ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5n03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MIAA_PROMM (Q7TV75) tRNA delta(2)-isopentenylpyrophosphate trans... 33 0.50
2DGKD_HUMAN (Q16760) Diacylglycerol kinase delta (EC 2.7.1.107) (... 32 1.1
3Y5100_ANASP (Q8YM40) Hypothetical UPF0192 protein all5100 precursor 32 1.4
4NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 pr... 32 1.9
5SYL_GEOSL (Q74AZ0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 31 2.5
6UBP47_MOUSE (Q8BY87) Ubiquitin carboxyl-terminal hydrolase 47 (E... 31 3.2
7KSGA_SYNY3 (P72666) Dimethyladenosine transferase (EC 2.1.1.-) (... 30 4.2
8KBTB7_HUMAN (Q8WVZ9) Kelch repeat and BTB domain-containing prot... 30 4.2
9KBTB6_HUMAN (Q86V97) Kelch repeat and BTB domain-containing prot... 30 4.2
10PO5F1_BRARE (Q90270) POU domain, class 5, transcription factor 1... 30 5.5
11CDGT_THETU (P26827) Cyclomaltodextrin glucanotransferase precurs... 30 7.2
12HLYAC_ECOLI (P09983) Hemolysin, chromosomal 30 7.2
135HT7R_CAVPO (P50407) 5-hydroxytryptamine 7 receptor (5-HT-7) (Se... 30 7.2
14HLYAP_ECOLI (P08715) Hemolysin, plasmid 30 7.2

>MIAA_PROMM (Q7TV75) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 299

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 RNIEIGAEMILKQKLRGQGMAFLVGGGSVMQKIL 588
           +  +  A++IL QKLR Q M FLVGG  +  K L
Sbjct: 78  QEFQAAAQLILAQKLREQNMPFLVGGSGLYLKAL 111



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>DGKD_HUMAN (Q16760) Diacylglycerol kinase delta (EC 2.7.1.107) (Diglyceride|
           kinase delta) (DGK-delta) (DAG kinase delta) (130 kDa
           diacylglycerol kinase)
          Length = 1214

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -3

Query: 416 SSSPPKFARSIGSILPGNGAEIPTYPSSGPGLKKTVLVILFPNIHCHTPPSFSGK*LLS 240
           S SP +   S GS+  G+ A +P  P S  GL      IL+PN+      S  G  ++S
Sbjct: 681 SKSPCEKLISKGSLSLGSSASLPPQPGSRDGLPALNTKILYPNVRAGMSGSLPGGSVIS 739



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>Y5100_ANASP (Q8YM40) Hypothetical UPF0192 protein all5100 precursor|
          Length = 1906

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 127 AFQISGGDVQVLQVMVKSQDKLTAKPGTMCYMSGNIQMDNNYLPENDGGVWQ 282
           +FQ+SG   Q + V V  ++K+ AK G + Y    +Q   N   EN   +W+
Sbjct: 449 SFQVSGKKNQSVDVTVPLREKINAKTGMLAY---GVQARTNKYQENGKELWR 497



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>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch|
           4) (hNotch4) [Contains: Notch 4 extracellular
           truncation; Notch 4 intracellular domain]
          Length = 2003

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
 Frame = -3

Query: 440 QRKESAWQSSSPPKFARSIG------------SILPG---NGAEIPTYPSSGPGLKKTVL 306
           +R ++  +   PP F    G            S +PG      ++  + S+ P +   V 
Sbjct: 112 ERCQAKLEDPCPPSFCSKRGRCHIQASGRPQCSCMPGWTGEQCQLRDFCSANPCVNGGVC 171

Query: 305 VILFPNIHCHTPPSFSG 255
           +  +P I CH PP F G
Sbjct: 172 LATYPQIQCHCPPGFEG 188



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>SYL_GEOSL (Q74AZ0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 824

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 238 MDNNYLPENDGGVWQWIFGKSITSTVFFNPGPDDGYVGISAPFP-GRI 378
           M   Y+P+N  G WQ I+ ++ T TV  +P     Y+    P+P GRI
Sbjct: 1   MQERYIPKNVEGKWQEIWEENKTFTVTEDPSKPKYYLLEMFPYPSGRI 48



