ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6a22 |
|---|---|
| Clone Library Name | barley_pub |
>BIG2_HUMAN (Q9Y6D5) Brefeldin A-inhibited guanine nucleotide-exchange protein 2| (Brefeldin A-inhibited GEP 2) Length = 1785 Score = 88.2 bits (217), Expect = 4e-18 Identities = 40/71 (56%), Positives = 52/71 (73%) Frame = +3 Query: 165 MNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASDPRVFSLTKIAEITHYNMNRIRLXW 344 ++R+F S L+ I+DFV+ LC VSM+EL S PR+FSL KI EI++YNMNRIRL W Sbjct: 1072 VDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYNMNRIRLQW 1131 Query: 345 SSIWHVLSEFF 377 S IWHV+ + F Sbjct: 1132 SRIWHVIGDHF 1142
>SEC72_SCHPO (Q9P7V5) Protein transport protein sec72| Length = 1822 Score = 85.1 bits (209), Expect = 4e-17 Identities = 40/87 (45%), Positives = 62/87 (71%), Gaps = 3/87 (3%) Frame = +3 Query: 126 AVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASD---PRVFSLTK 296 AV+ L+ + ++R+F ++ +L+ I+ F KALC+VS +E+ S+SD PR++SL K Sbjct: 1137 AVSELMSTEVVLSIDRIFTQTSSLSGSAIVSFFKALCEVSWDEITSSSDLEQPRLYSLQK 1196 Query: 297 IAEITHYNMNRIRLXWSSIWHVLSEFF 377 + EI++YNM RIR+ WSSIW+VL FF Sbjct: 1197 LVEISYYNMQRIRVEWSSIWNVLGRFF 1223
>BIG1_HUMAN (Q9Y6D6) Brefeldin A-inhibited guanine nucleotide-exchange protein 1| (Brefeldin A-inhibited GEP 1) (p200 ARF-GEP1) (p200 ARF guanine nucleotide exchange factor) Length = 1849 Score = 84.3 bits (207), Expect = 6e-17 Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 12/119 (10%) Frame = +3 Query: 57 SKRGTYDSA-----GVGGKASGVDQMNNAVTILLEQVG-------MAEMNRVFIRSQNLN 200 S GT D A G+G VD + + E +G + ++R+F S L+ Sbjct: 1079 SLTGTKDQAPDEFVGLGLVGGNVDWKQ--IASIQESIGETSSQSVVVAVDRIFTGSTRLD 1136 Query: 201 SEGIIDFVKALCKVSMEELRSASDPRVFSLTKIAEITHYNMNRIRLXWSSIWHVLSEFF 377 I+DFV+ LC VSM+EL S + PR+FSL KI EI++YNM RIRL WS IW V+ + F Sbjct: 1137 GNAIVDFVRWLCAVSMDELLSTTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGDHF 1195
>BIG1_BOVIN (O46382) Brefeldin A-inhibited guanine nucleotide-exchange protein 1| (Brefeldin A-inhibited GEP 1) (p200 ARF-GEP1) (p200 ARF guanine nucleotide exchange factor) Length = 1849 Score = 84.3 bits (207), Expect = 6e-17 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Frame = +3 Query: 3 KSSXIPGLKKKAPNAGAASKRGTYDSAGVGGKASGVDQMNNAVTILLEQVG-------MA 161 + + G K +AP+ + G+G VD + + E +G + Sbjct: 1076 REGSLTGAKDQAPD----------EFVGLGLVGGNVDWKQ--IASIQESIGETSSQSVVV 1123 Query: 162 EMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASDPRVFSLTKIAEITHYNMNRIRLX 341 ++R+F S L+ I+DFV+ LC VSM+EL S + PR+FSL KI EI++YNM RIRL Sbjct: 1124 AVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELLSTTHPRMFSLQKIVEISYYNMGRIRLQ 1183 Query: 342 WSSIWHVLSEFF 377 WS IW V+ + F Sbjct: 1184 WSRIWEVIGDHF 1195
>SEC71_SCHPO (Q9UT02) Protein transport protein sec71| Length = 1811 Score = 81.3 bits (199), Expect = 5e-16 Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 3/74 (4%) Frame = +3 Query: 165 MNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSA---SDPRVFSLTKIAEITHYNMNRIR 335 ++ +F ++NL SEGI DFVKAL +VS EE+ + S+PR+FSL K+ EI++YNM RIR Sbjct: 1150 VDMLFSNTRNLGSEGIYDFVKALIEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIR 1209 Query: 336 LXWSSIWHVLSEFF 377 + WSSIW +L +F Sbjct: 1210 MEWSSIWSLLGTYF 1223
