ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 5e-50
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 133 6e-28
4emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa... 133 6e-28
5ref|XM_473497.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
6emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 58 3e-05
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
8dbj|AK104521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9dbj|AK072630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
10dbj|AK060894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
11gb|AC146039.2| Pan troglodytes BAC clone RP43-97H7 from 7, compl... 44 0.41
12gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete... 44 0.41
13gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 6.4
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.4
15ref|XM_417986.1| PREDICTED: Gallus gallus similar to hypothetica... 40 6.4
16gb|AY450908.1| Erythrocebus patas isolate R230 chromosome X inte... 40 6.4
17gb|AY450907.1| Erythrocebus patas isolate R228 chromosome X inte... 40 6.4
18gb|AY450905.1| Cercopithecus solatus isolate Omboue chromosome X... 40 6.4
19gb|AY450900.1| Cercopithecus lhoesti isolate 94019 chromosome X ... 40 6.4
20gb|AY450899.1| Cercopithecus lhoesti isolate Antwerp chromosome ... 40 6.4
21gb|AY450894.1| Cercopithecus aethiops isolate 90.017 chromosome ... 40 6.4
22gb|AY450893.1| Cercopithecus aethiops isolate VE98007 chromosome... 40 6.4
23gb|AC113495.15| Mus musculus chromosome 9, clone RP23-361O11, co... 40 6.4
24gb|AC007298.17| Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Par... 40 6.4
25gb|AC104594.2| Homo sapiens BAC clone RP13-620M21 from 7, comple... 40 6.4
26gb|AC183612.3| Pan troglodytes BAC clone CH251-194C16 from chrom... 40 6.4
27emb|Z70272.1|HSJ30E17 Human DNA sequence from clone RP1-30E17 on... 40 6.4
28emb|AL445523.11| Human DNA sequence from clone RP11-231N9 on chr... 40 6.4
29emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chro... 40 6.4
30emb|AL357772.15| Human DNA sequence from clone RP11-71E22 on chr... 40 6.4
31emb|AL354913.11| Human DNA sequence from clone RP11-69O18 on chr... 40 6.4
32emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chro... 40 6.4
33emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chr... 40 6.4
34gb|AC092896.9| Homo sapiens 3 BAC RP11-274J15 (Roswell Park Canc... 40 6.4
35gb|AC093928.2| Homo sapiens chromosome 3 clone RP11-241K3, compl... 40 6.4
36emb|CR456683.7| Zebrafish DNA sequence from clone CH211-39I13 in... 40 6.4
37gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.4
38gb|AC087878.7| Homo sapiens chromosome 15, clone RP11-62C7, comp... 40 6.4
39emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 40 6.4
40dbj|AK095880.1| Homo sapiens cDNA FLJ38561 fis, clone HCHON2003676 40 6.4
41dbj|AK091968.1| Homo sapiens cDNA FLJ34649 fis, clone KIDNE2017603 40 6.4
42gb|AC116992.2| Homo sapiens chromosome 3 clone RP11-668D4, compl... 40 6.4
43gb|AC097358.2| Homo sapiens chromosome 3 clone RP11-157F20, comp... 40 6.4
44gb|AC105031.5| Homo sapiens chromosome 8, clone CTD-2272D18, com... 40 6.4
45gb|AC104343.3| Homo sapiens chromosome 8, clone RP11-822K17, com... 40 6.4
46gb|AC095048.3| Homo sapiens BAC clone RP11-239A9 from 4, complet... 40 6.4
47gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, comple... 40 6.4
48gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, comple... 40 6.4
49gb|AC092545.3| Homo sapiens BAC clone RP11-586A2 from 4, complet... 40 6.4
50gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, compl... 40 6.4
51gb|AC092038.3| Homo sapiens chromosome 3 clone RP11-89F18, compl... 40 6.4
52gb|AC161113.2| Mus musculus BAC clone RP24-362N9 from chromosome... 40 6.4
53gb|AC145619.4| Homo sapiens BAC clone RP11-722J20 from chromosom... 40 6.4
54gb|AC017037.10|AC017037 Homo sapiens BAC clone RP11-312A15 from ... 40 6.4
55gb|AC112720.2| Homo sapiens BAC clone RP11-696L6 from 2, complet... 40 6.4
56gb|AC083939.4| Homo sapiens BAC clone RP11-308C20 from 2, comple... 40 6.4
57gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, comple... 40 6.4
58gb|AC074264.3| Homo sapiens BAC clone RP11-410L9 from 2, complet... 40 6.4
59gb|AC093833.2| Homo sapiens BAC clone RP11-405K23 from 2, comple... 40 6.4
60gb|AC128708.8| Homo sapiens 12 BAC RP11-714L1 (Roswell Park Canc... 40 6.4
61gb|AC104259.14| Homo sapiens chromosome 15, clone CTD-2525I4, co... 40 6.4
62dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.4
63dbj|BS000245.1| Pan troglodytes chromosome 22 clone:PTB-059I14, ... 40 6.4
64gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19... 40 6.4
65emb|BX248496.13| Zebrafish DNA sequence from clone CH211-236J4 i... 40 6.4
66dbj|AP000339.2| Homo sapiens genomic DNA, chromosome 21 clone:CM... 40 6.4
67dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.4
68gb|AY899218.1| Cercopithecus solatus X chromosome intergenic region 40 6.4
69gb|AY899217.1| Cercopithecus lhoesti X chromosome intergenic region 40 6.4
70gb|AY899216.1| Cercopithecus aethiops X chromosome intergenic re... 40 6.4
71gb|AY899215.1| Erythrocebus patas X chromosome intergenic region 40 6.4
72gb|AC118730.5| Mus musculus chromosome 8, clone RP24-169O12, com... 40 6.4
73emb|AL928954.9| Zebrafish DNA sequence from clone CH211-127D4 in... 40 6.4
74gb|AC013489.17| Homo sapiens chromosome 15, clone RP11-97O12, co... 40 6.4
75dbj|AP000217.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter... 40 6.4
76dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 6.4 
>dbj|AK061316.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D08, full
           insert sequence
          Length = 1709

