Clone Information

BLAST Search Result

Clone Name	bags5n03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469732.1\| Oryza sativa (japonica cultivar-group), mRNA	690	0.0
2	dbj\|AK071214.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	690	0.0
3	dbj\|AK060347.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	668	0.0
4	gb\|AY104540.1\| Zea mays PCO106157 mRNA sequence	543	e-151
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	194	2e-46
6	gb\|AC087852.11\| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic...	194	2e-46
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	194	2e-46
8	gb\|AC117724.14\| Mus musculus chromosome 5, clone RP24-347F19, co...	44	0.53
9	gb\|AC093412.3\| Homo sapiens chromosome 3 clone RP11-11L6, comple...	44	0.53
10	gb\|CP000352.1\| Ralstonia metallidurans CH34, complete genome	42	2.1
11	emb\|Z36773.1\|TPNAPG T.pantotropha (LMD82.5) dctM, napA, napB, na...	42	2.1
12	emb\|AL355490.24\| Human DNA sequence from clone RP11-452K12 on ch...	42	2.1
13	gb\|AC087412.14\| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno...	42	2.1
14	emb\|BX908401.14\| Zebrafish DNA sequence from clone DKEY-53F14 in...	42	2.1
15	dbj\|AB207102.1\| Acidovorax avenae subsp. avenae Hrp gene cluster...	42	2.1
16	emb\|BX571831.7\| Zebrafish DNA sequence from clone DKEY-266J11 in...	42	2.1
17	dbj\|BA000031.2\| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo...	42	2.1
18	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	42	2.1
19	gb\|AC152961.2\| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer...	42	2.1
20	dbj\|AP003399.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.1
21	gb\|CP000109.1\| Thiomicrospira crunogena XCL-2, complete genome	40	8.3
22	ref\|XM_463339.1\| Oryza sativa (japonica cultivar-group), predic...	40	8.3
23	ref\|XM_472267.1\| Oryza sativa (japonica cultivar-group), predic...	40	8.3
24	gb\|AC111130.17\| Mus musculus chromosome 5, clone RP23-339G19, co...	40	8.3
25	gb\|AY023555.1\| Oryza sativa microsatellite MRG5880 containing (T...	40	8.3
26	ref\|XM_420890.1\| PREDICTED: Gallus gallus similar to gamma-SNAP-...	40	8.3
27	gb\|AC147611.1\| Pan troglodytes BAC clone RP43-115B5 from 7, comp...	40	8.3
28	gb\|AC140370.3\| Mus musculus BAC clone RP24-75N6 from chromosome ...	40	8.3
29	gb\|AC123876.5\| Mus musculus BAC clone RP23-270P19 from chromosom...	40	8.3
30	ref\|XM_764772.1\| Giardia lamblia ATCC 50803 hypothetical protein...	40	8.3
31	gb\|AC010719.4\| Homo sapiens BAC clone CTD-2227E11 from 7, comple...	40	8.3
32	emb\|AL731619.3\|OSJN00267 Oryza sativa genomic DNA, chromosome 4,...	40	8.3
33	emb\|AL731601.3\|OSJN00245 Oryza sativa genomic DNA, chromosome 4,...	40	8.3
34	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
35	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
36	gb\|AC147034.2\| Mus musculus BAC clone RP23-189C2 from chromosome...	40	8.3
37	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	8.3
38	dbj\|AP003413.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
39	dbj\|AP003308.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
40	gb\|AY898625.1\| Acidovorax avenae subsp. citrulli lytic murein tr...	40	8.3

>ref|XM_469732.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score =  690 bits (348), Expect = 0.0
 Identities = 544/607 (89%), Gaps = 2/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtcggctcccactgatcgcttctagnaagcttccacagnagctccggcccgccgccatgg 61
           |||||||| |||||||||||||||| ||||||||  |   |||||| ||| |||||||||
Sbjct: 58  gtcggctctcactgatcgcttctag-aagcttccggaag-gctccgaccccccgccatgg 115

                                                                       
Query: 62  ccgcgcccttcttctccacccccttccaaccctacgtctaccagagccagcagggatctg 121
           ||||||||||||||||||| || ||||| ||||||||||||||||||||| | |||||||
Sbjct: 116 ccgcgcccttcttctccacgcctttccagccctacgtctaccagagccaggaaggatctg 175

                                                                       
Query: 122 tgacggcgtttcagatatccggtggggatgtgcaggtcctgcaggtgatggtgaagtcgc 181
           |||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct: 176 tgacggcgttccagatatccggcggcgatgtgcaggtcctgcaggtgatggttaagtcac 235