>SEC7_YEAST (P11075) Protein transport protein SEC7| Length = 2009 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 3/74 (4%) Frame = +3 Query: 165 MNRVFIRSQNLNSEGIIDFVKALCKVSMEELRS---ASDPRVFSLTKIAEITHYNMNRIR 335 M+ +F +S L+ I+DF+KAL VS+EE+ S AS PR+FSL K+ ++ +YNM+RI+ Sbjct: 1271 MDNIFTKSSELSGNAIVDFIKALTAVSLEEIESSENASTPRMFSLQKMVDVCYYNMDRIK 1330 Query: 336 LXWSSIWHVLSEFF 377 L W+ +W V+ + F Sbjct: 1331 LEWTPLWAVMGKAF 1344
>ISPH_CAUCR (Q9A345) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 319 Score = 33.1 bits (74), Expect = 0.17 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Frame = +3 Query: 93 GKASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASD 272 G +GVD+ V +E+ G V++R + +++ ++D +KAL V +EEL A D Sbjct: 20 GFCAGVDRAIQIVERAVEKFGAP----VYVRHEIVHNRHVVDRLKALGAVFIEELEEAPD 75 Query: 273 --PRVFS 287 P VFS Sbjct: 76 DRPVVFS 82
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 31.2 bits (69), Expect = 0.64 Identities = 17/76 (22%), Positives = 34/76 (44%) Frame = +3 Query: 126 AVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASDPRVFSLTKIAE 305 A + LE + + ++ S+ L E + + +KAL V+ +E + F L + Sbjct: 1103 AKRVALECIKQCDPEKMITESKFLQLESLQELMKALVSVTPDEETYDEEDAAFCLEMLLR 1162 Query: 306 ITHYNMNRIRLXWSSI 353 I N +R+ W ++ Sbjct: 1163 IVLENRDRVGCVWQTV 1178
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 31.2 bits (69), Expect = 0.64 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 120 SFDQHQKLFHPHQHCHKYLF*KQHQHLEPS 31 S QHQ HPH H H + QH H +P+ Sbjct: 199 SVAQHQHQSHPHSHHHHHQNHHQHPHQQPA 228
>BAF1_KLUMA (P33293) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 496 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = -2 Query: 114 DQHQ-KLFHPHQHCHKYLF*KQHQH 43 DQHQ +L H HQH H++ QHQH Sbjct: 289 DQHQHQLQHQHQHQHQHQHQHQHQH 313
>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1856 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/76 (21%), Positives = 34/76 (44%) Frame = +3 Query: 126 AVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASDPRVFSLTKIAE 305 A + L+ + + ++ S+ L E + + +KAL V+ +E + F L + Sbjct: 1101 AKRVALDCIKQCDPEKMITESKFLQLESLQELMKALVSVTADEETYDEEDAAFCLEMLLR 1160 Query: 306 ITHYNMNRIRLXWSSI 353 I N +R+ W ++ Sbjct: 1161 IVLENRDRVGCVWQTV 1176
>PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC 2.7.11.1)| (p21-activated kinase-related protein) (Protein mushroom bodies tiny) Length = 639 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -2 Query: 114 DQHQKLFHPHQHCHKYLF*KQHQHLEPSFSNQEXS 10 DQ+Q HPH H H + HQHL S S S Sbjct: 288 DQNQNPLHPHAHPHPH----HHQHLAKSASRASSS 318
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = -2 Query: 126 HYSFDQHQKLFHPHQHCHKYLF*KQHQHLEPS 31 H+ HQ HPH H H + H H PS Sbjct: 204 HHQHQHHQHPAHPHSHQHPHPHPHPHPHPHPS 235
>STAU_DROME (P25159) Maternal effect protein staufen| Length = 1026 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -2 Query: 132 SPHYSFDQHQKLFHPHQHCHKYLF*KQHQHLEPSFSNQE 16 +PH H H H H H +L QHL PS Q+ Sbjct: 11 APHIRAAHH----HSHSHAHMHLHPGMEQHLGPSLQQQQ 45
>FGRL1_HUMAN (Q8N441) Fibroblast growth factor receptor-like 1 precursor (FGF| receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor) Length = 504 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 159 PSPLAPRGLSPHYSFDQHQKLFHPHQHCHKYLF*KQHQHL 40 P P+A L P D H H H H H ++ K HQH+ Sbjct: 462 PGPVAGPKLYPKLYTDIHTHT-HTHSHTHSHVEGKVHQHI 500