 Score =  206 bits (104), Expect = 5e-50
 Identities = 247/294 (84%), Gaps = 2/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 172 cgaggaggtcgcccctgggcttgagggccatggtgctcctgatgcacgtgttcttcgtcg 231
           ||||||||||| | |||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct: 198 cgaggaggtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcg 257

                                                                       
Query: 232 gcgccgtcttcctgctcgatccgaccctcgataggncgggatccacgaggagccgtggta 291
           ||||||||||||||||||||||||||||||| |||   | |||| ||||||||| |||||
Sbjct: 258 gcgccgtcttcctgctcgatccgaccctcgacaggc--gaatccgcgaggagccctggta 315

                                                                       
Query: 292 tattggagtgtatggtgtgcttgttctgatcgccttagcgcaatacttctacactgctgg 351
            || || |  ||||| | ||||||| |||||||||||| ||| || |||||||| |||||
Sbjct: 316 cataggggcatatggagcgcttgttttgatcgccttagtgcagtatttctacacagctgg 375

                                                                       
Query: 352 ttcatctccaggctatgttattgatgcaatgcaagccagtggtgggatgcatgcaacctt 411
           ||||||||| || |||||| | ||||||||| ||||  ||     |||||| ||||||| 
Sbjct: 376 ttcatctcctgggtatgttctcgatgcaatgaaagctggttcgacgatgcacgcaaccta 435

                                                                 
Query: 412 catcaatactgccactcttccaaaacaatccagttcaaaacatggaagcttaaa 465
           ||||||||||||||||||| | ||| |||| ||| ||||  |||| ||||||||
Sbjct: 436 catcaatactgccactctttcgaaataatcaagtccaaacaatggtagcttaaa 489
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  133 bits (67), Expect = 6e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                            
Query: 172      cgaggaggtcgcccctgggcttgagggccatggtgctcctgatgcacgtgttcttcgtcg 231
                ||||||||||| | |||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct: 17660590 cgaggaggtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcg 17660649

                                               
Query: 232      gcgccgtcttcctgctcgatccgaccctcga 262
                |||||||||||||||||||||||||||||||
Sbjct: 17660650 gcgccgtcttcctgctcgatccgaccctcga 17660680



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 310      gcttgttctgatcgccttagcgcaatacttctacactgctggttcatctcc 360
                ||||||| |||||||||||| ||| || |||||||| ||||||||||||||
Sbjct: 17661202 gcttgttttgatcgccttagtgcagtatttctacacagctggttcatctcc 17661252