                                                                       
Query: 182 aggacaagttgacggcgaaaccaggtacaatgtgttacatgtccgggaacattcagatgg 241
           |||| |||||||| | |||||||||||||||||| |||||||| || || ||||| | ||
Sbjct: 236 aggaaaagttgaccgtgaaaccaggtacaatgtgctacatgtctggtaatattcaaacgg 295

                                                                       
Query: 242 acaacaattacttgcctgaaaacgacggaggcgtgtggcagtggatatttggaaaaagta 301
           ||||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||| |
Sbjct: 296 acaacaactacttgcctgaaaatgatggaggtgtgtggcagtggatttttgggaaaagca 355

                                                                       
Query: 302 taaccagcactgttttcttcaatcctggccctgatgatggatatgtggggatttctgcgc 361
           ||| ||||| |||||||||||| |||||| |||||||||||||||| ||||||||||| |
Sbjct: 356 taagcagcagtgttttcttcaaccctggctctgatgatggatatgttgggatttctgcac 415

                                                                       
Query: 362 cgtttcctgggaggatactgcctatagatctagcgaactttggtggagaactactttgcc 421
           | ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 416 catttcctgggagaatactgcctatggatctagcaaactttggtggagaacttctttgcc 475

                                                                       
Query: 422 aggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacagttgatcagc 481
           |||||||| |||| |||||||| || ||||||||||||||||||||||||||||| ||| 
Sbjct: 476 aggcagatgcttttctctgctcagttaatgatgtgtcagtcacaagtacagttgagcaga 535

                                                                       
Query: 482 ggccacgcaacattgaaattggtgcagagatgatcctcaaacagaagcttaggggtcaag 541
           |||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 536 ggccgcgaaacattgaaattggtgcagaggtgatcctcaaacagaagcttaggggtcaag 595

                                                                       
Query: 542 ggatggccttccttgtcggcggtgggtcagtaatgcagaaaattcttgctccccgggagg 601
           ||||||| |||||||| || ||||| ||||| ||||||||||||||||| || || ||||
Sbjct: 596 ggatggctttccttgttggtggtggatcagtcatgcagaaaattcttgcccctcgtgagg 655

                  
Query: 602 tgattac 608
           |||||||
Sbjct: 656 tgattac 662

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>dbj|AK071214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082F22, full
           insert sequence
          Length = 1417

 Score =  690 bits (348), Expect = 0.0
 Identities = 544/607 (89%), Gaps = 2/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtcggctcccactgatcgcttctagnaagcttccacagnagctccggcccgccgccatgg 61
           |||||||| |||||||||||||||| ||||||||  |   |||||| ||| |||||||||
Sbjct: 66  gtcggctctcactgatcgcttctag-aagcttccggaag-gctccgaccccccgccatgg 123

                                                                       
Query: 62  ccgcgcccttcttctccacccccttccaaccctacgtctaccagagccagcagggatctg 121
           ||||||||||||||||||| || ||||| ||||||||||||||||||||| | |||||||
Sbjct: 124 ccgcgcccttcttctccacgcctttccagccctacgtctaccagagccaggaaggatctg 183

                                                                       
Query: 122 tgacggcgtttcagatatccggtggggatgtgcaggtcctgcaggtgatggtgaagtcgc 181
           |||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct: 184 tgacggcgttccagatatccggcggcgatgtgcaggtcctgcaggtgatggttaagtcac 243

                                                                       
Query: 182 aggacaagttgacggcgaaaccaggtacaatgtgttacatgtccgggaacattcagatgg 241
           |||| |||||||| | |||||||||||||||||| |||||||| || || ||||| | ||
Sbjct: 244 aggaaaagttgaccgtgaaaccaggtacaatgtgctacatgtctggtaatattcaaacgg 303

                                                                       
Query: 242 acaacaattacttgcctgaaaacgacggaggcgtgtggcagtggatatttggaaaaagta 301
           ||||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||| |
Sbjct: 304 acaacaactacttgcctgaaaatgatggaggtgtgtggcagtggatttttgggaaaagca 363

                                                                       
Query: 302 taaccagcactgttttcttcaatcctggccctgatgatggatatgtggggatttctgcgc 361
           ||| ||||| |||||||||||| |||||| |||||||||||||||| ||||||||||| |
Sbjct: 364 taagcagcagtgttttcttcaaccctggctctgatgatggatatgttgggatttctgcac 423

                                                                       
Query: 362 cgtttcctgggaggatactgcctatagatctagcgaactttggtggagaactactttgcc 421
           | ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 424 catttcctgggagaatactgcctatggatctagcaaactttggtggagaacttctttgcc 483

