ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6b01 |
|---|---|
| Clone Library Name | barley_pub |
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 115 bits (288), Expect = 6e-26 Identities = 72/151 (47%), Positives = 83/151 (54%), Gaps = 8/151 (5%) Frame = +2 Query: 2 LVKDGFIIRXASE-------DPLQVSCKEGT*-GQAXRAVTLXMVSVGVPGXARLPTKIX 157 LVKDGFIIR ++ L ++ ++G G R T ARLPTK+ Sbjct: 44 LVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTRE---------ARLPTKVL 94 Query: 158 XXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKT 337 KYRE KKID+HMYHDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKT Sbjct: 95 WMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKT 154 Query: 338 LSDQFXXXXXXXXXXXXXXXXXXXXXLAQGP 430 LSDQF LA+GP Sbjct: 155 LSDQFEAKRAKNKASRERKHARREERLAKGP 185
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 114 bits (285), Expect = 1e-25 Identities = 70/151 (46%), Positives = 81/151 (53%), Gaps = 8/151 (5%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGX--------ARLPTKIX 157 LVKDGFIIR P ++ + R + + + G ARLPTK+ Sbjct: 44 LVKDGFIIRK----PTKIHSRS-----RARKMKIAKMKGRHSGYGKRKGTREARLPTKVL 94 Query: 158 XXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKT 337 KYRE KKIDKHMYHDMY++VKGN+FKNKRVLMESIHKSKAEKAREKT Sbjct: 95 WMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKT 154 Query: 338 LSDQFXXXXXXXXXXXXXXXXXXXXXLAQGP 430 LSDQF LA+GP Sbjct: 155 LSDQFEAKRAKNKASRERKHARREERLAKGP 185
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 112 bits (281), Expect = 4e-25 Identities = 72/151 (47%), Positives = 82/151 (54%), Gaps = 8/151 (5%) Frame = +2 Query: 2 LVKDGFIIRXASE-------DPLQVSCKEGT*-GQAXRAVTLXMVSVGVPGXARLPTKIX 157 LVKDGFIIR ++ L + ++G G R T ARLPTKI Sbjct: 44 LVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTRE---------ARLPTKIL 94 Query: 158 XXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKT 337 KYRE+KKID+HMYHDMY+KVKGN+FKNKRVLMESIHK KAEKAREKT Sbjct: 95 WMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKT 154 Query: 338 LSDQFXXXXXXXXXXXXXXXXXXXXXLAQGP 430 L+DQF LAQGP Sbjct: 155 LADQFEAKRIKNKASRERKFARREERLAQGP 185
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 95.9 bits (237), Expect = 5e-20 Identities = 52/116 (44%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 LVKDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LVKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKLSWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/116 (43%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 L+KDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LIKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/116 (43%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 L+KDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LIKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/116 (43%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 L+KDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LIKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/116 (43%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 L+KDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LIKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/116 (43%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 L+KDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LIKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/116 (43%), Positives = 70/116 (60%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 L+KDG IIR + C++ T + + + + AR+P K+ Sbjct: 44 LIKDGLIIRKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 92.4 bits (228), Expect = 6e-19 Identities = 50/116 (43%), Positives = 69/116 (59%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 LVKDG II+ + C++ T + + + + AR+P K+ Sbjct: 44 LVKDGLIIKKPVTVHSRARCRKNTLARR-KGRHMGVGKRKGTANARMPEKLCWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YREAKKID+HMYH +YL+ KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 91.3 bits (225), Expect = 1e-18 Identities = 49/116 (42%), Positives = 69/116 (59%) Frame = +2 Query: 2 LVKDGFIIRXASEDPLQVSCKEGT*GQAXRAVTLXMVSVGVPGXARLPTKIXXXXXXXXX 181 LVKDG II+ + C++ T + + + + AR+P K+ Sbjct: 44 LVKDGLIIKKPVTVHSRARCRKNTLARR-KGRHMGIGKRKGTANARMPEKLCWMRRMRIL 102 Query: 182 XXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 349 +YRE+KKID+HMYH +YL+ KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 90.9 bits (224), Expect = 2e-18 Identities = 42/72 (58%), Positives = 52/72 (72%) Frame = +2 Query: 134 ARLPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 313 AR+PTK+ KYR++KKID+H+YHD+Y+K KGN+FKNKRVLME IHK K Sbjct: 87 ARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKK 146 Query: 314 AEKAREKTLSDQ 349 AEK R K L+DQ Sbjct: 147 AEKQRSKMLADQ 158
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 83.2 bits (204), Expect = 4e-16 Identities = 42/72 (58%), Positives = 48/72 (66%) Frame = +2 Query: 134 ARLPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 313 ARLP+KI KYREAKKIDKH Y ++YLK KGN+FKNKR L+E I KSK Sbjct: 87 ARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSK 146 Query: 314 AEKAREKTLSDQ 349 EK REK + DQ Sbjct: 147 TEKLREKLIQDQ 158
