>PCYOX_ARATH (P57681) Probable prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 500

 Score =  206 bits (525), Expect = 2e-53
 Identities = 98/154 (63%), Positives = 123/154 (79%)
 Frame = +1

Query: 4   GLWSIKGGNWQLAAGLLKTSNTTLHLQEGIESISDAGDYYVLKSNKGHEYNCTVTVVATP 183
           GLWS++GGNWQ+AA L+  S+ TLHL E IESIS   ++Y LKS KG+ Y C VTVVATP
Sbjct: 264 GLWSVEGGNWQMAAKLINHSDVTLHLNEKIESISYLENHYELKSTKGNSYKCDVTVVATP 323

Query: 184 LDEVNITFVPPISIPPRKMQHTHTTFVRGLLDPKFFGLSSASDIPELIGTMELPNIPFSC 363
           LDEV+I F P ISIP R++QHTHTTFVRGLL+P +FG+ S SD+P L+GT+E P IPFSC
Sbjct: 324 LDEVDIQFSPTISIPKRELQHTHTTFVRGLLNPGYFGMKSLSDVPALVGTLEDPLIPFSC 383

Query: 364 ISVRKKHSEHDMTYKIFSRAKLEDALLDQIFSTR 465
           IS+ +K+S+ DMTYKIF+R    D+LLD++FS R
Sbjct: 384 ISILRKYSKTDMTYKIFTRQPASDSLLDELFSRR 417

>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 34/186 (18%)
 Frame = +1

Query: 1   AGLWSIKGGNWQLAAGLLKTSNTTLHLQEGIESISDAGDYYVLKSNKGHEYNCT------ 162
           +GLW+++GGN  + +GLL+ S + L        IS +  Y   K+   H  N T      
Sbjct: 245 SGLWAVEGGNKLVCSGLLQASKSNL--------ISGSVMYIEEKTKTKHTGNPTKMYEVV 296

Query: 163 -------------VTVVATPLDE--VNITFV---PPISIPPRKMQHTHTTFVRGLLDPKF 288
                        + +VATPL+    NITF+   PPI    +  QH  TT V+G L+   
Sbjct: 297 YQIGTETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSI 356

Query: 289 FGLSSASDIP-ELIGTMELPNIPFSCI----SVRKKHSEHDMT-----YKIFSRAKLEDA 438
           F            + T +  ++  + I    SVR+K      T     +KIFS+  L  A
Sbjct: 357 FSSRPIDKFGLNTVLTTDNSDLFINSIGIVSSVREKEDPEPSTDGTYVWKIFSQETLTKA 416

Query: 439 LLDQIF 456
            + ++F
Sbjct: 417 QILKLF 422

>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 40/192 (20%)
 Frame = +1

Query: 1   AGLWSIKGGNWQLAAGLLKTSNTTLHLQEGIESISDAGDYYVLKSNKGHEYNCT------ 162
           +GLW+++GGN  + +GLL+ S + L        IS +  Y   K+   H  N T      
Sbjct: 245 SGLWAVEGGNKLVCSGLLQASKSNL--------ISGSVMYIEEKTKTKHTGNPTKMYEVV 296

Query: 163 -------------VTVVATPLDE--VNITFV---PPISIPPRKMQHTHTTFVRGLLDPKF 288
                        + +VATPL+    NITF+   PPI    +  QH  TT V+G L+   
Sbjct: 297 YQIGTETHSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSI 356

Query: 289 --------FGLSS--ASDIPEL-IGTMELPNIPFSCISVRKKHSEHDMT-----YKIFSR 420
                   FGLS+   +D  +L I ++ + +      SVR+K      T     +KIFS+
Sbjct: 357 FSSRPIDKFGLSTVLTTDNSDLFINSIGIVS------SVREKEDPEPSTDGTYVWKIFSQ 410

Query: 421 AKLEDALLDQIF 456
             L  A + ++F
Sbjct: 411 ETLTKAQILKLF 422

>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
 Frame = +1

Query: 1   AGLWSIKGGNWQLAAGLLKTSNTTL------HLQEGIES--ISDAGDYYVLKSNKGHEYN 156
           +GLW+++GGN  + +GLL+ S + L      +++E  ++    +    Y +    G E  
Sbjct: 245 SGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIGTETR 304

Query: 157 C---TVTVVATPLDE--VNITFV---PPISIPPRKMQHTHTTFVRGLLDPKFFGLSSASD 312
                + +VATPL+    NITF+   PPI    +   H  TT V+G L+   F       
Sbjct: 305 SDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYVHIVTTLVKGELNTSIFSSRPIDK 364

Query: 313 IP-ELIGTMELPNIPFSCI----SVRKKHSEHDMT-----YKIFSRAKLEDALLDQIF 456
                + T +  ++  + I    SVR+K      T     +KIFS+  L  A + ++F
Sbjct: 365 FGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLF 422

>GLRK_LYMST (P26591) Glutamate receptor precursor|
          Length = 917

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +1

Query: 277 DPKFFGLSSASDIPELIGTMELPNIPFSCISVRKKHSEHDMTYKIFSRAKLEDALLDQIF 456
           D   FG+S+AS +  +    +  N+PF  IS+ + +S H+ +Y+I+ R    +AL+D I 
Sbjct: 87  DLAIFGVSNASSLATIQSYTDTFNVPFVTISMAQNNS-HNGSYQIYMRPMYINALVDVIV 145

Query: 457 STR 465
             R
Sbjct: 146 HYR 148

>PCYOX_MOUSE (Q9CQF9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
 Frame = +1

