| Clone Name | bags6a05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF346003.1|AF346003 Lolium perenne malate dehydrogenase mRNA, partial cds Length = 587 Score = 281 bits (142), Expect = 1e-72 Identities = 212/234 (90%), Gaps = 1/234 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 112 cacatccgtg-attgggttctcggaacccctgagggaacatttgtttccatgggtgtgta 170 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 || ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | Sbjct: 171 ttctgatggttcatacggtgtgcctgctgggcttatctactccttcccagtaacttgctg 230 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 ||||||||| |||||||||||||||||||||||||| || |||||||| || |||||||| Sbjct: 231 cggtggtgaatggacaattgttcaagggctcccgatcgacgagttctcaagaaagaagat 290 Query: 228 ggatgcgaccgcccaggagctgtcggaggagaaggcgctggcttactcatgcct 281 |||||| || ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 291 ggatgccacagcccaggagctctcggaggagaaggctctcgcctactcgtgcct 344 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 gctctgatgttttgaataaaag 334 |||||||||||||||||||||| Sbjct: 375 gctctgatgttttgaataaaag 396 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 atgtgatcacaagctgagctggcagcag 40 ||||| |||||||| ||||||||||||| Sbjct: 116 atgtggtcacaagcagagctggcagcag 89
>gb|BT016453.1| Zea mays clone Contig286 mRNA sequence Length = 1354 Score = 250 bits (126), Expect = 4e-63 Identities = 204/230 (88%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 858 tgggttcttggaacacctgagggtacatttgtttccatgggtgtgtactctgatggttca 917 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 |||||||| ||| |||| || || || || ||||||||||| ||||| |||||||| ||| Sbjct: 918 tacggtgttccttctggactcatttattcattcccagtaacatgcagtggtggtgaatgg 977 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 | ||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||| Sbjct: 978 aaaatcgttcaaggcctcccgattgatgagttctcaaggaagaagatggatgccactgcc 1037 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgccttgagtaaat 290 || |||||| ||||||||||| |||| |||||||||||||| |||||||| Sbjct: 1038 caagagctgacggaggagaagacgcttgcttactcatgcctcgagtaaat 1087
>gb|AF379609.1|AF379609 Zea mays malate dehydrogenase mRNA, partial cds Length = 529 Score = 250 bits (126), Expect = 4e-63 Identities = 204/230 (88%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 106 tgggttcttggaacacctgagggtacatttgtttccatgggtgtgtactctgatggttca 165 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 |||||||| ||| |||| || || || || ||||||||||| ||||| |||||||| ||| Sbjct: 166 tacggtgttccttctggactcatttattcattcccagtaacatgcagtggtggtgaatgg 225 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 | ||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||| Sbjct: 226 aaaatcgttcaaggcctcccgattgatgagttctcaaggaagaagatggatgccactgcc 285 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgccttgagtaaat 290 || |||||| ||||||||||| |||| |||||||||||||| |||||||| Sbjct: 286 caagagctgacggaggagaagacgcttgcttactcatgcctcgagtaaat 335
>gb|AY109362.1| Zea mays CL1892_2 mRNA sequence Length = 943 Score = 250 bits (126), Expect = 4e-63 Identities = 204/230 (88%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 687 tgggttcttggaacacctgagggtacatttgtttccatgggtgtgtactctgatggttca 746 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 |||||||| ||| |||| || || || || ||||||||||| ||||| |||||||| ||| Sbjct: 747 tacggtgttccttctggactcatttattcattcccagtaacatgcagtggtggtgaatgg 806 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 | ||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||| Sbjct: 807 aaaatcgttcaaggcctcccgattgatgagttctcaaggaagaagatggatgccactgcc 866 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgccttgagtaaat 290 || |||||| ||||||||||| |||| |||||||||||||| |||||||| Sbjct: 867 caagagctgacggaggagaagacgcttgcttactcatgcctcgagtaaat 916
>gb|AF007581.1|AF007581 Zea mays cytoplasmic malate dehydrogenase mRNA, complete cds Length = 1275 Score = 250 bits (126), Expect = 4e-63 Identities = 204/230 (88%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 849 tgggttcttggaacacctgagggtacatttgtttccatgggtgtgtactctgatggttca 908 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 |||||||| ||| |||| || || || || ||||||||||| ||||| |||||||| ||| Sbjct: 909 tacggtgttccttctggactcatttattcattcccagtaacatgcagtggtggtgaatgg 968 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 | ||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||| Sbjct: 969 aaaatcgttcaaggcctcccgattgatgagttctcaaggaagaagatggatgccactgcc 1028 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgccttgagtaaat 290 || |||||| ||||||||||| |||| |||||||||||||| |||||||| Sbjct: 1029 caagagctgacggaggagaagacgcttgcttactcatgcctcgagtaaat 1078
