ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5n02 |
|---|---|
| Clone Library Name | barley_pub |
>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)| Length = 449 Score = 77.8 bits (190), Expect = 2e-14 Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 3/107 (2%) Frame = +2 Query: 161 SMNAFDIIASSPSFDLSGLFEERGE---QLRFVSSAPVNTIIXKLEEIAGQVSFTARTKD 331 SMNAF++I+ + + +L LFE + E + RF S P II K+EE A + F + K+ Sbjct: 317 SMNAFELISLNQALNLDNLFEAKKEYKRETRFTSQCPPKEIITKIEEAAKPLGFDIQKKN 376 Query: 332 CQVSFEATRNGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQF 472 ++ E + G KG L ++T++FQ+ P L +V++ K GDT E+++F Sbjct: 377 YKMRMENLKAGRKGNLNVATEVFQVAPSLHVVELKKAKGDTLEFQKF 423
>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC| 2.7.11.1) (Serine/threonine-protein kinase ATPK10) (SOS2-like protein kinase PKS3) (SOS-interacting protein 2) (SNF1-related kinase 3.1) Length = 421 Score = 72.8 bits (177), Expect = 8e-13 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 6/129 (4%) Frame = +2 Query: 131 TTEPRIRRIKSMNAFDIIASSPSFDLSGLFE--ERGEQLRFVSSAPVNTIIXKLEEIAGQ 304 + E +R ++NAF+II+ S FDLSGLFE E E++RF S+ + I KL EI Sbjct: 293 SAEKEKKRCINLNAFEIISLSTGFDLSGLFEKGEEKEEMRFTSNREASEITEKLVEIGKD 352 Query: 305 VSFTARTKD----CQVSFEATRNGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQF 472 + R K+ ++S EAT + ++F++ P MV + K GDTAEY++ Sbjct: 353 LKMKVRKKEHEWRVKMSAEAT--------VVEAEVFEIAPSYHMVVLKKSGGDTAEYKRV 404 Query: 473 CGSELKPGL 499 ++P L Sbjct: 405 MKESIRPAL 413
>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC| 2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein) Length = 446 Score = 71.2 bits (173), Expect = 2e-12 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 4/107 (3%) Frame = +2 Query: 164 MNAFDIIASSPSFDLSGLFEERGE----QLRFVSSAPVNTIIXKLEEIAGQVSFTARTKD 331 MNAF++I S +LS LF+ R + Q RFVS + II +E +A + F + T++ Sbjct: 310 MNAFEMITLSQGLNLSALFDRRQDFVKRQTRFVSRREPSEIIANIEAVANSMGFKSHTRN 369 Query: 332 CQVSFEATRNGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQF 472 + E + G LA+ +I+++ P L MV V K AG+T EY +F Sbjct: 370 FKTRLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVRKAAGETLEYHKF 416
>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC| 2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related kinase 3.16) Length = 444 Score = 61.6 bits (148), Expect = 2e-09 Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 5/114 (4%) Frame = +2 Query: 164 MNAFDIIASSPSFDLSGLFEERG---EQLRFVSSAPVNTIIXKLEEIAGQVSFTARTKDC 334 +NAF +I S DLSG FE+ ++RF S++ ++ K+E ++ F+ + K Sbjct: 318 INAFQLIGMSSFLDLSGFFEQENVSERRIRFTSNSSAKDLLEKIETAVTEMGFSVQKKHA 377 Query: 335 QVSFEATRNGHKG--ALAISTKIFQLTPELVMVQVCKKAGDTAEYRQFCGSELK 490 ++ + KG L+++ ++F++ P L +V++ K GD+ YRQ LK Sbjct: 378 KLRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERLLK 431
