ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5l23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 159 1e-35
2gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 159 1e-35
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
4gb|AY112256.1| Zea mays CL2904_1 mRNA sequence 115 2e-22
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
8dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
9dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
10dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
11dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
12dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
13emb|BX041672.1|CNS094BG Single read from an extremity of a full-... 46 0.14
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
15dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
16ref|XM_309437.2| Anopheles gambiae str. PEST ENSANGP00000008302 ... 46 0.14
17ref|XM_564296.1| Anopheles gambiae str. PEST ENSANGP00000029487 ... 46 0.14
18dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.56
19gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.56
20ref|XM_470282.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
21gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 geno... 42 2.2
22gb|AY593775.1| Foot-and-mouth disease virus A isolate a32ven iso... 42 2.2
23gb|AY593773.1| Foot-and-mouth disease virus A isolate a29peru is... 42 2.2
24dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.2
25dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
26gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 2.2
27gb|AY365117.2| Mycobacterium vanbaalenii strain PYR-1 phenanthre... 40 8.7
28gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 8.7
29emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chr... 40 8.7
30emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome... 40 8.7
31emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 8.7
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.7
33emb|CR616618.1| full-length cDNA clone CS0DB001YF19 of Neuroblas... 40 8.7
34emb|CR613339.1| full-length cDNA clone CS0DF034YE01 of Fetal bra... 40 8.7
35emb|CR599986.1| full-length cDNA clone CS0DL002YA24 of B cells (... 40 8.7
36gb|AE012115.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 8.7
37gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 8.7
38gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 8.7
39emb|CR389393.1| Gallus gallus finished cDNA, clone ChEST185a6 40 8.7
40gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 8.7
41gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-8... 40 8.7
42gb|AC012360.7| Homo sapiens BAC clone RP11-332H14 from 2, comple... 40 8.7
43gb|AF466932.1| Zea mays clone BAC 206C17, complete sequence 40 8.7
44gb|AF525490.2| Streptomyces griseus fredericamycin biosynthetic ... 40 8.7
45dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 8.7
46dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 8.7
47gb|BC060859.1| Homo sapiens family with sequence similarity 100,... 40 8.7
48gb|BC035511.2| Homo sapiens family with sequence similarity 100,... 40 8.7
49dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 8.7
50ref|NM_182565.2| Homo sapiens family with sequence similarity 10... 40 8.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  159 bits (80), Expect = 1e-35
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                            
Query: 359      gagcgcgaggtgaaggagcgcgccgcggagaaggcggcgtccgtgtacttcgatgagaag 418
                ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 11672752 gagcgcgcggtgaaggagcgcgcggcggagaaggcggcgtcggtgtacttcgaggagaag 11672693

                                                                            
Query: 419      gaccggttggccaaggagcgggcggcggagcggctggacaaatgcgtcgagaagtgcgtg 478
                |||||| || | | |||||| |||||||||||| ||||||| ||||| ||||||||||| 
Sbjct: 11672692 gaccggctgacgagggagcgcgcggcggagcgggtggacaagtgcgtggagaagtgcgtc 11672633

                                                                
Query: 479      gaagggtgcgccggctcgtcctgcgcgcaccgcaagggcaagatgtga 526
                || |||||| ||| | |  ||||||| |||||| | ||||||||||||
Sbjct: 11672632 gaggggtgccccgacgccacctgcgcccaccgccacggcaagatgtga 11672585



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 242      ggcctgttcggggcgctgggcaacatgacgggcgcgatcaaggagaagctgacggt 297
                |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 11672848 ggcctgctcggggcgctggggaacgtgacgggggcgatcaaggagaagctgacggt 11672793



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 167      accacgcagacagccgccgacaaggcaagggagacggccggcacccacga 216
                ||||| ||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 11673012 accacccagaccgccgccgacaaggccagggagacggccgccacccacga 11672963



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 41       caggagacgagggacgccgccgccgagaaggcgaggcaggccaaggacg 89
                |||||||||||||||||| ||||||| | ||||||| ||||||||||||
Sbjct: 11673072 caggagacgagggacgccaccgccgacacggcgaggaaggccaaggacg 11673024