>ref|NM_197014.1| Oryza sativa (japonica cultivar-group) cytoplasmic malate dehydrogenase (OSJNBa0055P24.3), mRNA Length = 1381 Score = 244 bits (123), Expect = 2e-61 Identities = 198/223 (88%) Strand = Plus / Plus Query: 59 actgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggtt 118 |||||||||| || || ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 868 actgggttcttggcactcctgagggaacatttgtctccatgggtgtgtactctgatggtt 927 Query: 119 catacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgatt 178 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| || | Sbjct: 928 cgtatggtgtgcctgctggtctgatctactcgttcccagtaacatgcagtggtggcgaat 987 Query: 179 ggacaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccg 238 |||| |||||||| || |||||||| || |||||||| |||||||||||||| ||||| | Sbjct: 988 ggacgattgttcagggtctcccgatcgacgagttctcaaggaagaagatggacgcgactg 1047 Query: 239 cccaggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 1048 cccaggagctgtcggaggagaagacgctcgcttactcatgcct 1090
>dbj|AK066396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064D20, full insert sequence Length = 1392 Score = 244 bits (123), Expect = 2e-61 Identities = 198/223 (88%) Strand = Plus / Plus Query: 59 actgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggtt 118 |||||||||| || || ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 879 actgggttcttggcactcctgagggaacatttgtctccatgggtgtgtactctgatggtt 938 Query: 119 catacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgatt 178 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| || | Sbjct: 939 cgtatggtgtgcctgctggtctgatctactcgttcccagtaacatgcagtggtggcgaat 998 Query: 179 ggacaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccg 238 |||| |||||||| || |||||||| || |||||||| |||||||||||||| ||||| | Sbjct: 999 ggacgattgttcagggtctcccgatcgacgagttctcaaggaagaagatggacgcgactg 1058 Query: 239 cccaggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 1059 cccaggagctgtcggaggagaagacgctcgcttactcatgcct 1101
>dbj|AK104691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G07, full insert sequence Length = 1326 Score = 236 bits (119), Expect = 6e-59 Identities = 197/223 (88%) Strand = Plus / Plus Query: 59 actgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggtt 118 |||||||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct: 874 actgggttcttggcactcctgagggaacatttgtctccatgggtgtgtactctgatggct 933 Query: 119 catacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgatt 178 | || ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| || | Sbjct: 934 cgtatggtgtgcctgctggtctgatctactcgttcccagtaacatgcagtggtggcgaat 993 Query: 179 ggacaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccg 238 |||| |||||||| || |||||||| || |||||||| |||||||||||||| ||||| | Sbjct: 994 ggacgattgttcagggtctcccgatcgacgagttctcaaggaagaagatggacgcgactg 1053 Query: 239 cccaggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 1054 cccaggagctgtcggaggagaagacgctcgcttactcatgcct 1096
>gb|AF353203.1| Oryza sativa cytoplasmic malate dehydrogenase mRNA, complete cds Length = 1371 Score = 236 bits (119), Expect = 6e-59 Identities = 197/223 (88%) Strand = Plus / Plus Query: 59 actgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggtt 118 |||||||||| || || ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 859 actgggttcttggcactcctgagggaacatttgtctccatgggtgtgtactctgatggtt 918 Query: 119 catacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgatt 178 | || ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || | Sbjct: 919 cgtatggtgtgcctgctggtctgatctactcgttcccggtaacatgcagtggtggcgaat 978 Query: 179 ggacaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccg 238 |||| |||||||| || |||||||| || |||||||| |||||||||||||| ||||| | Sbjct: 979 ggacgattgttcagggtctcccgatcgacgagttctcaaggaagaagatggacgcgactg 1038 Query: 239 cccaggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 1039 cccaggagctgtcggaggagaagacgctcgcttactcatgcct 1081