                                                                       
Query: 422 aggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacagttgatcagc 481
           |||||||| |||| |||||||| || ||||||||||||||||||||||||||||| ||| 
Sbjct: 484 aggcagatgcttttctctgctcagttaatgatgtgtcagtcacaagtacagttgagcaga 543

                                                                       
Query: 482 ggccacgcaacattgaaattggtgcagagatgatcctcaaacagaagcttaggggtcaag 541
           |||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 544 ggccgcgaaacattgaaattggtgcagaggtgatcctcaaacagaagcttaggggtcaag 603

                                                                       
Query: 542 ggatggccttccttgtcggcggtgggtcagtaatgcagaaaattcttgctccccgggagg 601
           ||||||| |||||||| || ||||| ||||| ||||||||||||||||| || || ||||
Sbjct: 604 ggatggctttccttgttggtggtggatcagtcatgcagaaaattcttgcccctcgtgagg 663

                  
Query: 602 tgattac 608
           |||||||
Sbjct: 664 tgattac 670

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>dbj|AK060347.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E10, full
           insert sequence
          Length = 1240

 Score =  668 bits (337), Expect = 0.0
 Identities = 543/608 (89%), Gaps = 3/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtcggctcccactgatcgcttctagnaagcttccacagnagctccggcccgccgccatgg 61
           |||||||| |||||||||||||||| ||||||||  |   |||||| ||| |||||||||
Sbjct: 65  gtcggctctcactgatcgcttctag-aagcttccggaag-gctccgaccccccgccatgg 122

                                                                       
Query: 62  ccg-cgcccttcttctccacccccttccaaccctacgtctaccagagccagcagggatct 120
           ||| |||||||||||||||| || ||||| ||||||||||||||||||||| | ||||||
Sbjct: 123 ccggcgcccttcttctccacgcctttccagccctacgtctaccagagccaggaaggatct 182

                                                                       
Query: 121 gtgacggcgtttcagatatccggtggggatgtgcaggtcctgcaggtgatggtgaagtcg 180
           ||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||| 
Sbjct: 183 gtgacggcgttccagatatccggcggcgatgtgcaggtcctgcaggtgatggttaagtca 242

                                                                       
Query: 181 caggacaagttgacggcgaaaccaggtacaatgtgttacatgtccgggaacattcagatg 240
           ||||| |||||||| | |||||||||||||||||| |||||||| || || ||||| | |
Sbjct: 243 caggaaaagttgaccgtgaaaccaggtacaatgtgctacatgtctggtaatattcaaacg 302

                                                                       
Query: 241 gacaacaattacttgcctgaaaacgacggaggcgtgtggcagtggatatttggaaaaagt 300
           |||||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||| 
Sbjct: 303 gacaacaactacttgcctgaaaatgatggaggtgtgtggcagtggatttttgggaaaagc 362

                                                                       
Query: 301 ataaccagcactgttttcttcaatcctggccctgatgatggatatgtggggatttctgcg 360
           |||| ||||| |||||||||||| |||||| ||||||||||| |||| ||||||||||| 
Sbjct: 363 ataagcagcagtgttttcttcaaccctggctctgatgatggagatgttgggatttctgca 422

                                                                       
Query: 361 ccgtttcctgggaggatactgcctatagatctagcgaactttggtggagaactactttgc 420
           || ||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 423 ccatttcctgggagaatactgcctatggatctagcaaactttggtggagaacttctttgc 482

                                                                       
Query: 421 caggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacagttgatcag 480
           ||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 483 caggcagatgcttttctctgctcagttaatgatgtgtcagtcacaagtacagttgagcag 542

                                                                       
Query: 481 cggccacgcaacattgaaattggtgcagagatgatcctcaaacagaagcttaggggtcaa 540
            |||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 543 aggccgcgaaacattgaaattggtgcagaggtgatcctcaaacagaagcttaggggtcaa 602

                                                                       
Query: 541 gggatggccttccttgtcggcggtgggtcagtaatgcagaaaattcttgctccccgggag 600
           |||||||| |||||||| || ||||| ||||| ||||||||||||||||| || || |||
Sbjct: 603 gggatggctttccttgttggtggtggatcagtcatgcagaaaattcttgcccctcgtgag 662

                   
Query: 601 gtgattac 608
           ||||||||
Sbjct: 663 gtgattac 670

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>gb|AY104540.1| Zea mays PCO106157 mRNA sequence
          Length = 1359

 Score =  543 bits (274), Expect = e-151
 Identities = 487/558 (87%)
 Strand = Plus / Plus

                                                                       
Query: 53  ccgccatggccgcgcccttcttctccacccccttccaaccctacgtctaccagagccagc 112
           |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct: 127 ccgccatggccgcgcccttcttttccactcctttccagccctacgtctaccagagccagc 186