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 59      gccgccgagaaggcgaggcaggccaagga 87
               |||| |||||||||||||||| |||||||
Sbjct: 3660515 gccggcgagaaggcgaggcagtccaagga 3660487
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>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score =  159 bits (80), Expect = 1e-35
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                         
Query: 359   gagcgcgaggtgaaggagcgcgccgcggagaaggcggcgtccgtgtacttcgatgagaag 418
             ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 61847 gagcgcgcggtgaaggagcgcgcggcggagaaggcggcgtcggtgtacttcgaggagaag 61788

                                                                         
Query: 419   gaccggttggccaaggagcgggcggcggagcggctggacaaatgcgtcgagaagtgcgtg 478
             |||||| || | | |||||| |||||||||||| ||||||| ||||| ||||||||||| 
Sbjct: 61787 gaccggctgacgagggagcgcgcggcggagcgggtggacaagtgcgtggagaagtgcgtc 61728

                                                             
Query: 479   gaagggtgcgccggctcgtcctgcgcgcaccgcaagggcaagatgtga 526
             || |||||| ||| | |  ||||||| |||||| | ||||||||||||
Sbjct: 61727 gaggggtgccccgacgccacctgcgcccaccgccacggcaagatgtga 61680



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 242   ggcctgttcggggcgctgggcaacatgacgggcgcgatcaaggagaagctgacggt 297
             |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 61943 ggcctgctcggggcgctggggaacgtgacgggggcgatcaaggagaagctgacggt 61888



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 167   accacgcagacagccgccgacaaggcaagggagacggccggcacccacga 216
             ||||| ||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 62107 accacccagaccgccgccgacaaggccagggagacggccgccacccacga 62058



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 41    caggagacgagggacgccgccgccgagaaggcgaggcaggccaaggacg 89
             |||||||||||||||||| ||||||| | ||||||| ||||||||||||
Sbjct: 62167 caggagacgagggacgccaccgccgacacggcgaggaaggccaaggacg 62119
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  159 bits (80), Expect = 1e-35
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                            
Query: 359      gagcgcgaggtgaaggagcgcgccgcggagaaggcggcgtccgtgtacttcgatgagaag 418
                ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 11669515 gagcgcgcggtgaaggagcgcgcggcggagaaggcggcgtcggtgtacttcgaggagaag 11669456

                                                                            
Query: 419      gaccggttggccaaggagcgggcggcggagcggctggacaaatgcgtcgagaagtgcgtg 478
                |||||| || | | |||||| |||||||||||| ||||||| ||||| ||||||||||| 
Sbjct: 11669455 gaccggctgacgagggagcgcgcggcggagcgggtggacaagtgcgtggagaagtgcgtc 11669396

                                                                
Query: 479      gaagggtgcgccggctcgtcctgcgcgcaccgcaagggcaagatgtga 526
                || |||||| ||| | |  ||||||| |||||| | ||||||||||||
Sbjct: 11669395 gaggggtgccccgacgccacctgcgcccaccgccacggcaagatgtga 11669348



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 242      ggcctgttcggggcgctgggcaacatgacgggcgcgatcaaggagaagctgacggt 297
                |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 11669611 ggcctgctcggggcgctggggaacgtgacgggggcgatcaaggagaagctgacggt 11669556



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 167      accacgcagacagccgccgacaaggcaagggagacggccggcacccacga 216
                ||||| ||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 11669775 accacccagaccgccgccgacaaggccagggagacggccgccacccacga 11669726



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 41       caggagacgagggacgccgccgccgagaaggcgaggcaggccaaggacg 89
                |||||||||||||||||| ||||||| | ||||||| ||||||||||||
Sbjct: 11669835 caggagacgagggacgccaccgccgacacggcgaggaaggccaaggacg 11669787



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 59      gccgccgagaaggcgaggcaggccaagga 87
               |||| |||||||||||||||| |||||||
Sbjct: 3660626 gccggcgagaaggcgaggcagtccaagga 3660598
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>gb|AY112256.1| Zea mays CL2904_1 mRNA sequence
          Length = 595

 Score =  115 bits (58), Expect = 2e-22
 Identities = 109/126 (86%)
 Strand = Plus / Minus

