ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6b21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184768.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.13
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
4gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B... 46 0.13
5emb|CR293515.12| Zebrafish DNA sequence from clone CH211-106H4 i... 44 0.51
6ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
7gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genom... 42 2.0
8gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genom... 42 2.0
9gb|AY997529.2| Musa x paradisiaca chitinase (Chi-1) mRNA, comple... 42 2.0
10gb|AC164883.5| Mus musculus BAC clone RP23-88A20 from chromosome... 40 8.0
11ref|XM_548148.2| PREDICTED: Canis familiaris similar to LBP-9 (L... 40 8.0
12gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 8.0
13dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 8.0

>ref|NM_184768.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 503 cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562
           ||||||||| ||||| || |||||||  |||||| ||  ||||||||||||  |||||||
Sbjct: 630 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 689

              
Query: 563 ccc 565
           |||
Sbjct: 690 ccc 692



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 503      cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562
                ||||||||| ||||| || |||||||  |||||| ||  ||||||||||||  |||||||
Sbjct: 20365002 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 20365061

                   
Query: 563      ccc 565
                |||
Sbjct: 20365062 ccc 20365064



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 153      ggcatgcacggccgccgcgag 173
                |||||||||||||||||||||
Sbjct: 17203169 ggcatgcacggccgccgcgag 17203149



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 503      cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562
                ||||||||| ||||| || |||||||  |||||| ||  ||||||||||||  |||||||
Sbjct: 20358031 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 20358090

                   
Query: 563      ccc 565
                |||
Sbjct: 20358091 ccc 20358093



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 153      ggcatgcacggccgccgcgag 173
                |||||||||||||||||||||
Sbjct: 17196738 ggcatgcacggccgccgcgag 17196718



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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence,
            complete sequence
          Length = 152883

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 503  cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562
            ||||||||| ||||| || |||||||  |||||| ||  ||||||||||||  |||||||
Sbjct: 9302 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 9361

               
Query: 563  ccc 565
            |||
Sbjct: 9362 ccc 9364



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>emb|CR293515.12| Zebrafish DNA sequence from clone CH211-106H4 in linkage group 2,
              complete sequence
          Length = 192891

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 322    tcaccttcaccagggatcatgc 343
              ||||||||||||||||||||||
Sbjct: 190367 tcaccttcaccagggatcatgc 190388



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>ref|XM_468715.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 ggcatgcacggccgccgcgag 173
           |||||||||||||||||||||
Sbjct: 63  ggcatgcacggccgccgcgag 43



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>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete
             sequence
          Length = 115326

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   ggcatgcacggccgccgcgag 173
             |||||||||||||||||||||
Sbjct: 35913 ggcatgcacggccgccgcgag 35893



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>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
             sequence
          Length = 153247

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   ggcatgcacggccgccgcgag 173
             |||||||||||||||||||||
Sbjct: 94562 ggcatgcacggccgccgcgag 94542



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>gb|AY997529.2| Musa x paradisiaca chitinase (Chi-1) mRNA, complete cds
          Length = 1082

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 ggcatgcacggccgccgcgag 173
           |||||||||||||||||||||
Sbjct: 106 ggcatgcacggccgccgcgag 86



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>gb|AC164883.5| Mus musculus BAC clone RP23-88A20 from chromosome 15, complete sequence
          Length = 260402

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tgatcaccttcaccagggat 338
             ||||||||||||||||||||
Sbjct: 49245 tgatcaccttcaccagggat 49264



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>ref|XM_548148.2| PREDICTED: Canis familiaris similar to LBP-9 (LOC491028), mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 269  cctggtgcaagaggtggtggatct 292
            ||||||| ||||||||||||||||
Sbjct: 1414 cctggtggaagaggtggtggatct 1391



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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 505    acatgcccaagcttaaatacctga 528
              |||||||||||||| |||||||||
Sbjct: 140875 acatgcccaagcttcaatacctga 140852



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 305     accagctaagggcatgatca 324
               ||||||||||||||||||||
Sbjct: 2919088 accagctaagggcatgatca 2919069


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,464,997
Number of Sequences: 3902068
Number of extensions: 3464997
Number of successful extensions: 54521
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54427
Number of HSP's gapped (non-prelim): 94
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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