>gb|DQ083217.1| Oryza sativa (indica cultivar-group) clone 8S3C18 mRNA sequence Length = 360 Score = 188 bits (95), Expect = 1e-44 Identities = 155/175 (88%) Strand = Plus / Plus Query: 107 actcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgca 166 |||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 1 actctgatggttcgtatggtgtgcctgctggtctgatctactcgttcccagtaacatgca 60 Query: 167 gcggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaaga 226 | ||||| || ||||| |||||||| || |||||||| || |||||||| |||||||||| Sbjct: 61 gtggtggcgaatggacgattgttcagggtctcccgatcgacgagttctcaaggaagaaga 120 Query: 227 tggatgcgaccgcccaggagctgtcggaggagaaggcgctggcttactcatgcct 281 |||| ||||| |||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 121 tggacgcgactgcccaggagctgtcggaggagaagacgctcgcttactcatgcct 175
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 80 agggaacatttgtttccatgggtgtttactcggatggttcatacggtgtccctgctggtc 139 ||||||||||||| ||||||||||| ||||| |||||||| || ||||| |||||||||| Sbjct: 17402181 agggaacatttgtctccatgggtgtgtactctgatggttcgtatggtgtgcctgctggtc 17402240 Query: 140 ttatctactccttcccagtaacgtgcagcggtggtgattggacaattgttca 191 | |||||||| ||||||||||| ||||| ||||| || ||||| |||||||| Sbjct: 17402241 tgatctactcgttcccagtaacatgcagtggtggcgaatggacgattgttca 17402292 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 196 ctcccgattgatgagttctcgaggaagaagatggatgcgaccgcccaggagctgtcggag 255 |||||||| || |||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 17402423 ctcccgatcgacgagttctcaaggaagaagatggacgcgactgcccaggagctgtcggag 17402482 Query: 256 gagaaggcgctggcttactcatgcct 281 |||||| |||| |||||||||||||| Sbjct: 17402483 gagaagacgctcgcttactcatgcct 17402508
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 80 agggaacatttgtttccatgggtgtttactcggatggttcatacggtgtccctgctggtc 139 ||||||||||||| ||||||||||| ||||| |||||||| || ||||| |||||||||| Sbjct: 31176 agggaacatttgtctccatgggtgtgtactctgatggttcgtatggtgtgcctgctggtc 31235 Query: 140 ttatctactccttcccagtaacgtgcagcggtggtgattggacaattgttca 191 | |||||||| ||||||||||| ||||| ||||| || ||||| |||||||| Sbjct: 31236 tgatctactcgttcccagtaacatgcagtggtggcgaatggacgattgttca 31287 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 196 ctcccgattgatgagttctcgaggaagaagatggatgcgaccgcccaggagctgtcggag 255 |||||||| || |||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 31418 ctcccgatcgacgagttctcaaggaagaagatggacgcgactgcccaggagctgtcggag 31477 Query: 256 gagaaggcgctggcttactcatgcct 281 |||||| |||| |||||||||||||| Sbjct: 31478 gagaagacgctcgcttactcatgcct 31503
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 80 agggaacatttgtttccatgggtgtttactcggatggttcatacggtgtccctgctggtc 139 ||||||||||||| ||||||||||| ||||| |||||||| || ||||| |||||||||| Sbjct: 17411221 agggaacatttgtctccatgggtgtgtactctgatggttcgtatggtgtgcctgctggtc 17411280 Query: 140 ttatctactccttcccagtaacgtgcagcggtggtgattggacaattgttca 191 | |||||||| ||||||||||| ||||| ||||| || ||||| |||||||| Sbjct: 17411281 tgatctactcgttcccagtaacatgcagtggtggcgaatggacgattgttca 17411332 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 196 ctcccgattgatgagttctcgaggaagaagatggatgcgaccgcccaggagctgtcggag 255 |||||||| || |||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 17411463 ctcccgatcgacgagttctcaaggaagaagatggacgcgactgcccaggagctgtcggag 17411522 Query: 256 gagaaggcgctggcttactcatgcct 281 |||||| |||| |||||||||||||| Sbjct: 17411523 gagaagacgctcgcttactcatgcct 17411548
>ref|NM_123699.2| Arabidopsis thaliana malate dehydrogenase/ oxidoreductase AT5G43330 mRNA, complete cds Length = 1308 Score = 97.6 bits (49), Expect = 3e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||| | ||||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct: 891 tgggttgttggaacacctgagggcacatttgtttcaatgggagtatactcagatggatcc 950 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| ||| || ||||| ||||||||||||||||| ||||| ||| | ||| || ||| Sbjct: 951 tacaatgttccagctggacttatctactccttccccgtaacctgccgtaatggagagtgg 1010 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 || ||||||||||| | ||||||||||| |||||||||||||||||| ||| || Sbjct: 1011 accattgttcaaggtttaccgattgatgacgcatcgaggaagaagatggatttgacagca 1070 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||| || ||| ||||||| || |||||||||||||| Sbjct: 1071 gaggagttgaaggaagagaaggacctcgcttactcatgcct 1111
>gb|AY091220.1| Arabidopsis thaliana putative cytosolic malate dehydrogenase (At5g43330) mRNA, complete cds Length = 1030 Score = 97.6 bits (49), Expect = 3e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||| | ||||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct: 772 tgggttgttggaacacctgagggcacatttgtttcaatgggagtatactcagatggatcc 831 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| ||| || ||||| ||||||||||||||||| ||||| ||| | ||| || ||| Sbjct: 832 tacaatgttccagctggacttatctactccttccccgtaacctgccgtaatggagagtgg 891 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 || ||||||||||| | ||||||||||| |||||||||||||||||| ||| || Sbjct: 892 accattgttcaaggtttaccgattgatgacgcatcgaggaagaagatggatttgacagca 951 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||| || ||| ||||||| || |||||||||||||| Sbjct: 952 gaggagttgaaggaagagaaggacctcgcttactcatgcct 992
