ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6b14 |
|---|---|
| Clone Library Name | barley_pub |
>CYPR4_CYNCA (P40781) Protein CYPRO4| Length = 501 Score = 256 bits (653), Expect(2) = 1e-84 Identities = 123/145 (84%), Positives = 133/145 (91%) Frame = +2 Query: 131 MDASESTFLGLDDNRLCRWDMRDRHGIVQNLASSMESPVLEWTQGHQFSRGTNFQCFAST 310 +D SESTFLGLDDNRL +WDMRDR G+VQN+A S +SPVL WTQGHQFSRGTNFQ FA+T Sbjct: 232 LDPSESTFLGLDDNRLSQWDMRDRRGMVQNIAHS-DSPVLHWTQGHQFSRGTNFQSFATT 290 Query: 311 GDGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC 490 GDGSIVVGSLDGKIRLYS +SMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC Sbjct: 291 GDGSIVVGSLDGKIRLYSTTSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC 350 Query: 491 TIFIDKDGKEKTGFGGRMGNRIAAP 565 ++F DKDGK KTGF GRMGN+I AP Sbjct: 351 SLFTDKDGKTKTGFSGRMGNKIPAP 375 Score = 77.0 bits (188), Expect(2) = 1e-84 Identities = 33/43 (76%), Positives = 40/43 (93%) Frame = +1 Query: 1 KPHAKGVHQLDIETGKVVSQWKFGKDGTDINMRDITNDSKGAQ 129 KPH+ GV+QLDIETGK+V++WKF KDGTDI MRDITND+KG+Q Sbjct: 189 KPHSTGVNQLDIETGKIVTEWKFEKDGTDITMRDITNDTKGSQ 231
>VID27_YEAST (P40157) Vacuolar import and degradation protein VID27| Length = 782 Score = 58.5 bits (140), Expect = 1e-08 Identities = 33/83 (39%), Positives = 45/83 (54%) Frame = +2 Query: 287 NFQCFASTGDGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTT 466 NF +T G I +GS G I+LY + +R AKTA P LG I + + DGKW+L T Sbjct: 567 NFSSIGTTESGYIAIGSEKGDIKLYDRLGIR-AKTAIPSLGQAIKFITTSADGKWLLATC 625 Query: 467 DTYLILICTIFIDKDGKEKTGFG 535 ++ L+L+ KDGK G Sbjct: 626 ESTLLLMDLKI--KDGKNAGNIG 646
>WDR1_XENLA (Q9W7F2) WD-repeat protein 1 (Actin-interacting protein 1) (XAIP1)| Length = 608 Score = 35.8 bits (81), Expect = 0.087 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Frame = +2 Query: 311 GDGSIVVGSLDGKIRLYS--KSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLIL 484 G G++ VG DGK+ LYS +S++ P G+ +T + ++DG + L TD ++ Sbjct: 456 GSGTVAVGGADGKVHLYSIQGNSLKDEGKTLPAKGA-VTDLAYSHDGAF-LAVTDANKVV 513 Query: 485 ICTIFIDKDG-KEKTGFGG 538 T+F DG EK + G Sbjct: 514 --TVFSVADGYSEKNSYYG 530
>MORG1_MOUSE (Q9DAJ4) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 315 Score = 35.4 bits (80), Expect = 0.11 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +2 Query: 314 DGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGK-WILGTTDTYLILIC 490 D I+ GS+DG++R Y +RM + + +GSPIT + DG+ ++ + D+ L L Sbjct: 163 DHEILAGSVDGRVRRYD---LRMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRL-- 217 Query: 491 TIFIDKDGKEKTG 529 +DKD E G Sbjct: 218 ---LDKDTGELLG 227
>MORG1_XENTR (Q5XGI5) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 314 Score = 34.7 bits (78), Expect = 0.19 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 314 DGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTT-DTYLILIC 490 D I+ GS+DG +R Y +R + LGSPIT V + D + +L ++ D+ L L Sbjct: 163 DHEILAGSVDGNLRRYD---LRKGEMCADYLGSPITCVSFSQDSQCLLASSLDSTLRL-- 217 Query: 491 TIFIDKDGKEKTG 529 +DKD E G Sbjct: 218 ---LDKDTGELLG 227
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 34.3 bits (77), Expect = 0.25 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +2 Query: 296 CFASTGDGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGT 463 CF G + GS DG +R++ ++ KT PITHV + +GK+IL + Sbjct: 239 CFNRDG-AYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILAS 293
>MORG1_XENLA (Q3KQ62) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 314 Score = 33.1 bits (74), Expect = 0.56 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +2 Query: 323 IVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTT-DTYLILICTIF 499 I+ GS+DG +R Y +R + LGSPIT V + D + +L ++ D+ L L Sbjct: 166 ILAGSVDGNLRRYD---LRKGEMCADYLGSPITCVSFSQDSQCLLASSLDSTLRL----- 217 Query: 500 IDKDGKEKTG 529 +DKD E G Sbjct: 218 LDKDTGELLG 227