Query: 1   AGLWSIKGGNWQLAAGLLKTSNTTLHLQEGIESISD------AGD----YYVL--KSNKG 144
           + LW+++GGN  + +GLL+ S++ L +   + SI +       G+    Y V+    ++ 
Sbjct: 245 SNLWAVEGGNKIVCSGLLQASSSNL-ISGSVMSIEEKTRTKQTGNPTKMYEVVYKTGSET 303

Query: 145 HEYNCTVTVVATPLDE--VNIT---FVPPISIPPRKMQHTHTTFVRGLLDPKFF 291
           H     + +VA PL+    NIT   F PPI       Q   TTF++G L+   F
Sbjct: 304 HSDFYDIVLVAAPLNRKMSNITFRNFDPPIEEFNDPYQQLVTTFIKGELNSTLF 357

>PCYOX_RAT (Q99ML5) Prenylcysteine oxidase precursor (EC 1.8.3.5) (Chloride|
           ion pump-associated 55 kDa protein)
          Length = 504

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
 Frame = +1

Query: 1   AGLWSIKGGNWQLAAGLLKTSNTTLHLQEGIESISDA--------GDYYVLKSNKGHEYN 156
           + LW+++GGN  + +GLL+ SN+ L +   + SI              Y +    G E +
Sbjct: 245 SNLWAVEGGNKVVCSGLLQASNSNL-ISGSVMSIEKTRTKQTGTPPKMYEVVYKTGSEIH 303

Query: 157 C---TVTVVATPLDE--VNIT---FVPPISIPPRKMQHTHTTFVRGLLDPKFF 291
                + +VA PL+    NIT   F PPI       Q   TT ++G L+   F
Sbjct: 304 SDFYDIVLVAAPLNRKMSNITFRNFDPPIEEFNDPYQQLVTTLIKGELNSTLF 356

>NFASC_CHICK (O42414) Neurofascin precursor|
          Length = 1369

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 7   LWSIKGGNWQLAAGLLKTSNTTLHLQEGIESISDAGDYYVLKSNK--GHEYNCTVTVVAT 180
           +W  KGG  +L AG  K  N    L+    S  D+G+Y+ L SNK     +  +V V A 
Sbjct: 297 MWYKKGG--ELPAGKTKLENFNKALRISNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA 354

Query: 181 P--LDEVNITFVPP 216
           P  LDE     + P
Sbjct: 355 PYWLDEPQNLILAP 368

>LPAT_MAIZE (Q41745) 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 (EC|
           2.3.1.51) (Phospholipid synthesis protein 1)
          Length = 374

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 326 ISSGMSDAELRPKNLGSKRPLTKVVWVCCIFLGGMEIGGTNVMFTSSRGVATT 168
           +++G  D E+RP     K  L  + W C +  G +E      + ++ RGVA T
Sbjct: 286 LATGTFDEEIRPIGRPVKSLLVTLFWSCLLLFGAIEFFKWTQLLSTWRGVAFT 338

>DNAA_DESPS (Q6ARL8) Chromosomal replication initiator protein dnaA|
          Length = 479

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
 Frame = +1

Query: 31  WQLAAGLLKTSNT------------TLHLQEGIESISDAGDYYV--LKSNKGHEYNCTVT 168
           WQ A G LK S +            ++  + G+ S++    Y++  +K N   E   ++T
Sbjct: 9   WQKAQGCLKESLSKDVYSLWIAPLESVRQENGVVSLAGPDRYFIAFVKQNYLKEIERSLT 68

Query: 169 VVATPLDEVNITFVPPISIPP-RKMQHTHTTFVRGLLDPKFFGLS---------SASDIP 318
            V + + +V   F+   ++P  R M H  +T       P     S         SAS +P
Sbjct: 69  GVDSSITDVR--FLEKKAVPQLRSMMHRTSTSAPTFPVPSVSSASTASTASTASSASSVP 126

Query: 319 ELIGTMELPNIPFSCISVRKKHSEH 393
                + LP++P +  S+R  H  +
Sbjct: 127 R---QLRLPSVPKNNASIRALHPRY 148

>S4A4_PIG (Q4U116) Electrogenic sodium bicarbonate cotransporter 1 (Sodium|
           bicarbonate cotransporter) (Na(+)/HCO3(-) cotransporter)
           (Solute carrier family 4 member 4)
          Length = 1079

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 73  LHLQEGIESISDAGDYYVLKSNKGHEYNCTVTVVATPLDEVNITFVPPISIPPRKMQ 243
           + + +  + +    DYY + SN    YN   + V  P + VNI+     ++ P  +Q
Sbjct: 595 IFIYDAFKKMIKLADYYPINSNFKVGYNTQFSCVCVPPNPVNISVSNDTTLAPEDLQ 651

>GLYA_MYCS5 (Q4A6A3) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 421

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 79  LQEGIESISDAGDYYVLKSNKGHEYNCTVTVVATPLDEVNITF----VPPISIPP 231
           +++G+E +S   D ++L  N    YN T       L+++NIT     +P   +PP
Sbjct: 298 IKKGVEVVSGGTDNHLLLINVKSSYNITGKEAENFLEKINITINKNSIPFDELPP 352

>S4A4_BOVIN (Q9GL77) Electrogenic sodium bicarbonate cotransporter 1 (Sodium|
           bicarbonate cotransporter) (Solute carrier family 4
           member 4)
          Length = 1079

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 73  LHLQEGIESISDAGDYYVLKSNKGHEYNCTVTVVATPLDEVNITFVPPISIPPRKM 240
           + + +  + +    DYY + SN    YN   + V  P D VNI+     ++ P  +
Sbjct: 595 IFIYDAFKKMIKLADYYPINSNFKVGYNTQFSCVCMPPDPVNISVSNDTTLAPEDL 650


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,956,315
Number of Sequences: 219361
Number of extensions: 1405806
Number of successful extensions: 3743
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3739
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)