>gb|AY072137.1| Arabidopsis thaliana putative cytosolic malate dehydrogenase (At5g43330) mRNA, complete cds Length = 1198 Score = 97.6 bits (49), Expect = 3e-17 Identities = 178/221 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||| | ||||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct: 845 tgggttgttggaacacctgagggcacatttgtttcaatgggagtatactcagatggatcc 904 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| ||| || ||||| ||||||||||||||||| ||||| ||| | ||| || ||| Sbjct: 905 tacaatgttccagctggacttatctactccttccccgtaacctgccgtaatggagagtgg 964 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 || ||||||||||| | ||||||||||| |||||||||||||||||| ||| || Sbjct: 965 accattgttcaaggtttaccgattgatgacgcatcgaggaagaagatggatttgacagca 1024 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||| || ||| ||||||| || |||||||||||||| Sbjct: 1025 gaggagttgaaggaagagaaggacctcgcttactcatgcct 1065
>gb|DQ225182.1| Lycopersicon chilense malate dehydrogenase mRNA, complete cds Length = 1005 Score = 89.7 bits (45), Expect = 8e-15 Identities = 180/225 (80%) Strand = Plus / Plus Query: 59 actgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggtt 118 ||||||| || ||||| || |||||||| |||||||| |||||||||||||| ||||| | Sbjct: 776 actgggtccttggaactccagagggaacttttgtttctatgggtgtttactctgatgggt 835 Query: 119 catacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgatt 178 ||||| |||||| |||| ||||| || ||||||||||| || |||| ||| || | Sbjct: 836 catacaatgtcccatctgggcttatttattccttcccagttacatgcaaaaatggagaat 895 Query: 179 ggacaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccg 238 || | ||||||||||| || || ||||| |||||||| || |||||| |||| ||| | Sbjct: 896 ggtccattgttcaaggtcttccaattgacgagttctcaagaaagaagttggacttgacag 955 Query: 239 cccaggagctgtcggaggagaaggcgctggcttactcatgccttg 283 || |||| || || ||||| || || |||||||||| ||||||| Sbjct: 956 ccgaggaactatcagaggaaaaagcattggcttactcctgccttg 1000
>gb|AY087986.1| Arabidopsis thaliana clone 40174 mRNA, complete sequence Length = 1239 Score = 89.7 bits (45), Expect = 8e-15 Identities = 177/221 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||| | ||||| || ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct: 845 tgggttgttggaacacccgagggcacatttgtttcaatgggagtatactcagatggatcc 904 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| ||| || ||||| ||||||||||||||||| ||||| ||| | ||| || ||| Sbjct: 905 tacaatgttccagctggacttatctactccttccccgtaacctgccgtaatggagagtgg 964 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 || ||||||||||| | ||||||||||| |||||||||||||||||| ||| || Sbjct: 965 accattgttcaaggtttaccgattgatgacgcatcgaggaagaagatggatttgacagca 1024 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgcct 281 ||||| || ||| ||||||| || |||||||||||||| Sbjct: 1025 gaggagttgaaggaagagaaggacctcgcttactcatgcct 1065
>emb|AM040268.1| Capsicum chinense partial mRNA for cytosolic malate dehydrogenase (mdh gene) Length = 773 Score = 83.8 bits (42), Expect = 5e-13 Identities = 177/222 (79%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 ||||| || ||||| || ||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 325 tgggtccttggaactccagagggtacttttgtttctatgggtgtttactctgatgggtca 384 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| |||||| ||||| || || || ||||||||||| || |||| ||| || ||| Sbjct: 385 tacaatgtcccagctgggctcatttattccttcccagttacatgcaaaaatggagaatgg 444 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgcc 240 | ||||||||||| || || ||||| |||||||| || |||||| |||| ||| || Sbjct: 445 tccattgttcaaggtcttccaattgacgagttctcaagaaagaagttggacttgacagct 504 Query: 241 caggagctgtcggaggagaaggcgctggcttactcatgcctt 282 ||||||| |||||||| || || |||||||||| |||||| Sbjct: 505 gaggagctatcggaggaaaaagcattggcttactcctgcctt 546
>emb|AJ299059.1|CAR299059 Cicer arietinum mRNA for cytosolic malate dehydrogenase (ORF1), clone CanCMDH Length = 1399 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 |||||||| ||||| |||||||| || |||||||| ||||| || || || || |||||| Sbjct: 838 tgggttcttggaactcctgagggcacctttgtttcaatgggagtgtattctgacggttca 897 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| ||| || ||||| || ||||| || ||||| || || || |||||| || ||| Sbjct: 898 tacaatgtacccgctggactgatctattcattccctgttacctgtgccggtggggaatgg 957 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggat 231 | |||||||||||| || |||| ||||||||||| ||||||||| ||||| Sbjct: 958 aaaattgttcaaggactttcgatcgatgagttctcaaggaagaagttggat 1008