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 397      gatgcatgcaaccttcatcaatactgccactctt 430
                |||||| ||||||| |||||||||||||||||||
Sbjct: 17661374 gatgcacgcaacctacatcaatactgccactctt 17661407
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  133 bits (67), Expect = 6e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                            
Query: 172      cgaggaggtcgcccctgggcttgagggccatggtgctcctgatgcacgtgttcttcgtcg 231
                ||||||||||| | |||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct: 17614961 cgaggaggtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcg 17615020

                                               
Query: 232      gcgccgtcttcctgctcgatccgaccctcga 262
                |||||||||||||||||||||||||||||||
Sbjct: 17615021 gcgccgtcttcctgctcgatccgaccctcga 17615051



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 310      gcttgttctgatcgccttagcgcaatacttctacactgctggttcatctcc 360
                ||||||| |||||||||||| ||| || |||||||| ||||||||||||||
Sbjct: 17615573 gcttgttttgatcgccttagtgcagtatttctacacagctggttcatctcc 17615623



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 397      gatgcatgcaaccttcatcaatactgccactctt 430
                |||||| ||||||| |||||||||||||||||||
Sbjct: 17615745 gatgcacgcaacctacatcaatactgccactctt 17615778
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>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 162200

 Score =  133 bits (67), Expect = 6e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                          
Query: 172    cgaggaggtcgcccctgggcttgagggccatggtgctcctgatgcacgtgttcttcgtcg 231
              ||||||||||| | |||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct: 152926 cgaggaggtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcg 152985

                                             
Query: 232    gcgccgtcttcctgctcgatccgaccctcga 262
              |||||||||||||||||||||||||||||||
Sbjct: 152986 gcgccgtcttcctgctcgatccgaccctcga 153016



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 310    gcttgttctgatcgccttagcgcaatacttctacactgctggttcatctcc 360
              ||||||| |||||||||||| ||| || |||||||| ||||||||||||||
Sbjct: 153538 gcttgttttgatcgccttagtgcagtatttctacacagctggttcatctcc 153588



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 397    gatgcatgcaaccttcatcaatactgccactctt 430
              |||||| ||||||| |||||||||||||||||||
Sbjct: 153710 gatgcacgcaacctacatcaatactgccactctt 153743
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>ref|XM_473497.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1020

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 204 gtgctcctgatgcacgtgttcttcgtcggcgccgtcttcctgctcgatccgac 256
           ||||| ||| |||||| | | ||| ||||||||||||||||||||||||||||
Sbjct: 100 gtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgac 152
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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
              complete sequence
          Length = 147806

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 204    gtgctcctgatgcacgtgttcttcgtcggcgccgtcttcctgctcgatccgac 256
              ||||| ||| |||||| | | ||| ||||||||||||||||||||||||||||
Sbjct: 111972 gtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgac 112024
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 204      gtgctcctgatgcacgtgttcttcgtcggcgccgtcttcctgctcgatccgac 256
                ||||| ||| |||||| | | ||| ||||||||||||||||||||||||||||
Sbjct: 28104747 gtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgac 28104799
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>dbj|AK104521.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E08, full
           insert sequence
          Length = 1360

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 204 gtgctcctgatgcacgtgttcttcgtcggcgccgtcttcctgctcgatccgac 256
           ||||| ||| |||||| | | ||| ||||||||||||||||||||||||||||
Sbjct: 241 gtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgac 293
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>dbj|AK072630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130P03, full
           insert sequence
          Length = 1411

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 204 gtgctcctgatgcacgtgttcttcgtcggcgccgtcttcctgctcgatccgac 256
           ||||| ||| |||||| | | ||| ||||||||||||||||||||||||||||
Sbjct: 287 gtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgac 339
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>dbj|AK060894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C07, full
           insert sequence
          Length = 1360

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 204 gtgctcctgatgcacgtgttcttcgtcggcgccgtcttcctgctcgatccgac 256
           ||||| ||| |||||| | | ||| ||||||||||||||||||||||||||||
Sbjct: 241 gtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgac 293
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>gb|AC146039.2| Pan troglodytes BAC clone RP43-97H7 from 7, complete sequence
          Length = 144149

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 331   gcaatacttctacactgctggt 352
             ||||||||||||||||||||||
Sbjct: 15977 gcaatacttctacactgctggt 15956
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>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence
          Length = 182627