>CPK11_ARATH (O22932) CBL-interacting serine/threonine-protein kinase 11 (EC| 2.7.11.1) (SOS2-like protein kinase PKS5) (SOS-interacting protein 4) (SNF1-related kinase 3.22) Length = 435 Score = 53.5 bits (127), Expect = 5e-07 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Frame = +2 Query: 137 EPRIRRIKSMNAFDIIASSPSFDLSGLF----EERGEQLRFVSSAPVNTIIXKLEEIAGQ 304 E + +KS+NAFD+I+ S DLSGLF GE RF+S + ++E A + Sbjct: 298 ESSLEAVKSLNAFDLISYSSGLDLSGLFAGCSNSSGESERFLSEKSPEMLAEEVEGFARE 357 Query: 305 VSFTARTKDCQVSFEATRNGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQFCGSE 484 + + K + + G G I I +L LV+V+ ++ GD Y++ + Sbjct: 358 ENLRMKKKK-EEEYGFEMEGQNGKFGIGICISRLNDLLVVVEARRRGGDGDCYKEMWNGK 416 Query: 485 LK 490 L+ Sbjct: 417 LR 418
>PPCK_CHLLI (Q08262) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 618 Score = 35.0 bits (79), Expect = 0.18 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 25/118 (21%) Frame = -1 Query: 403 LEYLGGYGQRSLVPISCRLEAHLAILGARREANLPRDLLQLXDDGVHRRAGHETQLLAA- 227 + Y GY +L+ C +A AR E L +L L GV AG + + AA Sbjct: 212 VSYSSGYNGNTLLGKKC-FALRIASSMARDEGWLAEHMLIL---GVESPAGEKDYVAAAF 267 Query: 226 ----------LLKQPGQIEAWR---GGDDVE--------RVHALDPSYAWLG---GTS 125 ++ PG++E W+ GDD+ R+HA++P Y + G GTS Sbjct: 268 PSACGKTNFAMIIPPGEMEGWKITTVGDDIRLDQQGKDGRLHAINPEYGFFGVAPGTS 325
>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1273 Score = 33.1 bits (74), Expect = 0.70 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -1 Query: 463 VFSSVSGFLAYLDHDELRRELEYLGGYGQRSLVPISCRLEAHLAILGARREA 308 +FS + + +L+HD+ R L +G QR VP+ R EA + G REA Sbjct: 595 IFSVAASLIPFLEHDDANRAL--MGANMQRQAVPL-LRAEAPMVATGMEREA 643
>RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1272 Score = 33.1 bits (74), Expect = 0.70 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -1 Query: 463 VFSSVSGFLAYLDHDELRRELEYLGGYGQRSLVPISCRLEAHLAILGARREA 308 +FS + + +L+HD+ R L +G QR VP+ R EA + G REA Sbjct: 595 IFSVAASLIPFLEHDDANRAL--MGANMQRQAVPL-LRAEAPMVATGMEREA 643
>Y047_MYCBO (P59967) Hypothetical protein Mb0047c| Length = 367 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 146 IRRIKSMNAFDIIASSPSFDLS-GLFEERGEQLRFVSSAPVNTIIXKLEEIAGQVSFTAR 322 +R +K + AFD+ A FDLS +F ++ AP N I+ + + G + A Sbjct: 59 VRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYYAD 118 Query: 323 T 325 T Sbjct: 119 T 119
>Y046_MYCTU (P71703) Hypothetical protein Rv0046c/MT0052| Length = 367 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 146 IRRIKSMNAFDIIASSPSFDLS-GLFEERGEQLRFVSSAPVNTIIXKLEEIAGQVSFTAR 322 +R +K + AFD+ A FDLS +F ++ AP N I+ + + G + A Sbjct: 59 VRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYYAD 118 Query: 323 T 325 T Sbjct: 119 T 119
>GLNA_GIBFU (Q9C2U9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 353 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = +2 Query: 434 CKKAGDT-AEYRQFCGSELKPGLRGSR----GWPA*GWPSPDGECCLKF*RIYCGVKSSR 598 C K DT A+ G E + L GS GWPA G+P+P GE YCGV + + Sbjct: 114 CVKVMDTYADDEPLFGLEQEYTLLGSDNRPYGWPAGGFPAPQGE-------YYCGVGTGK 166
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = -2 Query: 549 SPSGEGHPQAGHPRDPRRPGLSSLPQNCRYSAVSPAFLHTWTMTSS 412 SPS P A H + P RPG S+ +SA SP + T TSS Sbjct: 462 SPSSPSGPSAVHNQKPSRPGSSN---GTVHSAASPTMVTTMATTSS 504
