ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6a18 |
|---|---|
| Clone Library Name | barley_pub |
>ANGL1_HUMAN (O95841) Angiopoietin-related protein 1 precursor| (Angiopoietin-like 1) (Angiopoietin-3) (ANG-3) Length = 491 Score = 35.8 bits (81), Expect = 0.095 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 295 WSGLSNARVTIFGDVYPLPAEQQEWAHKQYVAKHQQWASQQWGNFYYYRMQNISDIYFIG 474 W GL N + D Y L E ++W+ K+ A++ + + FY R+ + G Sbjct: 350 WLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLRLGT-----YQG 404 Query: 475 GFG-TVAWVDVKQYETIQPDK 534 G ++ W + KQ+ T+ DK Sbjct: 405 NAGDSMMWHNGKQFTTLDRDK 425
>ANGL1_MOUSE (Q640P2) Angiopoietin-related protein 1 precursor| (Angiopoietin-like 1) Length = 490 Score = 35.0 bits (79), Expect = 0.16 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Frame = +1 Query: 295 WSGLSNARVTIFGDVYPLPAEQQEWAHKQYVAKHQQWASQQWGNFYYYRMQNISDIYFIG 474 W GL N D Y L E ++W+ K+ A++ + + ++Y R+ + G Sbjct: 349 WLGLDNIYKLSNQDNYKLMIELEDWSEKKVYAEYSSFRLEPESDYYRLRLGT-----YQG 403 Query: 475 GFG-TVAWVDVKQYETIQPDKIAVDG 549 G ++ W + KQ+ T+ DK G Sbjct: 404 NAGDSMMWHNGKQFTTLDRDKDTYTG 429
>CREG1_HUMAN (O75629) CREG1 protein precursor (Cellular repressor of| E1A-stimulated genes 1) Length = 220 Score = 32.7 bits (73), Expect = 0.81 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 14/136 (10%) Frame = +1 Query: 157 GYPFGSLVDFAND----SMGHPIFSLSPLAIHTRNLLSDPRCTLVVQVP--------GWS 300 G PF ++ ++ G P F LSPL + NL +P TL + + G+ Sbjct: 82 GRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFD 141 Query: 301 GLSN--ARVTIFGDVYPLPAEQQEWAHKQYVAKHQQWASQQWGNFYYYRMQNISDIYFIG 474 S + + G V + + + A +H + + + +++ NI++I+ + Sbjct: 142 PQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLD 201 Query: 475 GFGTVAWVDVKQYETI 522 FG V ++Y + Sbjct: 202 YFGGPKIVTPEEYYNV 217
>CREG1_MOUSE (O88668) CREG1 protein precursor (Cellular repressor of| E1A-stimulated genes 1) Length = 220 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 14/133 (10%) Frame = +1 Query: 157 GYPFGSLVDFAN----DSMGHPIFSLSPLAIHTRNLLSDPRCTLVVQVPGWSGLSN---- 312 G+PF ++ ++ + G P LSPL +L +P TL + + N Sbjct: 82 GWPFADIISISDGPPGEGTGEPYMYLSPLQQAVSDLQENPEATLTMSLAQTVYCRNHGFD 141 Query: 313 ------ARVTIFGDVYPLPAEQQEWAHKQYVAKHQQWASQQWGNFYYYRMQNISDIYFIG 474 + + G V + ++++A +H + + +++ IS I+ + Sbjct: 142 PQSPLCVHIMMSGTVTKVNKTEEDYARDSLFVRHPEMKHWPSSHNWFFAKLKISRIWVLD 201 Query: 475 GFGTVAWVDVKQY 513 FG V ++Y Sbjct: 202 YFGGPKVVTPEEY 214
>BUB1_MOUSE (O08901) Mitotic checkpoint serine/threonine-protein kinase BUB1| (EC 2.7.11.1) (MBUB1) (BUB1A) Length = 1058 Score = 30.4 bits (67), Expect = 4.0 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +1 Query: 58 GLPPPALAVRNLME-QARFAHLCTVMSGMHHRRAGYPFGSLVDFANDSMGHPIFSLSPLA 234 GL P + N E Q++ + T + Y GSL+ + N +G F+ A Sbjct: 727 GLSKPVTSYSNTFEWQSKLPAIKT--------KTEYQLGSLLVYVNHLLGEGAFAQVFEA 778 Query: 235 IH--TRNLLSDPRCTLVVQVP 291 IH RN S+ +C L VQ P Sbjct: 779 IHGDVRNAKSEQKCILKVQRP 799
>EF3_CANGA (O93796) Elongation factor 3 (EF-3)| Length = 1045 Score = 29.6 bits (65), Expect = 6.8 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%) Frame = +2 Query: 335 MSTLCQLNNR------NGLISNTLQNINNGRL--NSGEIFTTTGCRISVTYILLEALA 484 +S C L++R NG +TL N+ G L SGE++T CRI+ YI A A Sbjct: 687 ISFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA--YIKQHAFA 742
>UBP21_MOUSE (Q9QZL6) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)| (Ubiquitin thioesterase 21) (Ubiquitin-specific processing protease 21) (Deubiquitinating enzyme 21) Length = 566 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 172 SLVDFANDSMGHPIFSLSPLAIHTRNLLSDPRCTLVVQVPGWSGLSNARVT 324 SL DFA+D G P++ L L H+ ++ L GW +++RV+ Sbjct: 489 SLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVS 539