                                                                       
Query: 401 gtgtacttcgatgagaaggaccggttggccaaggagcgggcggcggagcggctggacaaa 460
           ||||||||||| |||||||||||| ||    || |||| |||||||||||| ||||| | 
Sbjct: 335 gtgtacttcgaggagaaggaccggctgatgcagcagcgtgcggcggagcgggtggaccag 276

                                                                       
Query: 461 tgcgtcgagaagtgcgtggaagggtgcgccggctcgtcctgcgcgcaccgcaagggcaag 520
           |||||||||||||||||||| || ||||||||||||||||||| ||| ||| |||| |||
Sbjct: 275 tgcgtcgagaagtgcgtggagggttgcgccggctcgtcctgcgtgcatcgccaggggaag 216

                 
Query: 521 atgtga 526
           ||||||
Sbjct: 215 atgtga 210



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 267 tgacgggcgcgatcaaggagaagctgacg 295
           |||||||||||||||||||||||||||||
Sbjct: 451 tgacgggcgcgatcaaggagaagctgacg 423



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 173 cagacagccgccgacaaggcaagggagacggccggcacccacga 216
           ||||| ||||| |||||||| |||||||||||| |||| |||||
Sbjct: 542 cagaccgccgctgacaaggctagggagacggccagcactcacga 499
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 267      tgacgggcgcgatcaaggagaagctgacggt 297
                ||||||| |||||||||||||||||||||||
Sbjct: 24426064 tgacgggagcgatcaaggagaagctgacggt 24426034
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 267     tgacgggcgcgatcaaggagaagctgacggt 297
               ||||||| |||||||||||||||||||||||
Sbjct: 1988212 tgacgggagcgatcaaggagaagctgacggt 1988242
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 267      tgacgggcgcgatcaaggagaagctgacggt 297
                ||||||| |||||||||||||||||||||||
Sbjct: 38086811 tgacgggagcgatcaaggagaagctgacggt 38086781
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 267   tgacgggcgcgatcaaggagaagctgacggt 297
             ||||||| |||||||||||||||||||||||
Sbjct: 54845 tgacgggagcgatcaaggagaagctgacggt 54815
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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0018C10
          Length = 200183

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 267  tgacgggcgcgatcaaggagaagctgacggt 297
            ||||||| |||||||||||||||||||||||
Sbjct: 6045 tgacgggagcgatcaaggagaagctgacggt 6015
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 267    tgacgggcgcgatcaaggagaagctgacggt 297
              ||||||| |||||||||||||||||||||||
Sbjct: 116992 tgacgggagcgatcaaggagaagctgacggt 117022
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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0041F13
          Length = 163230

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                           
Query: 267  tgacgggcgcgatcaaggagaagctgacggt 297
            ||||||| |||||||||||||||||||||||
Sbjct: 9074 tgacgggagcgatcaaggagaagctgacggt 9104
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>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_B10
          Length = 100294

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 267   tgacgggcgcgatcaaggagaagctgacggt 297
             ||||||| |||||||||||||||||||||||
Sbjct: 51931 tgacgggagcgatcaaggagaagctgacggt 51901
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>emb|BX041672.1|CNS094BG Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC13BA09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 974

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 273 gcgcgatcaaggagaagctgacg 295
           |||||||||||||||||||||||
Sbjct: 615 gcgcgatcaaggagaagctgacg 593
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 275      gcgatcaaggagaagctgacggt 297
                |||||||||||||||||||||||
Sbjct: 28725275 gcgatcaaggagaagctgacggt 28725253
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 275   gcgatcaaggagaagctgacggt 297
             |||||||||||||||||||||||
Sbjct: 41848 gcgatcaaggagaagctgacggt 41826
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>ref|XM_309437.2| Anopheles gambiae str. PEST ENSANGP00000008302 (ENSANGG00000006265),
            partial mRNA
          Length = 2309

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 273  gcgcgatcaaggagaagctgacg 295
            |||||||||||||||||||||||
Sbjct: 1694 gcgcgatcaaggagaagctgacg 1716
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>ref|XM_564296.1| Anopheles gambiae str. PEST ENSANGP00000029487 (ENSANGG00000006265),
            partial mRNA
          Length = 2552