>emb|AJ299256.1|NTA299256 Nicotiana tabacum mRNA for malate dehydrogenase (md1 gene) Length = 1328 Score = 75.8 bits (38), Expect = 1e-10 Identities = 137/170 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 ||||| || ||||| || |||||||| | ||||| |||||||||||||| ||||| ||| Sbjct: 827 tgggtccttggaactccagagggaacttgggtttctatgggtgtttactctgatgggtca 886 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| |||||| ||||| ||||| || ||||||||||| | |||| ||| || ||| Sbjct: 887 tacaatgtcccagctgggcttatttattccttcccagttgcatgcaaaaatggagaatgg 946 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatgga 230 | ||||||||||| || || |||||||||||||| || |||||| |||| Sbjct: 947 tctattgttcaaggtcttccaattgatgagttctcaagaaagaagttgga 996
>gb|DQ294258.1| Solanum tuberosum clone 093D06 malate dehydrogenase-like protein mRNA, complete cds Length = 1220 Score = 73.8 bits (37), Expect = 5e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 59 actgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggtt 118 ||||||| || ||||| || ||||| || |||||||| |||||||||||||| ||||| | Sbjct: 806 actgggtccttggaactccagagggcacttttgtttctatgggtgtttactctgatgggt 865 Query: 119 catacggtgtccctgctggtcttatctactccttccc 155 ||||| |||||| ||||| ||||| || |||||||| Sbjct: 866 catacaatgtcccagctgggcttatttattccttccc 902
>gb|AF367442.1| Prunus persica clone Mdh1 NAD-dependent malate dehydrogenase (mdh1) mRNA, complete cds Length = 1491 Score = 69.9 bits (35), Expect = 8e-09 Identities = 143/179 (79%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 ||||| || |||||||| ||||| || | |||||||||||||| ||||| ||||| ||| Sbjct: 772 tgggtacttggaacccccgagggcacctgggtttccatgggtgtgtactctgatggctca 831 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaacgtgcagcggtggtgattgg 180 ||| ||| ||| ||||||| || ||||| |||||||| || ||| ||| || ||| Sbjct: 832 tacaatgttccttctggtctcatttactcattcccagtcacttgccaaaatggggagtgg 891 Query: 181 acaattgttcaagggctcccgattgatgagttctcgaggaagaagatggatgcgaccgc 239 | ||||||||||||||| | ||||| || ||||| ||||||||| |||| || ||||| Sbjct: 892 aagattgttcaagggctctctattgacgaattctctaggaagaagttggacgcaaccgc 950 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 atgtgatcacaagctgagctggcagcag 40 |||||||||||||| ||||| ||||||| Sbjct: 764 atgtgatcacaagcagagctagcagcag 737
>gb|DQ167567.1| Zea mays clone MCI21 mRNA sequence Length = 282 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 238 gcccaggagctgtcggaggagaaggcgctggcttactcatgccttgagtaaat 290 ||||| |||||| ||||||||||| |||| |||||||||||||| |||||||| Sbjct: 8 gcccaagagctgacggaggagaagacgcttgcttactcatgcctcgagtaaat 60
>ref|NM_100321.2| Arabidopsis thaliana malate dehydrogenase/ oxidoreductase AT1G04410 mRNA, complete cds Length = 1484 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 905 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 963 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 964 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 1023 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 1024 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 1083 Query: 228 ggat 231 |||| Sbjct: 1084 ggat 1087
>gb|AY133655.1| Arabidopsis thaliana At1g04410/F19P19_13 mRNA, complete cds Length = 999 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 760 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 818 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 819 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 878 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 879 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 938 Query: 228 ggat 231 |||| Sbjct: 939 ggat 942
>gb|AY081563.1| Arabidopsis thaliana unknown protein (At1g04410) mRNA, complete cds Length = 1223 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 760 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 818 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 819 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 878 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 879 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 938 Query: 228 ggat 231 |||| Sbjct: 939 ggat 942