                                                                       
Query: 113 agggatctgtgacggcgtttcagatatccggtggggatgtgcaggtcctgcaggtgatgg 172
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 187 aaggatctgtgacggcgtttcagatatccggtggagatgtgcaggtcctgcaggtgatgc 246

                                                                       
Query: 173 tgaagtcgcaggacaagttgacggcgaaaccaggtacaatgtgttacatgtccgggaaca 232
           ||||||| ||||| ||| |||| || ||||||||| ||||||| |||||||| ||||| |
Sbjct: 247 tgaagtctcaggagaagctgactgcaaaaccaggtgcaatgtgctacatgtctgggaata 306

                                                                       
Query: 233 ttcagatggacaacaattacttgcctgaaaacgacggaggcgtgtggcagtggatatttg 292
           | ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 307 tgcagatggacaacaattacttgcctgaaaatgatggaggcgtgtggcagtggatttttg 366

                                                                       
Query: 293 gaaaaagtataaccagcactgttttcttcaatcctggccctgatgatggatatgtgggga 352
           | ||| || ||| ||||||  ||||||| ||| ||||  |||||||||||||||| ||||
Sbjct: 367 ggaaacgtgtaagcagcaccattttctttaattctggatctgatgatggatatgtcggga 426

                                                                       
Query: 353 tttctgcgccgtttcctgggaggatactgcctatagatctagcgaactttggtggagaac 412
           || |||| || ||||||||||||||||||||  |||||||| | |||||| |||||||||
Sbjct: 427 ttgctgcaccatttcctgggaggatactgccggtagatctaacaaactttagtggagaac 486

                                                                       
Query: 413 tactttgccaggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacag 472
           | ||||||||||||||| |||| || || |||||||||||||| || ||| | |||||||
Sbjct: 487 ttctttgccaggcagatgcttttctatgttcggtcaatgatgtctccgtctctagtacag 546

                                                                       
Query: 473 ttgatcagcggccacgcaacattgaaattggtgcagagatgatcctcaaacagaagctta 532
           |||| |   ||||||| || ||||| |||||||||||||||||||| ||||| || ||||
Sbjct: 547 ttgagccaaggccacggaatattgagattggtgcagagatgatccttaaacaaaaactta 606

                                                                       
Query: 533 ggggtcaagggatggccttccttgtcggcggtgggtcagtaatgcagaaaattcttgctc 592
           |||| || |||||||| || ||||| || ||||| ||||| ||||||||||| |||||||
Sbjct: 607 ggggccaggggatggcttttcttgttggtggtggatcagtcatgcagaaaatccttgctc 666

                             
Query: 593 cccgggaggtgattactg 610
           |  | |||||||| ||||
Sbjct: 667 ctagagaggtgataactg 684

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  194 bits (98), Expect = 2e-46
 Identities = 161/182 (88%)
 Strand = Plus / Plus

                                                                            
Query: 203      caggtacaatgtgttacatgtccgggaacattcagatggacaacaattacttgcctgaaa 262
                ||||||||||||| |||||||| || || ||||| | ||||||||| |||||||||||||
Sbjct: 30445150 caggtacaatgtgctacatgtctggtaatattcaaacggacaacaactacttgcctgaaa 30445209

                                                                            
Query: 263      acgacggaggcgtgtggcagtggatatttggaaaaagtataaccagcactgttttcttca 322
                | || ||||| |||||||||||||| ||||| ||||| |||| ||||| |||||||||||
Sbjct: 30445210 atgatggaggtgtgtggcagtggatttttgggaaaagcataagcagcagtgttttcttca 30445269

                                                                            
Query: 323      atcctggccctgatgatggatatgtggggatttctgcgccgtttcctgggaggatactgc 382
                | |||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 30445270 accctggctctgatgatggatatgttgggatttctgcaccatttcctgggagaatactgc 30445329

                  
Query: 383      ct 384
                ||
Sbjct: 30445330 ct 30445331



 Score =  115 bits (58), Expect = 2e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                            
Query: 421      caggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacagttgatcag 480
                ||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 30446100 caggcagatgcttttctctgctcagttaatgatgtgtcagtcacaagtacagttgagcag 30446159

                                              
Query: 481      cggccacgcaacattgaaattggtgcagag 510
                 |||| || |||||||||||||||||||||
Sbjct: 30446160 aggccgcgaaacattgaaattggtgcagag 30446189



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 92/104 (88%), Gaps = 2/104 (1%)
 Strand = Plus / Plus

