ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6a09 |
|---|---|
| Clone Library Name | barley_pub |
>FLA1_CAMJE (P56963) Flagellin A| Length = 571 Score = 31.6 bits (70), Expect = 1.9 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Frame = -3 Query: 376 ATQFIGDSSILDLELRKLMRILKGLIERTFCTIAYRRGIPSSLSYVAHTWSL*KALSVRS 197 ATQFI +S+ +R KG I+ IA G S+ V + + S Sbjct: 353 ATQFISQASVS-------LRESKGQID---ANIADAMGFGSANKGVVLGGYSSVSAYMSS 402 Query: 196 LSKSWKSGSGTSIETGTRFCSGFFSSVAV-AGTWVSTLIELHSFSPLPSLPERTPFA 29 + SGSG S+ +G + +GF +++A+ A + +ST+ + + S S + FA Sbjct: 403 AGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSTVYNVSAGSGFSSGSTLSQFA 459
>OR6P1_HUMAN (Q8NGX9) Olfactory receptor 6P1 (Olfactory receptor OR1-12)| Length = 317 Score = 30.4 bits (67), Expect = 4.3 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -3 Query: 463 LTLCENMLTVSVIWYLPTLKSPHVFWKPEATQFIGDSSILDL 338 LTL EN L V IW P+L P F F+G S L+L Sbjct: 37 LTLLENALIVFTIWLAPSLHRPMYF-------FLGHLSFLEL 71
>FLB1_CAMJE (P56964) Flagellin B| Length = 571 Score = 30.0 bits (66), Expect = 5.6 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Frame = -3 Query: 376 ATQFIGDSSILDLELRKLMRILKGLIERTFCTIAYRRGIPSSLSYVAHTWSL*KALSVRS 197 ATQFI +S+ +R KG + IA G S+ V + + S Sbjct: 353 ATQFISQASVS-------LRESKGRFD---ANIADAMGFGSANKGVVLGGYSSVSAYMSS 402 Query: 196 LSKSWKSGSGTSIETGTRFCSGFFSSVAV-AGTWVSTLIELHSFSPLPSLPERTPFA 29 + SGSG S+ +G + +GF +++A+ A + +ST+ + + S S + FA Sbjct: 403 AGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSTVYNVSAGSGFSSGSTLSQFA 459
>FLB3_CAMJE (Q46114) Flagellin B| Length = 574 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = -3 Query: 199 SLSKSWKSGSGTSIETGTRFCSGFFSSVAV-AGTWVSTLIELHSFSPLPSLPERTPFAFT 23 S + SGSG S+ +G + +GF +++A+ A + +S + + + S S + FA Sbjct: 402 STGSGFSSGSGFSVGSGKNYSTGFANTIAISAASQLSAVYNVSAGSGFSSGSNLSQFATM 461 Query: 22 LLSLGYT 2 S G T Sbjct: 462 KTSAGNT 468
>FLA3_CAMJE (Q46113) Flagellin A| Length = 574 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = -3 Query: 199 SLSKSWKSGSGTSIETGTRFCSGFFSSVAV-AGTWVSTLIELHSFSPLPSLPERTPFAFT 23 S + SGSG S+ +G + +GF +++A+ A + +S + + + S S + FA Sbjct: 402 STGSGFSSGSGFSVGSGKNYSTGFANTIAISAASQLSAVYNVSAGSGFSSGSNLSQFATM 461 Query: 22 LLSLGYT 2 S G T Sbjct: 462 KTSAGNT 468
>HIS8_BUCDN (Q84I53) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 363 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 6/47 (12%) Frame = -2 Query: 260 SILTVICSPYLVTIKSSLCAI------LIKIMEVRVWDINRNRHTLL 138 +IL I SPY ++I ++ A+ IK+M+ RV D+N NR L+ Sbjct: 235 NILNKIISPYPISIPTASIALESLHKNYIKLMQNRVLDLNANRVWLI 281
>YDS4_SCHPO (O14180) Hypothetical protein C4F8.04 in chromosome I| Length = 306 Score = 29.6 bits (65), Expect = 7.3 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 10/108 (9%) Frame = +3 Query: 120 DEKNPEQKRVPVSIDVP---------DPDFHDFDKDRTERAFYSDQVWATYDSED-GMPR 269 +EK+PE+KR+ +S ++P D + D +A D ++ Y SE+ +P+ Sbjct: 36 EEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPK 95 Query: 270 LYAMVQKVLSMRPFRIRMSFLNSKSNIELSPINWVASGFQKTCGDFRV 413 L K S + + L+ N E F+K GD V Sbjct: 96 LLVTTSKRASRKCYDFASELLDCFPNAE----------FRKRTGDIEV 133
>NOS_RHOPR (Q26240) Nitric-oxide synthase, salivary gland (EC 1.14.13.39)| (NOS) Length = 1174 Score = 29.6 bits (65), Expect = 7.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 414 GRYQITETVNIFSHKVSWTKGPRGIIRI 497 G Y++TET ++ K++W PR I RI Sbjct: 139 GTYELTETELVYGAKLAWRNAPRCIGRI 166
>GLGB_VIBVY (Q7MG90) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 715 Score = 29.6 bits (65), Expect = 7.3 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 471 KGPRGIIRIVPQKGDTWALYRDWSPDWNELTPDDVIYKYE 590 KGP+G +P K D W Y + P + +T D Y+++ Sbjct: 181 KGPKG--EGLPHKADPWGFYAEQYPSFASVTYDHARYQWQ 218