>UBP21_HUMAN (Q9UK80) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)| (Ubiquitin thioesterase 21) (Ubiquitin-specific-processing protease 21) (Deubiquitinating enzyme 21) (NEDD8-specific protease) Length = 565 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 172 SLVDFANDSMGHPIFSLSPLAIHTRNLLSDPRCTLVVQVPGWSGLSNARVT 324 SL DFA+D G P++ L L H+ ++ L GW +++RV+ Sbjct: 488 SLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVS 538
>PHLC_LISIV (Q9RLV9) Sphingomyelinase C precursor (EC 3.1.4.12) (Sphingomyelin| phosphodiesterase) (SMase) Length = 335 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +1 Query: 352 AEQQEWAHKQYVAKHQQWASQQWGNFYYYRMQNISDIYFIGGF 480 A W +K K QW+ + W F Y Q+ SD Y + GF Sbjct: 291 ARPHSWHNKVLHTKSPQWSVKSW--FKTYTYQDFSDHYPVVGF 331
>DNAE2_BORPA (Q7W9W1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 29.3 bits (64), Expect = 8.9 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +1 Query: 64 PPPALAVRNLMEQARF-AHLC-----TVMSGMHHRRAGYPFGSLVDFANDSMGHPIFSLS 225 PPP LA L EQAR+ A C ++ +HH R + V+ A + G PI +L Sbjct: 143 PPPGLAAERLAEQARWLAAQCPGRAWIGLTLLHHCRDDL-HRAAVEHAAHASGLPIVALG 201 Query: 226 PLAIHTRN 249 +H R+ Sbjct: 202 QAQMHRRS 209
>DNAE2_BORBR (Q7WHW8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 29.3 bits (64), Expect = 8.9 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +1 Query: 64 PPPALAVRNLMEQARF-AHLC-----TVMSGMHHRRAGYPFGSLVDFANDSMGHPIFSLS 225 PPP LA L EQAR+ A C ++ +HH R + V+ A + G PI +L Sbjct: 143 PPPGLAAERLAEQARWLAAQCPGRAWIGLTLLHHCRDDL-HRAAVEHAAHASGLPIVALG 201 Query: 226 PLAIHTRN 249 +H R+ Sbjct: 202 QAQMHRRS 209
>EF3B_YEAST (P53978) Elongation factor 3B (EF-3B) (Translation elongation| factor 3B) (Homolog of EF-3) Length = 1043 Score = 29.3 bits (64), Expect = 8.9 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +2 Query: 347 CQLNNR------NGLISNTLQNINNGRL--NSGEIFTTTGCRISVTYILLEALA 484 C L++R NG +TL N+ G L SGE++T CRI+ YI A A Sbjct: 690 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA--YIKQHAFA 741
>EF3A_YEAST (P16521) Elongation factor 3A (EF-3A) (EF-3) (Translation| elongation factor 3A) (Eukaryotic elongation factor 3) (eEF3) (Yeast elongation factor 3) Length = 1043 Score = 29.3 bits (64), Expect = 8.9 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +2 Query: 347 CQLNNR------NGLISNTLQNINNGRL--NSGEIFTTTGCRISVTYILLEALA 484 C L++R NG +TL N+ G L SGE++T CRI+ YI A A Sbjct: 690 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA--YIKQHAFA 741
>NMDE2_RAT (Q00960) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) Length = 1482 Score = 29.3 bits (64), Expect = 8.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 459 HIFYWRLWHCCMGRC 503 H+FYW+ HC MG C Sbjct: 840 HLFYWQFRHCFMGVC 854
>NMDE2_MOUSE (Q01097) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) Length = 1482 Score = 29.3 bits (64), Expect = 8.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 459 HIFYWRLWHCCMGRC 503 H+FYW+ HC MG C Sbjct: 840 HLFYWQFRHCFMGVC 854
>YGIQ_SHIFL (Q83JL2) UPF0313 protein ygiQ| Length = 739 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = +1 Query: 253 LSDPRCTLVV---QVPGWSGLSNARVTIFGDVYPLP 351 + D R T ++ +PGWSG+ + R+ G + P+P Sbjct: 217 IRDVRNTAIIVKEALPGWSGVDSTRLDTLGKIDPIP 252
>NMDE2_HUMAN (Q13224) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3) Length = 1484 Score = 29.3 bits (64), Expect = 8.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 459 HIFYWRLWHCCMGRC 503 H+FYW+ HC MG C Sbjct: 840 HLFYWQFRHCFMGVC 854 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,080,649 Number of Sequences: 219361 Number of extensions: 2020489 Number of successful extensions: 5617 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5604 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