                                                                            
Query: 2        gtcggctcccactgatcgcttctagnaagcttccacagnagctccggcccgccgccatgg 61
                |||||||| |||||||||||||||| ||||||||  |   |||||| ||| |||||||||
Sbjct: 30444071 gtcggctctcactgatcgcttctag-aagcttccggaag-gctccgaccccccgccatgg 30444128

                                                            
Query: 62       ccgcgcccttcttctccacccccttccaaccctacgtctaccag 105
                ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 30444129 ccgcgcccttcttctccacgcctttccagccctacgtctaccag 30444172



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                            
Query: 102      ccagagccagcagggatctgtgacggcgtttcagatatccggtggggatgtgcaggtcct 161
                |||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 30444361 ccagagccaggaaggatctgtgacggcgttccagatatccggcggcgatgtgcaggtcct 30444420

                      
Query: 162      gcaggt 167
                ||||||
Sbjct: 30444421 gcaggt 30444426



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                            
Query: 512      tgatcctcaaacagaagcttaggggtcaagggatggccttccttgtcggcggtgggtcag 571
                ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 30446311 tgatcctcaaacagaagcttaggggtcaagggatggctttccttgttggtggtggatcag 30446370



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 388      gatctagcgaactttggtggagaactactttgccagg 424
                |||||||| ||||||||||||||||| ||||||||||
Sbjct: 30445992 gatctagcaaactttggtggagaacttctttgccagg 30446028



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 164      aggtgatggtgaagtcgcaggacaagttgacggcgaaaccaggtac 209
                |||||||||| ||||| ||||| |||||||| | ||||||||||||
Sbjct: 30444524 aggtgatggttaagtcacaggaaaagttgaccgtgaaaccaggtac 30444569



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 574      atgcagaaaattcttgctccccgggaggtgattac 608
                ||||||||||||||||| || || |||||||||||
Sbjct: 30446833 atgcagaaaattcttgcccctcgtgaggtgattac 30446867



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 51       cgccgccatggccgcgcccttcttc 75
                ||||||||||||||||| |||||||
Sbjct: 26941487 cgccgccatggccgcgctcttcttc 26941511

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>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
             sequence
          Length = 149380

 Score =  194 bits (98), Expect = 2e-46
 Identities = 161/182 (88%)
 Strand = Plus / Minus

                                                                         
Query: 203   caggtacaatgtgttacatgtccgggaacattcagatggacaacaattacttgcctgaaa 262
             ||||||||||||| |||||||| || || ||||| | ||||||||| |||||||||||||
Sbjct: 31865 caggtacaatgtgctacatgtctggtaatattcaaacggacaacaactacttgcctgaaa 31806

                                                                         
Query: 263   acgacggaggcgtgtggcagtggatatttggaaaaagtataaccagcactgttttcttca 322
             | || ||||| |||||||||||||| ||||| ||||| |||| ||||| |||||||||||
Sbjct: 31805 atgatggaggtgtgtggcagtggatttttgggaaaagcataagcagcagtgttttcttca 31746

                                                                         
Query: 323   atcctggccctgatgatggatatgtggggatttctgcgccgtttcctgggaggatactgc 382
             | |||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 31745 accctggctctgatgatggatatgttgggatttctgcaccatttcctgggagaatactgc 31686

               
Query: 383   ct 384
             ||
Sbjct: 31685 ct 31684



 Score =  115 bits (58), Expect = 2e-22
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                         
Query: 421   caggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacagttgatcag 480
             ||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 30915 caggcagatgcttttctctgctcagttaatgatgtgtcagtcacaagtacagttgagcag 30856

                                           
Query: 481   cggccacgcaacattgaaattggtgcagag 510
              |||| || |||||||||||||||||||||
Sbjct: 30855 aggccgcgaaacattgaaattggtgcagag 30826



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 92/104 (88%), Gaps = 2/104 (1%)
 Strand = Plus / Minus

                                                                         
Query: 2     gtcggctcccactgatcgcttctagnaagcttccacagnagctccggcccgccgccatgg 61
             |||||||| |||||||||||||||| ||||||||  |   |||||| ||| |||||||||
Sbjct: 32944 gtcggctctcactgatcgcttctag-aagcttccggaag-gctccgaccccccgccatgg 32887

                                                         
Query: 62    ccgcgcccttcttctccacccccttccaaccctacgtctaccag 105
             ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 32886 ccgcgcccttcttctccacgcctttccagccctacgtctaccag 32843



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                         
Query: 102   ccagagccagcagggatctgtgacggcgtttcagatatccggtggggatgtgcaggtcct 161
             |||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 32654 ccagagccaggaaggatctgtgacggcgttccagatatccggcggcgatgtgcaggtcct 32595