>DYIN_DROME (Q24246) Dynein intermediate chain, cytosolic (DH IC) (Cytoplasmic| dynein intermediate chain) (Protein short wing) Length = 663 Score = 31.2 bits (69), Expect = 2.6 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Frame = +2 Query: 104 EKMHIAAARTTEPRIRRIKSMNAFDIIASSPSFDLSGLFEER---GEQLRFVSSAPVNTI 274 +K +AA R + R RR K + + A ++R E L + APV+ + Sbjct: 10 KKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEV 69 Query: 275 IXKLEEIAGQVSFTARTKDCQVSFEATRNGHKG 373 + L + S + T+ S +AT NG G Sbjct: 70 LSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG 102
>HEMO_RAT (P20059) Hemopexin precursor| Length = 460 Score = 30.8 bits (68), Expect = 3.5 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Frame = -2 Query: 543 SGEGHPQAGHPRDPR---RPGLSSLPQNCRYSAVSPAFLHTWTMTSSGVSWNILVDMASA 373 +G H + HP R PGLS+L + R + + + H W + SS W+ Sbjct: 240 NGTAHGNSTHPMHSRCNADPGLSALLSDHRGATYAFSGSHYWRLDSSRDGWHSWPIAHHW 299 Query: 372 PLCPFLVASKLTWQSLVRAVKLT 304 P P V + +W V ++ T Sbjct: 300 PQGPSAVDAAFSWDEKVYLIQGT 322
>ZN688_HUMAN (Q8WV14) Zinc finger protein 688| Length = 782 Score = 30.4 bits (67), Expect = 4.5 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 383 WPALPCAHFLSPRSSLGNPW 324 WP++ C F +PR S NPW Sbjct: 155 WPSVACPEFCNPRQSPMNPW 174
>SYN_UREPA (Q9PQC6) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 454 Score = 30.0 bits (66), Expect = 5.9 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Frame = +2 Query: 113 HIAAARTTEPRIRRIKSMNAFDIIASSPSFDLSGLFEERGEQLRFVSSAPVNTIIXKLEE 292 H+A EP + + DI+ + + E+ ++L F++ +I KL++ Sbjct: 227 HLAEFWMIEPEMAFVDLKGMQDIVEDLVKHVIKAVLEKNQQELEFLAQRNDENLIKKLQK 286 Query: 293 IAGQVSFTARTKDC-QVSFEATRNGHK 370 + KD ++ +A +NGH+ Sbjct: 287 VVESKFERIEYKDAVKILADAVKNGHQ 313
>GLNA_FUSSH (Q9UUN6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 356 Score = 30.0 bits (66), Expect = 5.9 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +2 Query: 434 CKKAGDT-AEYRQFCGSELKPGLRGSR----GWPA*GWPSPDGECCLKF*RIYCGVKSSR 598 C K DT AE + G E + L G GWP G+P+P GE YCGV + + Sbjct: 116 CVKVMDTYAEDEPWFGLEQEYTLLGPDNRPYGWPTGGFPAPQGE-------YYCGVGTGK 168
>COAE_DEIRA (Q9RT73) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 207 Score = 29.6 bits (65), Expect = 7.7 Identities = 22/59 (37%), Positives = 26/59 (44%) Frame = -1 Query: 364 PISCRLEAHLAILGARREANLPRDLLQLXDDGVHRRAGHETQLLAALLKQPGQIEAWRG 188 P+ RLE LA G RE L RD QL + RRA +L G +EA G Sbjct: 144 PLELRLERALARGGLTREDILARDARQLSSEEKRRRA-------TIVLDNSGPLEALEG 195
>RIR4_ECOLI (P37146) Ribonucleoside-diphosphate reductase 2 beta subunit (EC| 1.17.4.1) (Ribonucleotide reductase 2) (R2F protein) Length = 319 Score = 29.6 bits (65), Expect = 7.7 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -2 Query: 306 TCPAISSSLXMMVFTGA--LDTKRNCSPRSSNSPDRSKLGEEAMMSN 172 T + L M VFTG LDT +N S PD EEA++SN Sbjct: 47 TLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSN 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,151,691 Number of Sequences: 219361 Number of extensions: 1656058 Number of successful extensions: 6411 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6091 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6398 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
