ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GHRHR_RAT (Q02644) Growth hormone-releasing hormone receptor pre... 29 3.6
2CTXA_CARAL (Q9GNN8) Toxin A precursor (CaTX-A) 29 3.6
3SYFB_ACIAD (Q6F873) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 6.1
4MPDZ_HUMAN (O75970) Multiple PDZ domain protein (Multi PDZ domai... 28 8.0
5YNM5_YEAST (P53918) Hypothetical 73.8 kDa protein in SPC98-TOM70... 28 8.0

>GHRHR_RAT (Q02644) Growth hormone-releasing hormone receptor precursor (GHRH|
           receptor) (GRF receptor) (GRFR)
          Length = 464

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 2   LLLRRINKSQGGLYPRMQLCQALVFLASSRVGMGHSCPSP 121
           +LLR++  +QGGL+ R Q C  L         +  SCP P
Sbjct: 306 ILLRKLGPAQGGLHTRAQYCNYL---------LPWSCPLP 336



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>CTXA_CARAL (Q9GNN8) Toxin A precursor (CaTX-A)|
          Length = 463

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 81  HQAGWAWGTAVQAPAKESY 137
           H  GW WGTA + P ++ Y
Sbjct: 396 HAQGWGWGTADEDPGEQGY 414



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>SYFB_ACIAD (Q6F873) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 793

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 119 PGERKLSARKLHQVEISGFACGAGTILLQ 205
           PGE K+   KL  +E  G  CGA  I L+
Sbjct: 100 PGEFKIKKGKLRGIESQGMLCGASEIDLE 128



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>MPDZ_HUMAN (O75970) Multiple PDZ domain protein (Multi PDZ domain protein 1)|
            (Multi-PDZ-domain protein 1)
          Length = 2042

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 59   CQALVFLASSRVGMGHSCPSPGERKLSARKLHQVEISGFACGAGTI 196
            C+  + ++  R G+G S     +  L A  +H+V   G AC  G +
Sbjct: 1626 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRL 1671



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>YNM5_YEAST (P53918) Hypothetical 73.8 kDa protein in SPC98-TOM70 intergenic|
           region
          Length = 673

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 1   VTTPADQQESRWFISKDAVVSGLGLLGIKQGG 96
           +  PA      WF+ K AV  G+ LLG   GG
Sbjct: 323 IFVPATTVLPGWFLKKRAVAMGVSLLGTGAGG 354


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,390,667
Number of Sequences: 219361
Number of extensions: 652621
Number of successful extensions: 1508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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