>U3IP2_HUMAN (O43818) U3 small nucleolar RNA-interacting protein 2 (U3 small| nucleolar ribonucleoproptein-associated 55-kDa protein) (U3 snoRNP-associated 55-kDa protein) (U3-55K) Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/78 (28%), Positives = 35/78 (44%) Frame = +3 Query: 45 AGAASKRGTYDSAGVGGKASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFV 224 AGA +R DSAG GK+ G +MN ++ E +A + L E + Sbjct: 21 AGAGKRRRKADSAGDRGKSKGGGKMNEEISSDSESESLAPRKPEEEEEEEL-EETAQEKK 79 Query: 225 KALCKVSMEELRSASDPR 278 L K+ +E+LR + + Sbjct: 80 LRLAKLYLEQLRQQEEEK 97
>GLPO_ENTCA (O86963) Alpha-glycerophosphate oxidase (EC 1.1.3.21)| (Glycerol-3-phosphate oxidase) Length = 608 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -3 Query: 188 TSYEYTIHFSHPHLLQEDCHRIIHLINTR 102 T +YT F+HP + QED ++ ++N R Sbjct: 299 TDTDYTGDFAHPTVTQEDVDYLLTIVNER 327
>NEK1_MOUSE (P51954) Serine/threonine-protein kinase Nek1 (EC 2.7.11.1)| (NimA-related protein kinase 1) Length = 1203 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = -2 Query: 186 FL*IHDSFQPSPLAPRGLSPHYS--FDQHQKL 97 F I + PSP +PRG HY FDQ Q+L Sbjct: 424 FFGIGGAVSPSPCSPRGQYEHYHAIFDQMQRL 455
>YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 intergenic| region Length = 267 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Frame = -3 Query: 302 SNLSQAKNTWIRSRPQFLH*NLTKGLYKINYTFTVEILTSYEYTIHFSHPHLLQE---DC 132 ++L+QA+ I+S PQF + N+ G + Y ++L ++ HF + ++ DC Sbjct: 115 TSLTQAQTDTIQSLPQFCNSNVLSGEPLVQYQAFNDLLALFKSFSHFGNILVISSHSYDC 174 Query: 131 HRIIHLIN 108 + LI+ Sbjct: 175 ALLKFLIS 182
>ISPH_SILPO (Q5LNJ7) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = +3 Query: 93 GKASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASD 272 G +GVD+ V + +E+ G V++R + ++++ ++D ++A V +EEL D Sbjct: 15 GFCAGVDRAIKIVEMAIEKWGAP----VYVRHEIVHNKFVVDGLRAKGAVFVEELDECPD 70 Query: 273 PR 278 R Sbjct: 71 DR 72
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 27 KKKAPNAGAASKRGTYDSAGVGGKASGVDQMNNAVT 134 K++ P A AA+ GVGG ASGV N T Sbjct: 8 KRREPTAAAAAAVAAGVGGGVGGGASGVATANTNTT 43
>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 502 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 222 VKALCKVSMEELRSASDPRVFSLTKIAEITHYNMNRIRLXWSSI 353 V L +VS + +AS P FSL + ++YN+N++ L SI Sbjct: 224 VTELVRVSQTPVATASGPN-FSLADLESPSYYNINQVTLGRRSI 266
>NFIX_MOUSE (P70257) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 488 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 222 VKALCKVSMEELRSASDPRVFSLTKIAEITHYNMNRIRLXWSSI 353 V L +VS + +AS P FSL + ++YN+N++ L SI Sbjct: 224 VTELVRVSQTPVATASGPN-FSLADLESPSYYNINQVTLGRRSI 266
>CDC7_SCHPO (P41892) Cell division control protein 7 (EC 2.7.11.1)| Length = 1062 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/67 (23%), Positives = 34/67 (50%) Frame = +3 Query: 114 QMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASDPRVFSLT 293 ++ +L E+ + + +VF SQ+ +S ++D + +C++S S P +F Sbjct: 904 ELREVQRVLAEKRNVQLVLKVFCISQSASSNRMLDTLGRVCQISPRLAASYGQPIIFQKF 963 Query: 294 KIAEITH 314 K ++TH Sbjct: 964 K-EKLTH 969
>NFIX_MESAU (P13623) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 441 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 222 VKALCKVSMEELRSASDPRVFSLTKIAEITHYNMNRIRLXWSSI 353 V L +VS + +AS P FSL + ++YN+N++ L SI Sbjct: 224 VTELVRVSQTPVATASGPN-FSLADLESPSYYNINQVTLGRRSI 266
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -2 Query: 126 HYSFDQHQKLFHPH-QHCHKYLF*KQHQH 43 H+S +QH HPH H H++ +QH H Sbjct: 354 HHSHEQHPHGHHPHAHHPHEHDTHRQHPH 382