>gb|AY065134.1| Arabidopsis thaliana unknown protein (At1g04410; F19P19.13) mRNA, complete cds Length = 1314 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 846 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 904 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 905 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 964 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 965 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 1024 Query: 228 ggat 231 |||| Sbjct: 1025 ggat 1028
>gb|AY050374.1| Arabidopsis thaliana At1g04410/F19P19_13 mRNA, complete cds Length = 1309 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 842 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 900 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 901 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 960 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 961 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 1020 Query: 228 ggat 231 |||| Sbjct: 1021 ggat 1024
>emb|BX815185.1|CNS0ACZH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 541 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 70 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 128 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 129 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 188 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 189 caatggagagtggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 248 Query: 228 ggat 231 |||| Sbjct: 249 ggat 252
>emb|BX815710.1|CNS0ACSG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS87ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 600 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 135 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 193 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 194 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 253 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 254 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 313 Query: 228 ggat 231 |||| Sbjct: 314 ggat 317
>gb|AY088023.1| Arabidopsis thaliana clone 40467 mRNA, complete sequence Length = 1351 Score = 63.9 bits (32), Expect = 5e-07 Identities = 147/184 (79%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| ||||||| || ||||| || ||||| || || ||||||||||| || || Sbjct: 882 cacatccgtg-actgggtccttggaactccagagggtacgttcgtttccatgggagtata 940 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttcccagtaacgtgcag 167 ||| ||||| || ||| | || || | || ||||||||||||||||| ||||| || | Sbjct: 941 ctccgatggctcttacagcgttccatcaggacttatctactccttccctgtaacttgtcg 1000 Query: 168 cggtggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagat 227 | ||| || |||| ||||| ||||| || ||||||||||| | || ||||||||||| Sbjct: 1001 caatggagactggagtattgtccaaggccttccgattgatgaagtatcaaggaagaagat 1060 Query: 228 ggat 231 |||| Sbjct: 1061 ggat 1064
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 61.9 bits (31), Expect = 2e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 80 agggaacatttgtttccatgggtgtttactcggatggttcatacggtgtccctgctggtc 139 |||| ||||||||||| ||||| || ||||| ||||| || ||| ||| || ||||| | Sbjct: 7150 agggcacatttgtttcaatgggagtatactcagatggatcctacaatgttccagctggac 7209 Query: 140 ttatctactccttcccagtaacgtgcagcggtggtgattggacaattgttcaagg 194 |||||||||||||||| ||||| ||| | ||| || ||||| ||||||||||| Sbjct: 7210 ttatctactccttccccgtaacctgccgtaatggagagtggaccattgttcaagg 7264 Score = 40.1 bits (20), Expect = 6.8 Identities = 56/68 (82%) Strand = Plus / Plus Query: 214 tcgaggaagaagatggatgcgaccgcccaggagctgtcggaggagaaggcgctggcttac 273 |||||||||||||||||| ||| || ||||| || ||| ||||||| || |||||| Sbjct: 7477 tcgaggaagaagatggatttgacagcagaggagttgaaggaagagaaggacctcgcttac 7536 Query: 274 tcatgcct 281 |||||||| Sbjct: 7537 tcatgcct 7544
>gb|AY236152.1| Triticum aestivum cytosolic malate dehydrogenase mRNA, partial cds Length = 683 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 13 atgtgatcacaagctgagctggcagcag 40 |||||||||||||||||||||||||||| Sbjct: 677 atgtgatcacaagctgagctggcagcag 650
>emb|AJ251083.1|BVU251083 Beta vulgaris mRNA for putative malate dehydrogenase (nr1 gene) Length = 999 Score = 56.0 bits (28), Expect = 1e-04 Identities = 89/108 (82%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 48 cacatccgtgnactgggttctgggaacccctgagggaacatttgtttccatgggtgttta 107 |||||||||| | ||||| || |||||||| |||||||| | ||||| |||||||| || Sbjct: 760 cacatccgtg-attgggtgcttggaaccccagagggaacttgggtttctatgggtgtgta 818 Query: 108 ctcggatggttcatacggtgtccctgctggtcttatctactccttccc 155 ||| ||||| |||||| || || ||||| |||||||||||||||| Sbjct: 819 ctctgatggctcatacaacgtaccagctggaattatctactccttccc 866