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 331    gcaatacttctacactgctggt 352
              ||||||||||||||||||||||
Sbjct: 135716 gcaatacttctacactgctggt 135737
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>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 432    caaaacaatccagttcaaaacatggaag 459
              |||||| ||||||||||||| |||||||
Sbjct: 177449 caaaaccatccagttcaaaaaatggaag 177476
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    gcgccgtcttcctgctcgat 251
              ||||||||||||||||||||
Sbjct: 450543 gcgccgtcttcctgctcgat 450524
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>ref|XM_417986.1| PREDICTED: Gallus gallus similar to hypothetical protein
           (LOC419859), mRNA
          Length = 2543

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 10  agggcttcttcaccggtaaacgtcgtgtccgg 41
           ||||||||||||| || |||| ||||||||||
Sbjct: 962 agggcttcttcacaggaaaacctcgtgtccgg 931
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>gb|AY450908.1| Erythrocebus patas isolate R230 chromosome X intergenic region
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1418 aatacttctacactgctggt 1437
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>gb|AY450907.1| Erythrocebus patas isolate R228 chromosome X intergenic region
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1418 aatacttctacactgctggt 1437
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>gb|AY450905.1| Cercopithecus solatus isolate Omboue chromosome X intergenic region
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1418 aatacttctacactgctggt 1437
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>gb|AY450900.1| Cercopithecus lhoesti isolate 94019 chromosome X intergenic region
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1418 aatacttctacactgctggt 1437
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>gb|AY450899.1| Cercopithecus lhoesti isolate Antwerp chromosome X intergenic region
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1418 aatacttctacactgctggt 1437
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>gb|AY450894.1| Cercopithecus aethiops isolate 90.017 chromosome X intergenic region
          Length = 1552

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1414 aatacttctacactgctggt 1433
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>gb|AY450893.1| Cercopithecus aethiops isolate VE98007 chromosome X intergenic region
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1418 aatacttctacactgctggt 1437
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>gb|AC113495.15| Mus musculus chromosome 9, clone RP23-361O11, complete sequence
          Length = 195356

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 334    atacttctacactgctggttcatctcca 361
              |||||||||||||||| |||||||||||
Sbjct: 132653 atacttctacactgct-gttcatctcca 132627
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>gb|AC007298.17| Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 201572

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 41801 aatacttctacactgctggt 41820
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>gb|AC104594.2| Homo sapiens BAC clone RP13-620M21 from 7, complete sequence
          Length = 154665

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 152437 aatacttctacactgctggt 152418
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>gb|AC183612.3| Pan troglodytes BAC clone CH251-194C16 from chromosome 12, complete
             sequence
          Length = 135756

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 33770 aatacttctacactgctggt 33751
to top
>emb|Z70272.1|HSJ30E17 Human DNA sequence from clone RP1-30E17 on chromosome X Contains a
             ribosomal protein L7a (RPL7A) pseudogene and part of a
             novel gene, complete sequence
          Length = 81984

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 48413 aatacttctacactgctggt 48432
to top
>emb|AL445523.11| Human DNA sequence from clone RP11-231N9 on chromosome X Contains a
             karyopherin alpha 2 (RAG cohort 1, importin alpha 1)
             (KPNA2) pseudogene and a chaperonin containing TCP1,
             subunit 4 (delta) (CCT4) pseudogene, complete sequence
          Length = 157946

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 15160 aatacttctacactgctggt 15141
to top
>emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chromosome 13 Contains a
             heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
             pseudogene and a novel pseudogene (KIAA1935 FLJ31359),
             complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 57304 aatacttctacactgctggt 57323
to top
>emb|AL357772.15| Human DNA sequence from clone RP11-71E22 on chromosome 9 Contains a novel
              pseudogene and the 5' end of a novel gene, complete
              sequence
          Length = 162503

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 128226 aatacttctacactgctggt 128245
to top
>emb|AL354913.11| Human DNA sequence from clone RP11-69O18 on chromosome 6 Contains a
            pseudogene similar to part of glucosaminyl (N-acetyl)
            transferase 1 (GCNT1), complete sequence
          Length = 106233