>GLGB_VIBVU (Q8D4P0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 715 Score = 29.6 bits (65), Expect = 7.3 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 471 KGPRGIIRIVPQKGDTWALYRDWSPDWNELTPDDVIYKYE 590 KGP+G +P K D W Y + P + +T D Y+++ Sbjct: 181 KGPKG--EGLPHKADPWGFYAEQYPSFASVTYDHARYQWQ 218
>POLG_LANVY (P29838) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E] (Fragment) Length = 776 Score = 29.3 bits (64), Expect = 9.6 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +1 Query: 346 ILNCHQ*TGLPLVSRKHVAILGLEGTRLRKQSTYFHTKSAGLKALVGLSELFLRKVIHGL 525 + N TG+ L S V + +EGT+ +H KS + VGL +L ++ + + + Sbjct: 534 VFNLGDQTGVLLKSLAGVPVASIEGTK-------YHLKSGHVTCEVGLEKLKMKGLTYTV 586 Query: 526 CIET 537 C +T Sbjct: 587 CDKT 590
>HPS6_HUMAN (Q86YV9) Hermansky-Pudlak syndrome 6 protein (Ruby-eye protein| homolog) (Ru) Length = 775 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/80 (30%), Positives = 39/80 (48%) Frame = +1 Query: 370 GLPLVSRKHVAILGLEGTRLRKQSTYFHTKSAGLKALVGLSELFLRKVIHGLCIETGLLI 549 GLPL R+ +A+LG EGTR S KA++ ++K ++ GL + Sbjct: 601 GLPLY-RRALAVLGEEGTRPEALELELLLSSGRPKAVLQAVGQLVQKEQWDRALDAGLAL 659 Query: 550 GTSLHLMM*YINTRLWKLLM 609 G S L + + ++KLL+ Sbjct: 660 GPSSPL----LRSEIFKLLL 675
>PP2CL_MOUSE (Q8BHN0) Protein phosphatase 2C isoform epsilon (EC 3.1.3.16)| (PP2C-epsilon) (Protein phosphatase 1L) (Protein phosphatase 1-like) Length = 360 Score = 29.3 bits (64), Expect = 9.6 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = +3 Query: 153 VSIDVPDPDFHDFDKDRTERAFY---SDQVWATYDSEDGM 263 +++ +PDPD FD D+ + F SD +W + +E+ + Sbjct: 275 LNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314
>PP2CL_HUMAN (Q5SGD2) Protein phosphatase 2C isoform epsilon (EC 3.1.3.16)| (PP2C-epsilon) (Protein phosphatase 1L) (Protein phosphatase 1-like) Length = 360 Score = 29.3 bits (64), Expect = 9.6 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = +3 Query: 153 VSIDVPDPDFHDFDKDRTERAFY---SDQVWATYDSEDGM 263 +++ +PDPD FD D+ + F SD +W + +E+ + Sbjct: 275 LNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314
>IDGF5_DROME (Q8T0R7) Chitinase-like protein Idgf5 precursor (Imaginal disk| growth factor protein 5) Length = 444 Score = 29.3 bits (64), Expect = 9.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 120 DEKNPEQKRVPVSIDVPDPDFHDFDKDRTERAFYSDQVWATYDSEDGMPRLYAMV 284 D + PE R P D+P P + +D+D + Y Q W SE + +L+ V Sbjct: 251 DFQTPE--RDPKVADLPTPLYAMYDRDPSHNVQYQVQYWMNQTSEISVHKLHVGV 303
>PDR8_YEAST (Q06149) Transcription factor PDR8 (Pleiotropic drug resistance| protein 8) Length = 701 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = -3 Query: 349 ILDLELRKLMRILKGLIERTFCTIAYRRGIPSSLSYVAHTWSL*KALSVRSLSKS 185 +LDL+ + G++ + C Y + IPSS+S+ HT LS SLS S Sbjct: 228 LLDLQGNAKDKYNLGIVLQILCLGYYNQDIPSSVSHFLHT------LSAASLSSS 276
>POLG_LANVT (P29837) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 9.6 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +1 Query: 346 ILNCHQ*TGLPLVSRKHVAILGLEGTRLRKQSTYFHTKSAGLKALVGLSELFLRKVIHGL 525 + N TG+ L S V + +EGT+ +H KS + VGL +L ++ + + + Sbjct: 534 VFNLGDQTGVLLKSLAGVPVASIEGTK-------YHLKSGHVTCEVGLEKLKMKGLTYTV 586 Query: 526 CIET 537 C +T Sbjct: 587 CDKT 590 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,318,896 Number of Sequences: 219361 Number of extensions: 2130956 Number of successful extensions: 6246 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6024 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6244 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