>emb|AJ843126.1| Plantago major mRNA for malate dehydrogenase (mdh1 gene) Length = 1353 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 91 gtttccatgggtgtttactcggatggttcatacggtgtccctgctggtcttatctactcc 150 |||||||||||||| ||||| ||||| || ||| ||| || ||||| | || ||||| Sbjct: 865 gtttccatgggtgtatactctgatggctcgtacaatgtaccagctggattaatttactca 924 Query: 151 ttcccagtaacgtgcagcggtggtgattggacaattgttcaagggctcccgattgatgag 210 |||||||| || |||| ||| || ||| | ||||||||||| || || ||||||||| Sbjct: 925 ttcccagtgacttgcaagaatggagaatggtcgattgttcaaggacttcccattgatgag 984 Query: 211 ttctcgaggaagaagatggat 231 ||||| ||||| ||| ||||| Sbjct: 985 ttctcaaggaaaaagttggat 1005
>gb|AC121571.4| Mus musculus BAC clone RP23-231J6 from 3, complete sequence Length = 195006 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 315 tctgatgttttgaataaaagaaac 338 |||||||||||||||||||||||| Sbjct: 131163 tctgatgttttgaataaaagaaac 131186
>gb|AF020272.1|AF020272 Medicago sativa cytosolic malate dehydrogenase (cmdh) mRNA, complete cds Length = 1397 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Plus Query: 171 tggtgattggacaattgttcaagggctcccgattgatgagttctcgaggaagaagatgga 230 |||||| |||| ||| |||||||| || | |||||||||||||| ||||||||| |||| Sbjct: 943 tggtgaatggaaaatagttcaaggactttcaattgatgagttctcaaggaagaagttgga 1002
>gb|AY433086.1| Aedes aegypti ASAP ID: 35357 unknown mRNA sequence Length = 482 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 436 ccttttacctgaacatttgctggaag 461 |||||| ||||||||||||||||||| Sbjct: 181 cctttttcctgaacatttgctggaag 156
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 tcacaagctgagctggcagca 39 ||||||||||||||||||||| Sbjct: 593932 tcacaagctgagctggcagca 593952
>gb|AC112682.12| Mus musculus chromosome 6, clone RP23-332K10, complete sequence Length = 206903 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 gaagagcagttgatgctctga 319 ||||||||||||||||||||| Sbjct: 126538 gaagagcagttgatgctctga 126558
>gb|AY496910.1| Glycine max cytosolic malate dehydrogenase mRNA, complete cds Length = 1312 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 253 gaggagaaggcgctggcttactcatgcct 281 ||||||||||| |||||||||||||||| Sbjct: 1016 gaggagaaggcattggcttactcatgcct 1044
>emb|CR954247.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome II, complete sequence Length = 635328 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 ttactcatgccttgagtaaat 290 ||||||||||||||||||||| Sbjct: 505057 ttactcatgccttgagtaaat 505077
>ref|XM_572644.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI02140) partial mRNA Length = 6132 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 tcacaagctgagctggcagca 39 ||||||||||||||||||||| Sbjct: 3427 tcacaagctgagctggcagca 3447
>emb|X96539.1|MCMDH M.crystallinum mRNA for malate dehydrogenase Length = 1273 Score = 42.1 bits (21), Expect = 1.7 Identities = 81/101 (80%) Strand = Plus / Plus Query: 61 tgggttctgggaacccctgagggaacatttgtttccatgggtgtttactcggatggttca 120 ||||| || |||||||| |||||||||| || || |||||||| || || ||||| || Sbjct: 858 tgggtgcttggaaccccagagggaacatgggtatctatgggtgtgtattctgatggctcg 917 Query: 121 tacggtgtccctgctggtcttatctactccttcccagtaac 161 ||| ||| || ||||| | || ||||||||||||||||| Sbjct: 918 tacaatgtgccagctggaatcatttactccttcccagtaac 958
>ref|XM_636241.1| Dictyostelium discoideum malate dehydrogenase (DDB0230187), partial mRNA Length = 1002 Score = 40.1 bits (20), Expect = 6.8 Identities = 56/68 (82%) Strand = Plus / Plus Query: 91 gtttccatgggtgtttactcggatggttcatacggtgtccctgctggtcttatctactcc 150 ||||| ||||||||||| || |||||||| || ||||| || | |||||||||| || Sbjct: 802 gtttcaatgggtgtttattccgatggttcctatggtgttccagaaggtcttatcttttct 861 Query: 151 ttcccagt 158 |||||||| Sbjct: 862 ttcccagt 869
>gb|AE008571.1| Rickettsia conorii str. Malish 7, section 3 of 114 of the complete genome Length = 11078 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aacccctgagggaacatttg 91 |||||||||||||||||||| Sbjct: 1012 aacccctgagggaacatttg 1031
>gb|BC053105.1| Mus musculus phosphorylase kinase beta, mRNA (cDNA clone MGC:62514 IMAGE:6409425), complete cds Length = 4640 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gttttgaataaaagaaacct 340 |||||||||||||||||||| Sbjct: 747 gttttgaataaaagaaacct 728
>ref|NM_199446.1| Mus musculus phosphorylase kinase beta (Phkb), mRNA Length = 4640 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gttttgaataaaagaaacct 340 |||||||||||||||||||| Sbjct: 747 gttttgaataaaagaaacct 728