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 72.4 bits (176), Expect = 6e-13 Identities = 34/72 (47%), Positives = 45/72 (62%) Frame = +2 Query: 134 ARLPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 313 AR+P K +YR+AKK+DKH+YH++YL+ KGN FKNK+ L+E I K K Sbjct: 87 ARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKK 146 Query: 314 AEKAREKTLSDQ 349 E R K L+DQ Sbjct: 147 TENKRAKQLADQ 158
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 68.9 bits (167), Expect = 7e-12 Identities = 32/72 (44%), Positives = 45/72 (62%) Frame = +2 Query: 134 ARLPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 313 AR+P+ + KYRE+ KIDKH+YH +YL+ KGN FK+KR L+E I ++K Sbjct: 86 ARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAK 145 Query: 314 AEKAREKTLSDQ 349 AE R K + +Q Sbjct: 146 AEANRTKLIQEQ 157
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 67.4 bits (163), Expect = 2e-11 Identities = 32/72 (44%), Positives = 47/72 (65%) Frame = +2 Query: 134 ARLPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 313 ARLP+++ KYR+A KIDKH+YH +Y + KGN FK+KR L+E I ++K Sbjct: 86 ARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAK 145 Query: 314 AEKAREKTLSDQ 349 A+ REK L+++ Sbjct: 146 ADAQREKALNEE 157
>RL19_PYRHO (O59437) 50S ribosomal protein L19e| Length = 150 Score = 36.2 bits (82), Expect = 0.049 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +2 Query: 197 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 289 K +E KKID+ Y +Y++ KG FKNK L Sbjct: 108 KLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_PYRAB (Q9V1V3) 50S ribosomal protein L19e| Length = 151 Score = 35.4 bits (80), Expect = 0.084 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +2 Query: 197 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAR 328 K +E KKID+ Y +Y++ KG FK+K L + + K R Sbjct: 108 KLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151
>RL19_PYRFU (Q8U016) 50S ribosomal protein L19e (PfeL19)| Length = 150 Score = 33.9 bits (76), Expect = 0.24 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 197 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 289 K + KKID+ Y +Y++ KG FKNK L Sbjct: 108 KLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_SULAC (O05639) 50S ribosomal protein L19e| Length = 150 Score = 32.0 bits (71), Expect = 0.93 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 203 REAKKIDKHMYHDMYLKVKGNMFKN----KRVLMESIHK 307 R+ IDKH Y +Y + KGN FKN K L + HK Sbjct: 111 RDNNVIDKHTYRLLYKRAKGNYFKNLSDVKSYLRQMGHK 149
>RL19_SULSO (Q9UX89) 50S ribosomal protein L19e| Length = 151 Score = 32.0 bits (71), Expect = 0.93 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +2 Query: 203 REAKKIDKHMYHDMYLKVKGNMFK 274 R+ K ID+H Y ++YLK KG +K Sbjct: 111 RDHKVIDRHTYRELYLKTKGGNYK 134
>NU1M_RAT (P03889) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = -2 Query: 330 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFA 208 +L S LWI + + LL+ N LPLT + WY+ L IF A Sbjct: 263 TLLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFLA 312
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = -2 Query: 330 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 205 +L ++L LWI + + LL+ N LPLT + WY+ LS AS Sbjct: 263 TLLLTSLFLWIRTTYPRFRYDQLMYLLWKNFLPLTLTLLMWYISLSTMIAS 313
>YQN3_CAEEL (Q09524) Probable tRNA pseudouridine synthase E02H1.3 (EC 5.4.99.-)| (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 402 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = -1 Query: 154 DLGGEPSLPWYPYAYHXQSDGPXCLASCALLARDLEW 44 DL PS P Y A SD P CL C + D+EW Sbjct: 274 DLKKYPSRPQYTLA----SDTPLCLFDCGYKSEDVEW 306
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +3 Query: 366 PRARQAGRGRLPGGRRDWPRAP 431 PR R+ RGR G RRDW RAP Sbjct: 59 PRRRRGNRGR--GQRRDWSRAP 78
>RR3_MESVI (Q9MUU2) Chloroplast 30S ribosomal protein S3| Length = 213 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 11/47 (23%) Frame = +3 Query: 318 RRQERRPYLTSLRPSVPRARQAG--------RGRLPG---GRRDWPR 425 R QER+P+ ++R +V RA++AG GRL G R +W R Sbjct: 125 RLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVR 171
>NU1M_HALGR (P38598) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = -2 Query: 336 VFSLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 205 V +LA + L LWI + + LL+ N LPLT W++ L I AS Sbjct: 261 VKTLALTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVTLPIISAS 313
>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +3 Query: 366 PRARQAGRGRLPGGRRDWPRAP 431 PR R+ RGR G R+DW RAP Sbjct: 59 PRRRRGNRGR--GQRKDWSRAP 78
>NXF1_COTJA (P58797) Nuclear RNA export factor 1 (Tip-associating protein)| (Tip-associated protein) (mRNA export factor TAP) Length = 616 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 321 RQERRPYLTSLRPSVPRARQAGRGRLPGGRRDW 419 R R P+LT +R +P ++G G GGRR+W Sbjct: 85 RPSRAPHLT-VRRDLPPPDRSGGGSRDGGRRNW 116
>Y505_MYCPN (P75281) Hypothetical protein MPN505 (P02_orf253)| Length = 253 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +2 Query: 209 AKKIDKHMYHDMYLKVKGNMFKNKRVLMES-IHKSKAEKAREKTLS 343 AKK DKH Y D++LK+K N K+ E + K + K K ++ Sbjct: 153 AKKGDKH-YFDLFLKIKSNSDPKKQFTTEKFLTKEEKNKVNGKEIT 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,722,141 Number of Sequences: 219361 Number of extensions: 729315 Number of successful extensions: 2268 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2258 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