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 2644 aatacttctacactgctggt 2663
to top
>emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chromosome 13 Contains a
             meningioma expressed antigen 6 (coiled-coil proline-rich)
             (MGEA6) pseudogene, a novel gene and the 3' end of the
             TBC1D4 gene for TBC1 domain family, member 4 (KIAA0603),
             complete sequence
          Length = 158310

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 83880 aatacttctacactgctggt 83861
to top
>emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chromosome 13 Contains part
              of the GPC6 gene for glypican 6 and a novel gene, complete
              sequence
          Length = 173736

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 104151 aatacttctacactgctggt 104132
to top
>gb|AC092896.9| Homo sapiens 3 BAC RP11-274J15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170330

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 33529 aatacttctacactgctggt 33510
to top
>gb|AC093928.2| Homo sapiens chromosome 3 clone RP11-241K3, complete sequence
          Length = 165203

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 2388 aatacttctacactgctggt 2369
to top
>emb|CR456683.7| Zebrafish DNA sequence from clone CH211-39I13 in linkage group 13,
             complete sequence
          Length = 166196

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aaacaatccagttcaaaaca 453
             ||||||||||||||||||||
Sbjct: 61541 aaacaatccagttcaaaaca 61560
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     ccgccgccgagccaggcgcc 155
               ||||||||||||||||||||
Sbjct: 5554577 ccgccgccgagccaggcgcc 5554596
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>gb|AC087878.7| Homo sapiens chromosome 15, clone RP11-62C7, complete sequence
          Length = 166485

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 63242 aatacttctacactgctggt 63223
to top
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    tccaaaacaatccagttcaa 449
              ||||||||||||||||||||
Sbjct: 130334 tccaaaacaatccagttcaa 130315
to top
>dbj|AK095880.1| Homo sapiens cDNA FLJ38561 fis, clone HCHON2003676
          Length = 2167

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 1400 aatacttctacactgctggt 1419
to top
>dbj|AK091968.1| Homo sapiens cDNA FLJ34649 fis, clone KIDNE2017603
          Length = 3417

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 333 aatacttctacactgctggt 352
           ||||||||||||||||||||
Sbjct: 692 aatacttctacactgctggt 711
to top
>gb|AC116992.2| Homo sapiens chromosome 3 clone RP11-668D4, complete sequence
          Length = 204162

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 19036 aatacttctacactgctggt 19017
to top
>gb|AC097358.2| Homo sapiens chromosome 3 clone RP11-157F20, complete sequence
          Length = 154606

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 133493 aatacttctacactgctggt 133474
to top
>gb|AC105031.5| Homo sapiens chromosome 8, clone CTD-2272D18, complete sequence
          Length = 111327

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 27493 aatacttctacactgctggt 27474
to top
>gb|AC104343.3| Homo sapiens chromosome 8, clone RP11-822K17, complete sequence
          Length = 203753

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 39039 aatacttctacactgctggt 39058
to top
>gb|AC095048.3| Homo sapiens BAC clone RP11-239A9 from 4, complete sequence
          Length = 123661

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 120388 aatacttctacactgctggt 120369
to top
>gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, complete sequence
          Length = 144277

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 95862 aatacttctacactgctggt 95881
to top
>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence
          Length = 193024

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 112381 aatacttctacactgctggt 112400
to top
>gb|AC092545.3| Homo sapiens BAC clone RP11-586A2 from 4, complete sequence
          Length = 96638

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 61772 aatacttctacactgctggt 61753
to top
>gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, complete sequence
          Length = 144356

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 74144 aatacttctacactgctggt 74125
to top
>gb|AC092038.3| Homo sapiens chromosome 3 clone RP11-89F18, complete sequence
          Length = 170948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 85726 aatacttctacactgctggt 85707
to top
>gb|AC161113.2| Mus musculus BAC clone RP24-362N9 from chromosome 9, complete sequence
          Length = 171642

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 334   atacttctacactgctggttcatctcca 361
             |||||||||||||||| |||||||||||
Sbjct: 67443 atacttctacactgct-gttcatctcca 67417
to top
>gb|AC145619.4| Homo sapiens BAC clone RP11-722J20 from chromosome 2, complete sequence
          Length = 152973

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 26245 aatacttctacactgctggt 26226
to top
>gb|AC017037.10|AC017037 Homo sapiens BAC clone RP11-312A15 from 4, complete sequence
          Length = 186106