                   
Query: 162   gcaggt 167
             ||||||
Sbjct: 32594 gcaggt 32589



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 512   tgatcctcaaacagaagcttaggggtcaagggatggccttccttgtcggcggtgggtcag 571
             ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 30704 tgatcctcaaacagaagcttaggggtcaagggatggctttccttgttggtggtggatcag 30645



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 388   gatctagcgaactttggtggagaactactttgccagg 424
             |||||||| ||||||||||||||||| ||||||||||
Sbjct: 31023 gatctagcaaactttggtggagaacttctttgccagg 30987



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 164   aggtgatggtgaagtcgcaggacaagttgacggcgaaaccaggtac 209
             |||||||||| ||||| ||||| |||||||| | ||||||||||||
Sbjct: 32491 aggtgatggttaagtcacaggaaaagttgaccgtgaaaccaggtac 32446



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 574   atgcagaaaattcttgctccccgggaggtgattac 608
             ||||||||||||||||| || || |||||||||||
Sbjct: 30182 atgcagaaaattcttgcccctcgtgaggtgattac 30148

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  194 bits (98), Expect = 2e-46
 Identities = 161/182 (88%)
 Strand = Plus / Plus

                                                                            
Query: 203      caggtacaatgtgttacatgtccgggaacattcagatggacaacaattacttgcctgaaa 262
                ||||||||||||| |||||||| || || ||||| | ||||||||| |||||||||||||
Sbjct: 30536572 caggtacaatgtgctacatgtctggtaatattcaaacggacaacaactacttgcctgaaa 30536631

                                                                            
Query: 263      acgacggaggcgtgtggcagtggatatttggaaaaagtataaccagcactgttttcttca 322
                | || ||||| |||||||||||||| ||||| ||||| |||| ||||| |||||||||||
Sbjct: 30536632 atgatggaggtgtgtggcagtggatttttgggaaaagcataagcagcagtgttttcttca 30536691

                                                                            
Query: 323      atcctggccctgatgatggatatgtggggatttctgcgccgtttcctgggaggatactgc 382
                | |||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 30536692 accctggctctgatgatggatatgttgggatttctgcaccatttcctgggagaatactgc 30536751

                  
Query: 383      ct 384
                ||
Sbjct: 30536752 ct 30536753



 Score =  115 bits (58), Expect = 2e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                            
Query: 421      caggcagattctttcctctgctcggtcaatgatgtgtcagtcacaagtacagttgatcag 480
                ||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 30537522 caggcagatgcttttctctgctcagttaatgatgtgtcagtcacaagtacagttgagcag 30537581

                                              
Query: 481      cggccacgcaacattgaaattggtgcagag 510
                 |||| || |||||||||||||||||||||
Sbjct: 30537582 aggccgcgaaacattgaaattggtgcagag 30537611



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 92/104 (88%), Gaps = 2/104 (1%)
 Strand = Plus / Plus

                                                                            
Query: 2        gtcggctcccactgatcgcttctagnaagcttccacagnagctccggcccgccgccatgg 61
                |||||||| |||||||||||||||| ||||||||  |   |||||| ||| |||||||||
Sbjct: 30535493 gtcggctctcactgatcgcttctag-aagcttccggaag-gctccgaccccccgccatgg 30535550

                                                            
Query: 62       ccgcgcccttcttctccacccccttccaaccctacgtctaccag 105
                ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 30535551 ccgcgcccttcttctccacgcctttccagccctacgtctaccag 30535594



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                            
Query: 102      ccagagccagcagggatctgtgacggcgtttcagatatccggtggggatgtgcaggtcct 161
                |||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 30535783 ccagagccaggaaggatctgtgacggcgttccagatatccggcggcgatgtgcaggtcct 30535842

                      
Query: 162      gcaggt 167
                ||||||
Sbjct: 30535843 gcaggt 30535848



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                            
Query: 512      tgatcctcaaacagaagcttaggggtcaagggatggccttccttgtcggcggtgggtcag 571
                ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 30537733 tgatcctcaaacagaagcttaggggtcaagggatggctttccttgttggtggtggatcag 30537792



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 388      gatctagcgaactttggtggagaactactttgccagg 424
                |||||||| ||||||||||||||||| ||||||||||
Sbjct: 30537414 gatctagcaaactttggtggagaacttctttgccagg 30537450



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 164      aggtgatggtgaagtcgcaggacaagttgacggcgaaaccaggtac 209
                |||||||||| ||||| ||||| |||||||| | ||||||||||||
Sbjct: 30535946 aggtgatggttaagtcacaggaaaagttgaccgtgaaaccaggtac 30535991