>gb|BC068420.1| Danio rerio wu:fj56a04, mRNA (cDNA clone IMAGE:6970634), partial cds Length = 3309 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 aggagctgtcggaggagaaggcgc 265 ||||| |||||||||||||||||| Sbjct: 2899 aggaggtgtcggaggagaaggcgc 2876
>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence Length = 257003 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gttttgaataaaagaaacct 340 |||||||||||||||||||| Sbjct: 123851 gttttgaataaaagaaacct 123832
>gb|AC117185.2| Mus musculus BAC clone RP23-37M7 from 8, complete sequence Length = 188791 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gttttgaataaaagaaacct 340 |||||||||||||||||||| Sbjct: 164251 gttttgaataaaagaaacct 164232
>emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chromosome 13 Contains 2 NADH dehydrogenase pseudogenes and a novel gene, complete sequence Length = 172064 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tgatgttttgaataaaagaaacct 340 ||||||||| |||||||||||||| Sbjct: 166816 tgatgtttttaataaaagaaacct 166793
>gb|AC079243.7| Mus musculus strain C57BL6/J chromosome 6 clone RP23-64M7, complete sequence Length = 205508 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 tccacccagaacagctgcac 379 |||||||||||||||||||| Sbjct: 41113 tccacccagaacagctgcac 41094
>gb|AC055713.29| Homo sapiens 12 BAC RP11-486O12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118312 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aacccctgagggaacatttg 91 |||||||||||||||||||| Sbjct: 2654 aacccctgagggaacatttg 2673
>dbj|AK131442.1| Homo sapiens cDNA FLJ16577 fis, clone TESTI2026647, weakly similar to PROBABLE ATP-DEPENDENT RNA HELICASE DDX10 Length = 1848 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aacccctgagggaacatttg 91 |||||||||||||||||||| Sbjct: 27 aacccctgagggaacatttg 8
>gb|AC157099.5| Mus musculus 6 BAC RP24-467O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173237 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 cctgagggaacatttgtttc 95 |||||||||||||||||||| Sbjct: 63410 cctgagggaacatttgtttc 63391
>gb|AC092445.4| Homo sapiens BAC clone RP11-676H8 from 4, complete sequence Length = 173840 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 gatgttttgaataaaagaaacctt 341 |||||||| ||||||||||||||| Sbjct: 120483 gatgttttcaataaaagaaacctt 120506
>dbj|AK165815.1| Mus musculus 13 days embryo brain cDNA, RIKEN full-length enriched library, clone:G630093B19 product:phosphorylase kinase beta, full insert sequence Length = 1015 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gttttgaataaaagaaacct 340 |||||||||||||||||||| Sbjct: 742 gttttgaataaaagaaacct 723
>dbj|AK089493.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730039M10 product:similar to phosphorylase kinase (EC 2.7.1.38) beta chain [Homo sapiens], full insert sequence Length = 1972 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gttttgaataaaagaaacct 340 |||||||||||||||||||| Sbjct: 785 gttttgaataaaagaaacct 766
>gb|AC048340.24| Homo sapiens 12 BAC RP11-469A24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 76354 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aacccctgagggaacatttg 91 |||||||||||||||||||| Sbjct: 8323 aacccctgagggaacatttg 8342
>gb|AC159712.7| Mus musculus BAC RP23-236J3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 221910 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cctgagggaacatttgtttc 95 |||||||||||||||||||| Sbjct: 9987 cctgagggaacatttgtttc 10006
>gb|AC158188.2| Selaginella moellendorffii clone JGIASXY-5I4, complete sequence Length = 37581 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gaggaagaagatggatgcga 235 |||||||||||||||||||| Sbjct: 6123 gaggaagaagatggatgcga 6104
>dbj|AB115700.1| Cryptococcus diffluens DNA, intergenic spacer 1 region Length = 603 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aacgtgcagcggtggtgatt 178 |||||||||||||||||||| Sbjct: 442 aacgtgcagcggtggtgatt 461
>gb|M74695.1|HIVGP120K Human immunodeficiency virus type 1 env gene, partial cds (a11) Length = 396 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 tgctctgatgttttgaataa 331 |||||||||||||||||||| Sbjct: 187 tgctctgatgttttgaataa 206 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,204,601 Number of Sequences: 3902068 Number of extensions: 4204601 Number of successful extensions: 120100 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 119878 Number of HSP's gapped (non-prelim): 193 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)