>CBS_YEAST (P32582) Cystathionine beta-synthase (EC 4.2.1.22) (Serine| sulfhydrase) (Beta-thionase) Length = 507 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = +3 Query: 63 RGTYDSAGVGGKASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDF 221 R AG GG SG+ + ++ VG + + +NLN I D+ Sbjct: 189 RAVVAGAGTGGTISGISKYLKEQNDKIQIVGADPFGSILAQPENLNKTDITDY 241
>DCDA_BUCBP (Q89AC6) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 418 Score = 27.3 bits (59), Expect = 9.2 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 18/95 (18%) Frame = -3 Query: 317 VMRDFSNLSQAKNTWIRSRPQFLH*NLTK----------GLYKINYTFTVEILTSYEYTI 168 ++ +S N W+R P+F H + K G++ IN F +T Y + + Sbjct: 124 MLEQVGKISPGHNIWLRINPKFGHGHSKKTNTGGENSKHGIWDINLAF--PYITKYNFKL 181 Query: 167 HFSHPHL--------LQEDCHRIIHLINTRSFSTH 87 H H+ L+ C +I + F H Sbjct: 182 IGLHMHIGSGVDYCHLKRVCKAMIDQVLQCKFKIH 216
>SY63_DISOM (P24507) Synaptotagmin C (Synaptic vesicle protein O-p65-C)| Length = 537 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 153 PLAPRGLSPHYSFDQHQKLFHPHQHCHKY 67 P +GL+P QH HPHQH H + Sbjct: 84 PWRDKGLNPQRRDSQH----HPHQHLHHH 108
>ANM7_MOUSE (Q922X9) Protein arginine N-methyltransferase 7 (EC 2.1.1.-)| Length = 692 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 191 LTSYEYTIHFSHPHLLQEDCHRIIH 117 L SYE+ +H HL+QEDC + H Sbjct: 156 LPSYEH----AHKHLVQEDCEAVPH 176
>ISPH_HAEDU (Q7VPK4) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 314 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = +3 Query: 93 GKASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASD 272 G +GVD+ + V + LE G +++R + +++ ++D +KA + +EEL D Sbjct: 10 GFCAGVDRAISIVELALEVHGAP----IYVRHEVVHNRFVVDDLKAKGAIFVEELDEVPD 65 Query: 273 PRV 281 + Sbjct: 66 SAI 68
>YL091_MIMIV (Q5UPG7) Putative ankyrin repeat protein L91| Length = 642 Score = 27.3 bits (59), Expect = 9.2 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +3 Query: 99 ASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNLNSEGIIDFVKALCKVSMEELRSASDPR 278 A+ + + NN T L+ V +N V + +N + D V M +++ D Sbjct: 219 ANTLHKDNNGFTALIHAVSHCPLNIVKLLVKNGSDVNATDNEGK--SVLMHSTKNSIDIV 276 Query: 279 VFSLTKIAEITHYNMNRIR-LXWSSIWHVLSE 371 + L K AEI H N N I L ++S HV S+ Sbjct: 277 KYLLKKGAEINHKNNNDINVLFFASKNHVKSD 308
>PTP3_ENCCU (Q8MTP3) Polar tube protein 3 precursor| Length = 1256 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Frame = +3 Query: 30 KKAPNAGAASKRGTYDSAGVGGKASGVDQMNNAV--------TILLEQVGMAEMNRV--F 179 +K N A +KR ++ G KA+ VD+ N + + + +V + +++ + Sbjct: 964 QKIGNGKALAKRNAFNGKVDGEKAAIVDEYNKELINEHLSPSSTVEARVRNSIISKAESY 1023 Query: 180 IRSQNLNSEGIIDFVKALCKVSMEELRSASDPRVFSLTKIAEITHYN 320 RS ++++ ++ + L S++E+ S ++ + +AE YN Sbjct: 1024 ARSMGISTQSFLNMISQLPDSSIKEMISYNEAPPSARKDVAETHFYN 1070
>U3IP2_MOUSE (Q91WM3) U3 small nucleolar RNA-interacting protein 2 (U3 small| nucleolar ribonucleoproptein-associated 55-kDa protein) (U3 snoRNP-associated 55-kDa protein) (U3-55K) Length = 475 Score = 27.3 bits (59), Expect = 9.2 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Frame = +3 Query: 30 KKAPNAGAA----SKRGTYDSAGVGGKASGVDQMNNAVTILLEQVGMAEMNRVFIRSQNL 197 K AP GAA +R DSA GK+ G +MN ++ E +A + L Sbjct: 12 KPAPGPGAAPVAGKRRRKVDSAADRGKSKGGGKMNEEISSDSESESLAPRKTEEEEEEEL 71 Query: 198 NSEGIIDFVKALCKVSMEELRSASDPR 278 E + L K+ +E+LR + + Sbjct: 72 -EETAQEKKLRLAKLYLEQLRQQEEEK 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,224,447 Number of Sequences: 219361 Number of extensions: 915399 Number of successful extensions: 2706 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2660 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