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 574      atgcagaaaattcttgctccccgggaggtgattac 608
                ||||||||||||||||| || || |||||||||||
Sbjct: 30538255 atgcagaaaattcttgcccctcgtgaggtgattac 30538289



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 51       cgccgccatggccgcgcccttcttc 75
                ||||||||||||||||| |||||||
Sbjct: 27032810 cgccgccatggccgcgctcttcttc 27032834

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>gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, complete sequence
          Length = 183083

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 298    agtataaccagcactgttttct 319
              ||||||||||||||||||||||
Sbjct: 127374 agtataaccagcactgttttct 127353

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>gb|AC093412.3| Homo sapiens chromosome 3 clone RP11-11L6, complete sequence
          Length = 178447

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 426    agattctttcctctgctcggtc 447
              ||||||||||||||||||||||
Sbjct: 106119 agattctttcctctgctcggtc 106140

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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     gcccgccgccatggccgcgcc 68
              |||||||||||||||||||||
Sbjct: 105341 gcccgccgccatggccgcgcc 105361

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>emb|Z36773.1|TPNAPG T.pantotropha (LMD82.5) dctM, napA, napB, napC, napD, napE genes
          Length = 6040

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 44   tccggcccgccgccatggccg 64
            |||||||||||||||||||||
Sbjct: 4059 tccggcccgccgccatggccg 4079

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>emb|AL355490.24| Human DNA sequence from clone RP11-452K12 on chromosome 10 Contains the
              FRAT1 gene for frequently rearranged in advanced T-cell
              lymphomas, the FRAT2 gene  for frequently rearranged in
              advanced T-cell lymphomas 2, two novel genes, the gene for
              a novel protein (FLJ12434,KIAA0690), the PGAM1 gene for
              phosphoglycerate mutase 1 (brain), the CSL4 gene for
              exosomal core protein CSL4, the ZDHHC16 gene for zinc
              finger, DHHC domain containing 16, the 3' end of the MMS19L
              gene for MMS19-like (MET18 homolog, S. cerevisiae), a
              ribosomal protein L12 (RPL12) pseudogene, a ribosomal
              protein L34 (RPL34) pseudogene and four CpG islands,
              complete sequence
          Length = 190803

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    agtataaccagcactgttttc 318
              |||||||||||||||||||||
Sbjct: 155644 agtataaccagcactgttttc 155664

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>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
              sequence
          Length = 149303

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 51     cgccgccatggccgcgcccttcttc 75
              ||||||||||||||||| |||||||
Sbjct: 120487 cgccgccatggccgcgctcttcttc 120511

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>emb|BX908401.14| Zebrafish DNA sequence from clone DKEY-53F14 in linkage group 18,
             complete sequence
          Length = 172346

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 391   ctagcgaactttggtggagaactac 415
             ||||||||||||||||| |||||||
Sbjct: 36674 ctagcgaactttggtggtgaactac 36650

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>dbj|AB207102.1| Acidovorax avenae subsp. avenae Hrp gene cluster, complete cds,
            strain: N1141
          Length = 66987

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   gcccgccgccatggccgcgcc 68
            |||||||||||||||||||||
Sbjct: 7708 gcccgccgccatggccgcgcc 7728

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>emb|BX571831.7| Zebrafish DNA sequence from clone DKEY-266J11 in linkage group 18,
              complete sequence
          Length = 195572

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 391    ctagcgaactttggtggagaactac 415
              ||||||||||||||||| |||||||
Sbjct: 194565 ctagcgaactttggtggtgaactac 194541

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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 170     tggtgaagtcgcaggacaagttgacggcgaaac 202
               ||||||||||||| | ||| |||||||||||||
Sbjct: 2047320 tggtgaagtcgcaagccaatttgacggcgaaac 2047352

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 48    gcccgccgccatggccgcgcccttc 72
             |||||||||||||||||||| ||||
Sbjct: 59630 gcccgccgccatggccgcgcgcttc 59606

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>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 227467

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   atttggaaaaagtataaccag 308
             |||||||||||||||||||||
Sbjct: 70155 atttggaaaaagtataaccag 70135

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>dbj|AP003399.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-448N3, complete
             sequence
          Length = 68801

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   agattctttcctctgctcggt 446
             |||||||||||||||||||||
Sbjct: 50966 agattctttcctctgctcggt 50946

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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    tgcaggtcctgcaggtgatg 171
              ||||||||||||||||||||
Sbjct: 333281 tgcaggtcctgcaggtgatg 333300

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>ref|XM_463339.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  cccgccgccatggccgcgcc 68
           ||||||||||||||||||||
Sbjct: 436 cccgccgccatggccgcgcc 455

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>ref|XM_472267.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1188