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 61433 aatacttctacactgctggt 61452
to top
>gb|AC112720.2| Homo sapiens BAC clone RP11-696L6 from 2, complete sequence
          Length = 96416

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 34607 aatacttctacactgctggt 34588
to top
>gb|AC083939.4| Homo sapiens BAC clone RP11-308C20 from 2, complete sequence
          Length = 116121

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 21392 aatacttctacactgctggt 21373
to top
>gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, complete sequence
          Length = 199385

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 54361 aatacttctacactgctggt 54342
to top
>gb|AC074264.3| Homo sapiens BAC clone RP11-410L9 from 2, complete sequence
          Length = 122472

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 61925 aatacttctacactgctggt 61906
to top
>gb|AC093833.2| Homo sapiens BAC clone RP11-405K23 from 2, complete sequence
          Length = 112968

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 86696 aatacttctacactgctggt 86715
to top
>gb|AC128708.8| Homo sapiens 12 BAC RP11-714L1 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 102748

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 8383 aatacttctacactgctggt 8364
to top
>gb|AC104259.14| Homo sapiens chromosome 15, clone CTD-2525I4, complete sequence
          Length = 155753

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 120257 aatacttctacactgctggt 120238
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     tgttcttcgtcggcgccgtc 239
               ||||||||||||||||||||
Sbjct: 2948104 tgttcttcgtcggcgccgtc 2948085
to top
>dbj|BS000245.1| Pan troglodytes chromosome 22 clone:PTB-059I14, map 22, complete
              sequences
          Length = 201304

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 116514 aatacttctacactgctggt 116533
to top
>gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 154685

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 120914 aatacttctacactgctggt 120933
to top
>emb|BX248496.13| Zebrafish DNA sequence from clone CH211-236J4 in linkage group 23,
             complete sequence
          Length = 159424

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   cttccaaaacaatccagttc 447
             ||||||||||||||||||||
Sbjct: 90074 cttccaaaacaatccagttc 90093
to top
>dbj|AP000339.2| Homo sapiens genomic DNA, chromosome 21 clone:CMP21-9H11, complete
             sequence
          Length = 78240

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 13370 aatacttctacactgctggt 13389
to top
>dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, section 104/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    aatacttctacactgctggt 352
              ||||||||||||||||||||
Sbjct: 269497 aatacttctacactgctggt 269516
to top
>gb|AY899218.1| Cercopithecus solatus X chromosome intergenic region
          Length = 9225

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 6240 aatacttctacactgctggt 6259
to top
>gb|AY899217.1| Cercopithecus lhoesti X chromosome intergenic region
          Length = 9239

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 6239 aatacttctacactgctggt 6258
to top
>gb|AY899216.1| Cercopithecus aethiops X chromosome intergenic region
          Length = 9227

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 6232 aatacttctacactgctggt 6251
to top
>gb|AY899215.1| Erythrocebus patas X chromosome intergenic region
          Length = 9270

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  aatacttctacactgctggt 352
            ||||||||||||||||||||
Sbjct: 6256 aatacttctacactgctggt 6275
to top
>gb|AC118730.5| Mus musculus chromosome 8, clone RP24-169O12, complete sequence
          Length = 164561

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 432    caaaacaatccagttcaaaacatggaag 459
              |||||| ||||||||||||| |||||||
Sbjct: 139205 caaaaccatccagttcaaaaaatggaag 139178
to top
>emb|AL928954.9| Zebrafish DNA sequence from clone CH211-127D4 in linkage group 5,
              complete sequence
          Length = 222888

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    tccaaaacaatccagttcaa 449
              ||||||||||||||||||||
Sbjct: 215643 tccaaaacaatccagttcaa 215662
to top
>gb|AC013489.17| Homo sapiens chromosome 15, clone RP11-97O12, complete sequence
          Length = 175836

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 44708 aatacttctacactgctggt 44689
to top
>dbj|AP000217.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter, Ter region, clone
             f27E1-T1136, segment 3/4, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 10038 aatacttctacactgctggt 10057
to top
>dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2317D23, complete
             sequence
          Length = 78200

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aatacttctacactgctggt 352
             ||||||||||||||||||||
Sbjct: 15380 aatacttctacactgctggt 15399


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,150,000
Number of Sequences: 3902068
Number of extensions: 3150000
Number of successful extensions: 66186
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65848
Number of HSP's gapped (non-prelim): 339
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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