>HXD3A_BRARE (O42370) Homeobox protein Hox-D3a (Hox-D3) (Fragment)|
          Length = 167

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 237 WFKNMGSRFPSHQLSSGLYVSGRPEQPKEKAPTFGSNVMPYTG 365
           WF+N   ++   Q S G+  S     P    P  GSN + Y+G
Sbjct: 20  WFQNRRMKYKKDQKSKGIMHSPLGHSPDRSPPLSGSNHIGYSG 62

>ATCU_RHILV (Q9X5V3) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 841

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 382 DFLVSPPVYGITLDPKVGAFSLGCSGR 302
           D +V  P+ G+T+DP+ G  SLG  GR
Sbjct: 31  DAIVRDPICGMTVDPQAGKPSLGHGGR 57

>ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing protein 9|
          Length = 473

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = +3

Query: 291 YVSGRPEQPKEKAPTFGSNVMP---------YTGGDTKKSGELGKMFELHAERSRKSGPL 443
           Y+   P +PKE+    GS   P         ++GGDT+ +GELG  F L +     SG  
Sbjct: 284 YIKQEPFEPKEEIS--GSGTQPGGAKEETKVFSGGDTEGNGELG--FLLPSGPGPTSG-- 337

Query: 444 GNAPSRNP 467
           G  PS  P
Sbjct: 338 GGGPSWKP 345

>EPL1_KLULA (Q6CIN8) Enhancer of polycomb-like protein 1|
          Length = 806

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 270 HQLSSGLYVSGRPEQPKEKAPTFGSN 347
           H+  SGLY   +  +PK+K P  GSN
Sbjct: 422 HKEDSGLYADEKGSEPKKKGPKTGSN 447

>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)|
          Length = 3038

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 14   SPICSISSLPPHSVGAAAQPKP 79
            SP  S++SL PH +GA + P P
Sbjct: 1686 SPPASVASLQPHMIGAQSSPGP 1707

>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 249 MGSRFPSHQLSSGLYVSGRPE--QPKEKAPTFGSNVMPYTGGDTKKSGELGKMFELHAER 422
           +G  +PSH+   G ++  RPE   P E++  FG    P     ++K  ++ K  EL+   
Sbjct: 435 LGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTP-----SQKQEKIDK--ELYPLA 487

Query: 423 SRKSGPLGNAPS 458
           S KS   GN PS
Sbjct: 488 SLKS-LFGNDPS 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,768,143
Number of Sequences: 219361
Number of extensions: 1362227
Number of successful extensions: 3983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3973
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)