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   ccgccgccatggccgcgccc 69
            ||||||||||||||||||||
Sbjct: 1160 ccgccgccatggccgcgccc 1179

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>gb|AC111130.17| Mus musculus chromosome 5, clone RP23-339G19, complete sequence
          Length = 212923

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     cttcttctccacccccttcc 88
              ||||||||||||||||||||
Sbjct: 162794 cttcttctccacccccttcc 162775

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>gb|AY023555.1| Oryza sativa microsatellite MRG5880 containing (TGG)X10, genomic
           sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  cccgccgccatggccgcgcc 68
           ||||||||||||||||||||
Sbjct: 156 cccgccgccatggccgcgcc 137

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>ref|XM_420890.1| PREDICTED: Gallus gallus similar to gamma-SNAP-associated factor 1;
            Rab11-interacting protein (LOC422952), mRNA
          Length = 4828

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 311  ctgttttcttcaatcctggccctg 334
            ||||||||||| ||||||||||||
Sbjct: 1367 ctgttttcttccatcctggccctg 1344

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>gb|AC147611.1| Pan troglodytes BAC clone RP43-115B5 from 7, complete sequence
          Length = 172956

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tgtggcagtggatatttgga 294
             ||||||||||||||||||||
Sbjct: 13516 tgtggcagtggatatttgga 13535

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>gb|AC140370.3| Mus musculus BAC clone RP24-75N6 from chromosome 7, complete sequence
          Length = 189786

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    gatatttggaaaaagtataa 304
              ||||||||||||||||||||
Sbjct: 116977 gatatttggaaaaagtataa 116958

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>gb|AC123876.5| Mus musculus BAC clone RP23-270P19 from chromosome 3, complete sequence
          Length = 203639

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   agtggatatttggaaaaagt 300
             ||||||||||||||||||||
Sbjct: 61279 agtggatatttggaaaaagt 61260

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>ref|XM_764772.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_741_25783_28743) partial mRNA
          Length = 2961

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggcagtggatatttggaaaaagtataac 305
           |||||| ||||| |||||||||||||||
Sbjct: 386 ggcagttgatatatggaaaaagtataac 413

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>gb|AC010719.4| Homo sapiens BAC clone CTD-2227E11 from 7, complete sequence
          Length = 140545

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gatggacaacaattacttgc 256
             ||||||||||||||||||||
Sbjct: 55033 gatggacaacaattacttgc 55052

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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
              complete sequence
          Length = 143093

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ccgccgccatggccgcgccc 69
              ||||||||||||||||||||
Sbjct: 132531 ccgccgccatggccgcgccc 132512

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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
            complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   ccgccgccatggccgcgccc 69
            ||||||||||||||||||||
Sbjct: 8543 ccgccgccatggccgcgccc 8524

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 50       ccgccgccatggccgcgccc 69
                ||||||||||||||||||||
Sbjct: 18916621 ccgccgccatggccgcgccc 18916602

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 49       cccgccgccatggccgcgcc 68
                ||||||||||||||||||||
Sbjct: 21991767 cccgccgccatggccgcgcc 21991786

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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    gatatttggaaaaagtataa 304
              ||||||||||||||||||||
Sbjct: 168184 gatatttggaaaaagtataa 168165

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    attggtgcagagatgatcct 518
              ||||||||||||||||||||
Sbjct: 834273 attggtgcagagatgatcct 834292

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>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1151A10
          Length = 124344

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   cccgccgccatggccgcgcc 68
            ||||||||||||||||||||
Sbjct: 3280 cccgccgccatggccgcgcc 3299

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>dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1129G05
          Length = 132535

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    cccgccgccatggccgcgcc 68
             ||||||||||||||||||||
Sbjct: 73575 cccgccgccatggccgcgcc 73594

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>gb|AY898625.1| Acidovorax avenae subsp. citrulli lytic murein transglycosylase,
            SAM-dependent methyltransferase, HrcC, HrpD5, HrpB1,
            HrpB2, HrcJ, HrpB4, HrpF, HrcN, hypothetical protein,
            GALA, HrcT, HrcU, HrcV, HpaP, HrcQ, HrcR, HrcS, HpaA,
            HpaB, HrpG, HrpX, and chorismate mutase genes, complete
            cds; anthranilate para-aminobenzoate synthase component I
            gene, partial cds; and unknown genes
          Length = 36584

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   cccgccgccatggccgcgcc 68
            ||||||||||||||||||||
Sbjct: 3715 cccgccgccatggccgcgcc 3734


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,991,421
Number of Sequences: 3902068
Number of extensions: 4991421
Number of successful extensions: 103139
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102382
Number of HSP's gapped (non-prelim): 756
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result