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>UBP47_MOUSE (Q8BY87) Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 47)
           (Ubiquitin-specific-processing protease 47)
           (Deubiquitinating enzyme 47)
          Length = 1376

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 609 SNHLPGSKNFLHY*PTADKEGHPLTPKLLFED 514
           +N  PG KNFLH     DK+G P  P++L ED
Sbjct: 115 ANFEPGKKNFLH---LTDKDGEP--PQMLLED 141



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>KSGA_SYNY3 (P72666) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 284

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/102 (28%), Positives = 45/102 (44%)
 Frame = +1

Query: 115 GSVTAFQISGGDVQVLQVMVKSQDKLTAKPGTMCYMSGNIQMDNNYLPENDGGVWQWIFG 294
           G++   ++ G +  VL V  +  ++LTA+P T  Y + +++M   YL   D     WI  
Sbjct: 133 GTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRM--QYLARVD-----WIV- 184

Query: 295 KSITSTVFFNPGPDDGYVGISAPFPGRILPIDLANFGGELLC 420
             +    F  P   D  V    P+P   LP D      +LLC
Sbjct: 185 -DVPPKAFTPPPKVDSAVIRLTPYPVEQLPGD-RRLLDQLLC 224



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>KBTB7_HUMAN (Q8WVZ9) Kelch repeat and BTB domain-containing protein 7|
          Length = 684

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 55  AMAAPFFSTPFQPYVYQSQQGSVTAFQISGGDVQVL 162
           A A P+F + F   +Y+SQQ SVT   +     +VL
Sbjct: 90  AAACPYFKSMFTGGMYESQQASVTMHDVDAESFEVL 125



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>KBTB6_HUMAN (Q86V97) Kelch repeat and BTB domain-containing protein 6|
          Length = 674

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 55  AMAAPFFSTPFQPYVYQSQQGSVTAFQISGGDVQVL 162
           A A P+F + F   +Y+SQQ SVT   +     +VL
Sbjct: 90  AAACPYFKSMFTGGMYESQQASVTMHDVDAESFEVL 125



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>PO5F1_BRARE (Q90270) POU domain, class 5, transcription factor 1 (POU domain|
           protein 2)
          Length = 472

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 431 ESAWQSSSPPKFARSIGSILPGNGAEIPTYPSSGPGL 321
           E+ +   SPP      G++LPG G   P +P   P L
Sbjct: 411 EAQYYEQSPPPPPHMGGTVLPGQGYPGPAHPGGAPAL 447



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>CDGT_THETU (P26827) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 710

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +1

Query: 106 SQQGSVTAFQISGGDVQVLQVMVKSQDKLTAKPG-TMCYMSGNIQMDNNYLPENDGGVWQ 282
           +  GSVT F +S G+V V Q +  S   L    G TM      I +D        G   Q
Sbjct: 499 ASDGSVTPFTLSAGEVAVWQYVSSSNSPLIGHVGPTMTKAGQTITIDGRGFGTTSG---Q 555

Query: 283 WIFGKSITSTVFFNPGPDDGYVGISAP 363
            +FG +  + V +    DD  V +  P
Sbjct: 556 VLFGSTAGTIVSW----DDTEVKVKVP 578



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>HLYAC_ECOLI (P09983) Hemolysin, chromosomal|
          Length = 1023

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 106 SQQGSVTAFQISGGDVQVLQVMVKSQDKLTAK 201
           ++ G+ T  ++ GGDV+VLQ +VK Q+    K
Sbjct: 658 TEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGK 689



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>5HT7R_CAVPO (P50407) 5-hydroxytryptamine 7 receptor (5-HT-7) (Serotonin|
           receptor 7) (5-HT-X)
          Length = 446

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 310 CWLYFFQISTATRLRRFQASNCCPSECSRTC 218
           CWL FF +STA       A +C P    RTC
Sbjct: 340 CWLPFFLLSTARPFICGTACSCIPLWVERTC 370



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>HLYAP_ECOLI (P08715) Hemolysin, plasmid|
          Length = 1024

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 106 SQQGSVTAFQISGGDVQVLQVMVKSQDKLTAK 201
           ++ G+ T  ++ GGDV+VLQ +VK Q+    K
Sbjct: 659 TEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGK 690


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,819,389
Number of Sequences: 219361
Number of extensions: 1896011
Number of successful extensions: 4711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4710
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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