| Clone Name | bags6b21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184768.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Plus Query: 503 cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562 ||||||||| ||||| || ||||||| |||||| || |||||||||||| ||||||| Sbjct: 630 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 689 Query: 563 ccc 565 ||| Sbjct: 690 ccc 692
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Plus Query: 503 cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562 ||||||||| ||||| || ||||||| |||||| || |||||||||||| ||||||| Sbjct: 20365002 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 20365061 Query: 563 ccc 565 ||| Sbjct: 20365062 ccc 20365064 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ggcatgcacggccgccgcgag 173 ||||||||||||||||||||| Sbjct: 17203169 ggcatgcacggccgccgcgag 17203149
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Plus Query: 503 cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562 ||||||||| ||||| || ||||||| |||||| || |||||||||||| ||||||| Sbjct: 20358031 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 20358090 Query: 563 ccc 565 ||| Sbjct: 20358091 ccc 20358093 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ggcatgcacggccgccgcgag 173 ||||||||||||||||||||| Sbjct: 17196738 ggcatgcacggccgccgcgag 17196718
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Plus Query: 503 cgacatgcccaagcttaaatacctgagaatggtgctgtcggagaccttccggatgcatcc 562 ||||||||| ||||| || ||||||| |||||| || |||||||||||| ||||||| Sbjct: 9302 cgacatgccaaagctaaagtacctgaagatggtggtgaaggagaccttccgcttgcatcc 9361 Query: 563 ccc 565 ||| Sbjct: 9362 ccc 9364
>emb|CR293515.12| Zebrafish DNA sequence from clone CH211-106H4 in linkage group 2, complete sequence Length = 192891 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 tcaccttcaccagggatcatgc 343 |||||||||||||||||||||| Sbjct: 190367 tcaccttcaccagggatcatgc 190388
>ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA Length = 981 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ggcatgcacggccgccgcgag 173 ||||||||||||||||||||| Sbjct: 63 ggcatgcacggccgccgcgag 43
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ggcatgcacggccgccgcgag 173 ||||||||||||||||||||| Sbjct: 35913 ggcatgcacggccgccgcgag 35893
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ggcatgcacggccgccgcgag 173 ||||||||||||||||||||| Sbjct: 94562 ggcatgcacggccgccgcgag 94542
>gb|AY997529.2| Musa x paradisiaca chitinase (Chi-1) mRNA, complete cds Length = 1082 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ggcatgcacggccgccgcgag 173 ||||||||||||||||||||| Sbjct: 106 ggcatgcacggccgccgcgag 86
>gb|AC164883.5| Mus musculus BAC clone RP23-88A20 from chromosome 15, complete sequence Length = 260402 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgatcaccttcaccagggat 338 |||||||||||||||||||| Sbjct: 49245 tgatcaccttcaccagggat 49264
>ref|XM_548148.2| PREDICTED: Canis familiaris similar to LBP-9 (LOC491028), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 cctggtgcaagaggtggtggatct 292 ||||||| |||||||||||||||| Sbjct: 1414 cctggtggaagaggtggtggatct 1391
>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence Length = 149462 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 acatgcccaagcttaaatacctga 528 |||||||||||||| ||||||||| Sbjct: 140875 acatgcccaagcttcaatacctga 140852
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 accagctaagggcatgatca 324 |||||||||||||||||||| Sbjct: 2919088 accagctaagggcatgatca 2919069 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,464,997 Number of Sequences: 3902068 Number of extensions: 3464997 Number of successful extensions: 54521 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54427 Number of HSP's gapped (non-prelim): 94 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)