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 273  gcgcgatcaaggagaagctgacg 295
            |||||||||||||||||||||||
Sbjct: 1937 gcgcgatcaaggagaagctgacg 1959
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 52      ggacgccgccgccgagaaggcg 73
               ||||||||||||||||||||||
Sbjct: 4637106 ggacgccgccgccgagaaggcg 4637127
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 355    ggacgagcgcgaggtgaaggagcgcgccgcggag 388
              |||||||||||||| | ||| |||||||||||||
Sbjct: 228117 ggacgagcgcgaggcgcaggcgcgcgccgcggag 228084



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 433     ggagcgggcggcggagcggctgga 456
               |||||| |||||||||||||||||
Sbjct: 3395575 ggagcgcgcggcggagcggctgga 3395598



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     ggagcgcgccgcggagaagg 392
               ||||||||||||||||||||
Sbjct: 2137064 ggagcgcgccgcggagaagg 2137045



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 366     aggtgaaggagcgcgccgcg 385
               ||||||||||||||||||||
Sbjct: 1465282 aggtgaaggagcgcgccgcg 1465301
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>ref|XM_470282.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 59  gccgccgagaaggcgaggcaggccaagga 87
           |||| |||||||||||||||| |||||||
Sbjct: 904 gccggcgagaaggcgaggcagtccaagga 932
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>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete
              sequence
          Length = 160738

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 59     gccgccgagaaggcgaggcaggccaagga 87
              |||| |||||||||||||||| |||||||
Sbjct: 120862 gccggcgagaaggcgaggcagtccaagga 120890
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>gb|AY593775.1| Foot-and-mouth disease virus A isolate a32ven iso36, complete genome
          Length = 8211

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  accggcctgttcggggcgctg 259
            |||||||||||||||||||||
Sbjct: 1927 accggcctgttcggggcgctg 1947
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>gb|AY593773.1| Foot-and-mouth disease virus A isolate a29peru iso37, complete genome
          Length = 8202

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  accggcctgttcggggcgctg 259
            |||||||||||||||||||||
Sbjct: 1927 accggcctgttcggggcgctg 1947
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 42      aggagacgagggacgccgccgccgagaaggcgaggcaggcc 82
               |||||||| | | |||||||||||| |||||| ||||||||
Sbjct: 8950927 aggagacgcgcgccgccgccgccgataaggcgcggcaggcc 8950967
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>dbj|AK121575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036H02, full
            insert sequence
          Length = 1540

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 59   gccgccgagaaggcgaggcaggccaagga 87
            |||| |||||||||||||||| |||||||
Sbjct: 993  gccggcgagaaggcgaggcagtccaagga 1021
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 114     acaccgacgccaccaagggga 134
               |||||||||||||||||||||
Sbjct: 2460808 acaccgacgccaccaagggga 2460788



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     gcacggcatccggctgggcg 350
               ||||||||||||||||||||
Sbjct: 2469190 gcacggcatccggctgggcg 2469209
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>gb|AY365117.2| Mycobacterium vanbaalenii strain PYR-1 phenanthree degradation pathway
             gene cluster, complete sequence
          Length = 37237

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   acggcatccggctgggcgac 352
             ||||||||||||||||||||
Sbjct: 34403 acggcatccggctgggcgac 34422
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 426     tggccaaggagcgggcggcggagc 449
               ||||||||||||||||||| ||||
Sbjct: 3810091 tggccaaggagcgggcggccgagc 3810114
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>emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chromosome 9 Contains a
             gene for a novel protein (MGC35463), complete sequence
          Length = 107891

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   cagcagcacgacgctgcagg 330
             ||||||||||||||||||||
Sbjct: 45346 cagcagcacgacgctgcagg 45327
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>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 426  tggccaaggagcgggcggcggagc 449
            ||||||||||||||||||| ||||
Sbjct: 2040 tggccaaggagcgggcggccgagc 2063
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>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             13/14
          Length = 316050

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 426   tggccaaggagcgggcggcggagc 449
             ||||||||||||||||||| ||||
Sbjct: 20553 tggccaaggagcgggcggccgagc 20576
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     cgggcggcggagcggctgga 456
               ||||||||||||||||||||
Sbjct: 3605148 cgggcggcggagcggctgga 3605129
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>emb|CR616618.1| full-length cDNA clone CS0DB001YF19 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 1449

