417 R+ +N A I S+ S V F D+ Sbjct: 175 SRKRATPINLASAIRKSSGSGASSVVQRPFRDR 207
>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)| (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) Length = 911 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 265 FLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVD 381 FL LKS L L +GP ++ G +N+ VI S+KVD Sbjct: 487 FLSDLKSRLPLRSGPTRVCGHDTDIMNRDVVIVESSKVD 525
>YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III| Length = 493 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = +1 Query: 232 LAGRYMGKRVVFLKQLKSGLLLITGP 309 LA RY GKRVVF+ L S LL + P Sbjct: 104 LASRYGGKRVVFVTILGSALLTLLNP 129
>V51K_BPL79 (P24125) 51.5 kDa protein| Length = 452 Score = 28.9 bits (63), Expect = 5.7 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 250 GKRVVFLKQLKSGLLLITGPFKINGVPVRRV 342 G RV+FL K + IT FK++GVP+ +V Sbjct: 25 GGRVLFLVHRKELIDQITNSFKVHGVPLNQV 55
>GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator of G-protein| signaling 4) (Protein G18) (G18.1b) Length = 160 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +3 Query: 222 ADPARWEVHGEARGVPQAAQVWPAPHHWTFQDQWCPSSPGEPGLCH 359 A+ + E GE +G PQ + WP P+ T + P SP PG H Sbjct: 3 AERPQEEEDGE-QGPPQDEEGWPPPNSTTRPWRSAPPSPPPPGTRH 47
>SYT_NITEU (Q82VV1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 635 Score = 28.9 bits (63), Expect = 5.7 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +1 Query: 190 KLRSTITPGTVLILLAGRYMGKRVVFLKQLK--SGLLLITGPFKINGVPVRRVNQAYVIA 363 ++ +I+PG LAG+ GK V +Q++ S L+LIT G+ + R + A+++A Sbjct: 22 EVAESISPGLARAALAGKLNGKLVDLSEQIETDSDLVLITDK-DSEGLEIIRHSCAHLLA 80 Query: 364 TSTKVDISGVKV 399 + K G +V Sbjct: 81 HAVKELFPGTQV 92
>RL27_PEA (Q05462) 60S ribosomal protein L27| Length = 135 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSG 288 + P +ILL GRY GK+ V +K G Sbjct: 5 LKPNKAVILLQGRYAGKKAVIVKTFDDG 32
>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A| Length = 136 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSG 288 + PG V ++ GR+ GK+VV L+ + G Sbjct: 5 LKPGKVALITRGRFAGKKVVILQAIDQG 32
>THIG_SYNY3 (Q55710) Bifunctional goxB/thiG protein [Includes: Glycine oxidase| (EC 1.5.3.-); Thiazole biosynthesis protein thiG] Length = 656 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = +3 Query: 237 WEVHGEARGVP----QAAQVWPAPHHWTFQDQWCPSSPGEP 347 W+ H +G+ +A +++PA W +D W PG P Sbjct: 262 WQPHNTPQGIQTLLGRAIRLFPALGDWAIEDFWWGFRPGTP 302
>RL27B_SCHPO (O74538) 60S ribosomal protein L27-B| Length = 136 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 205 ITPGTVLILLAGRYMGKRVVFLKQLKSG 288 + PG V ++ GR+ GK+VV L+ + G Sbjct: 5 LKPGKVALVTRGRFAGKKVVILQNVDQG 32
>KDSB_PSEPK (Q88LM7) 3-deoxy-manno-octulosonate cytidylyltransferase (EC| 2.7.7.38) (CMP-KDO synthetase) (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS) Length = 254 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 184 PTKLRSTITPGTVLILLAGRYMGKRV 261 P +LRST PG L+L+AG+ M + V Sbjct: 10 PARLRSTRLPGKPLLLIAGKPMVQHV 35
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 17 SARRGRTPTTAAGSGPSRPRTA 82 SA R P +AA SGP+RPR A Sbjct: 383 SAPRPGPPASAAASGPARPRAA 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,138,338 Number of Sequences: 219361 Number of extensions: 896777 Number of successful extensions: 3043 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 2947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3038 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