>MORG1_BRARE (Q6DH44) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 315 Score = 32.7 bits (73), Expect = 0.73 Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = +2 Query: 323 IVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTT 466 ++ GS+DG++R Y +RM + +GSPIT V + DG+ L ++ Sbjct: 166 LLTGSVDGRVRRYD---LRMGQLQVDYIGSPITCVCFSRDGQCTLSSS 210
>WDR1_CHICK (O93277) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)| Length = 609 Score = 32.7 bits (73), Expect = 0.73 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +2 Query: 311 GDGSIVVGSLDGKIRLYS--KSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLIL 484 G GS+ VG DG +RLYS +S++ G P+T + ++DG + L D ++ Sbjct: 458 GGGSVAVGGTDGNVRLYSIQGTSLKSDDKTLEAKG-PVTDLAYSHDGAF-LAVCDANKVV 515 Query: 485 ICTIFIDKDG 514 T+F DG Sbjct: 516 --TVFSVPDG 523
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = -3 Query: 442 IVRHVHMSNRRTQPWEGRLRHPHRAL*VQTNFPVQRAYHDGPITS*CKALEVCSPGELMP 263 I R+ H+ T PW+ R+PH+AL N P + +G + C +L C+ G Sbjct: 469 IHRNTHLCFVNTVPWDQLFRNPHQALLHSGNRPEEACGLEGLV---CNSL--CARGHCWG 523 Query: 262 LGPFQ 248 GP Q Sbjct: 524 PGPTQ 528
>NUDF_EMENI (Q00664) Nuclear migration protein nudF| Length = 444 Score = 32.0 bits (71), Expect = 1.3 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +2 Query: 299 FASTGDGSIVVGSLDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWIL 457 F ++ D ++ S DG +R++ S+ K S I V ++DGKW++ Sbjct: 209 FLTSNDNHLISASRDGTLRIWDVSTGFCVKVIKSATESWIRDVSPSFDGKWLV 261
>CDON_XENLA (Q90Z04) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1249 Score = 31.2 bits (69), Expect = 2.1 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 12/77 (15%) Frame = +2 Query: 290 FQCFASTGDGSIVVGSLDGKIRLYS--------KSSMRMAKTAFPGL----GSPITHVDV 433 +QC AST G+I+ S+ + + + +AF G +P HV Sbjct: 96 YQCIASTSVGAILSKSVSVSVAYLNDFETTTGHSVTAEEGSSAFIGCKIPESNPKAHVRY 155 Query: 434 TYDGKWILGTTDTYLIL 484 GKW+ ++D YLIL Sbjct: 156 KVRGKWLKESSDKYLIL 172
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 30.0 bits (66), Expect = 4.8 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -3 Query: 448 LPIVRH-VHMSNRRTQPWEGRLRHPHRAL*VQTNFPVQRAYHDGPITS*CKALEVCSPGE 272 L ++ H H+ T PW+ R+PH+AL N P +G ++C+ G Sbjct: 465 LALIHHNTHLCFVHTVPWDQLFRNPHQALLHTANRPEDECVGEG-----LACHQLCARGH 519 Query: 271 LMPLGPFQ 248 GP Q Sbjct: 520 CWGPGPTQ 527
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = -3 Query: 442 IVRHVHMSNRRTQPWEGRLRHPHRAL*VQTNFPVQRAYHDGPITS*CKALEVCSPGELMP 263 I R+ H+ T PW+ R+PH+AL N P + D ++S +C+ G Sbjct: 469 IHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEE----DLCVSSGLVCNSLCAHGHCWG 524 Query: 262 LGPFQ 248 GP Q Sbjct: 525 PGPTQ 529
>Y1881_COREF (Q8FPA4) UPF0090 protein CE1881| Length = 182 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 295 LEVCSPGELMPLGPFQHWRLHRTSQV 218 LEV +PG MPL +HWR +RT V Sbjct: 81 LEVSTPGVDMPLTQPRHWRRNRTRLV 106
>LIRA4_HUMAN (P59901) Leukocyte immunoglobulin-like receptor subfamily A member| 4 precursor (Immunoglobulin-like transcript 7) (ILT-7) (CD85g antigen) Length = 499 Score = 29.3 bits (64), Expect = 8.1 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +1 Query: 115 SKGAQXGCFGIH-IPGTR*QPTVPVGYEGSTWDCAELG*FDGVASVGMDPGASVLQGNKL 291 S G Q C+G H + P+ P+ D G S+ + PG +V G K+ Sbjct: 288 SYGGQYRCYGAHNVSSEWSAPSDPL-------DILIAGQISDRPSLSVQPGPTVTSGEKV 340 Query: 292 PVLCINW 312 +LC +W Sbjct: 341 TLLCQSW 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,868,221 Number of Sequences: 219361 Number of extensions: 2286854 Number of successful extensions: 5949 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5941 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