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ggagcgggcggcggagcggc 452
           ||||||||||||||||||||
Sbjct: 48  ggagcgggcggcggagcggc 67
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>emb|CR613339.1| full-length cDNA clone CS0DF034YE01 of Fetal brain of Homo sapiens
           (human)
          Length = 1406

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ggagcgggcggcggagcggc 452
           ||||||||||||||||||||
Sbjct: 22  ggagcgggcggcggagcggc 41
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>emb|CR599986.1| full-length cDNA clone CS0DL002YA24 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1421

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ggagcgggcggcggagcggc 452
           ||||||||||||||||||||
Sbjct: 12  ggagcgggcggcggagcggc 31
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>gb|AE012115.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 23 of
            460 of the complete genome
          Length = 10703

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  gcgacgaggacgagcgcgag 367
            ||||||||||||||||||||
Sbjct: 2710 gcgacgaggacgagcgcgag 2729
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     cgccgccgagaaggcgaggcaggc 81
              ||||| ||||||||||||||||||
Sbjct: 451101 cgccgtcgagaaggcgaggcaggc 451078
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 486     gcgccggctcgtcctgcgcgcacc 509
               ||||||||||||||| ||||||||
Sbjct: 1979769 gcgccggctcgtccttcgcgcacc 1979746
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>emb|CR389393.1| Gallus gallus finished cDNA, clone ChEST185a6
          Length = 717

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gctccggcacgcagcagcac 319
           ||||||||||||||||||||
Sbjct: 212 gctccggcacgcagcagcac 231
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    gcgacgaggacgagcgcgag 367
              ||||||||||||||||||||
Sbjct: 246116 gcgacgaggacgagcgcgag 246135
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>gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-854A13, complete sequence
          Length = 185351

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ggagcgggcggcggagcggc 452
             ||||||||||||||||||||
Sbjct: 39274 ggagcgggcggcggagcggc 39255
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>gb|AC012360.7| Homo sapiens BAC clone RP11-332H14 from 2, complete sequence
          Length = 200918

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aaggcgaggcaggccaagga 87
              ||||||||||||||||||||
Sbjct: 147079 aaggcgaggcaggccaagga 147060
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>gb|AF466932.1| Zea mays clone BAC 206C17, complete sequence
          Length = 99156

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  gcgacacacgcgcccgcacg 554
            ||||||||||||||||||||
Sbjct: 3084 gcgacacacgcgcccgcacg 3065
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>gb|AF525490.2| Streptomyces griseus fredericamycin biosynthetic gene cluster,
            complete sequence
          Length = 33064

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  cggcctgttcggggcgctgg 260
            ||||||||||||||||||||
Sbjct: 3805 cggcctgttcggggcgctgg 3786
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 450     ggctggacaaatgcgtcgag 469
               ||||||||||||||||||||
Sbjct: 2791327 ggctggacaaatgcgtcgag 2791346
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>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 548    ccgcacgcgggcgcgccttc 567
              ||||||||||||||||||||
Sbjct: 130962 ccgcacgcgggcgcgccttc 130943
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>gb|BC060859.1| Homo sapiens family with sequence similarity 100, member B, mRNA
           (cDNA clone MGC:71792 IMAGE:30333976), complete cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ggagcgggcggcggagcggc 452
           ||||||||||||||||||||
Sbjct: 173 ggagcgggcggcggagcggc 192
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>gb|BC035511.2| Homo sapiens family with sequence similarity 100, member B, mRNA
           (cDNA clone MGC:29814 IMAGE:5091979), complete cds
          Length = 1426

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ggagcgggcggcggagcggc 452
           ||||||||||||||||||||
Sbjct: 8   ggagcgggcggcggagcggc 27
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 433    ggagcgggcggcggagcggctgga 456
              ||||| ||||||||||||||||||
Sbjct: 199539 ggagcaggcggcggagcggctgga 199562
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>ref|NM_182565.2| Homo sapiens family with sequence similarity 100, member B
           (FAM100B), mRNA
          Length = 1426

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 ggagcgggcggcggagcggc 452
           ||||||||||||||||||||
Sbjct: 8   ggagcgggcggcggagcggc 27


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,305,483
Number of Sequences: 3902068
Number of extensions: 4305483
Number of successful extensions: 79482
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77256
Number of HSP's gapped (non-prelim): 2225
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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