ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6a04 |
|---|---|
| Clone Library Name | barley_pub |
>OGG1_RAT (O70249) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 345 Score = 78.2 bits (191), Expect = 2e-14 Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Frame = +3 Query: 96 EALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK---YMLPELAGKSLTPKLSI 266 +ALCTLPGVG KVA CI L +LDK QA+PVD HVW++A + + K +P + Sbjct: 238 KALCTLPGVGTKVADCICLMALDKPQAVPVDIHVWQIAHRDYGWQPKTSQTKGPSPLANK 297 Query: 267 VVADAFVTRFGEYAGWAQNVLFIGQLPAKKL 359 + + F +G YAGWAQ VLF L + L Sbjct: 298 ELGNFFRNLWGPYAGWAQAVLFSADLRQQNL 328
>OGG1_MOUSE (O08760) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 345 Score = 77.8 bits (190), Expect = 3e-14 Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Frame = +3 Query: 96 EALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK---YMLPELAGKSLTPKLSI 266 +ALCTLPGVG KVA CI L +LDK QA+PVD HVW++A + + K +P + Sbjct: 238 KALCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYGWHPKTSQAKGPSPLANK 297 Query: 267 VVADAFVTRFGEYAGWAQNVLFIGQL 344 + + F +G YAGWAQ VLF L Sbjct: 298 ELGNFFRNLWGPYAGWAQAVLFSADL 323
>OGG1_DROME (Q9V3I8) N-glycosylase/DNA lyase (dOgg1) [Includes: 8-oxoguanine| DNA glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 343 Score = 76.3 bits (186), Expect = 7e-14 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Frame = +3 Query: 96 EALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATKYMLPELAG-KSLTPKLSIVV 272 E L LPG+G KVA CI L S+ +++PVD H++++A Y LP L G K++T K+ V Sbjct: 239 EELTLLPGIGYKVADCICLMSMGHLESVPVDIHIYRIAQNYYLPHLTGQKNVTKKIYEEV 298 Query: 273 ADAFVTRFGEYAGWAQNVLFIGQL 344 + F G+YAGWAQ +LF L Sbjct: 299 SKHFQKLHGKYAGWAQAILFSADL 322
>OGG1_HUMAN (O15527) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 345 Score = 75.5 bits (184), Expect = 1e-13 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Frame = +3 Query: 96 EALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK---YMLPELAGKSLTPKLSI 266 +ALC LPGVG KVA CI L +LDK QA+PVD H+W +A + + K +P+ + Sbjct: 238 KALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNK 297 Query: 267 VVADAFVTRFGEYAGWAQNVLFIGQL 344 + + F + +G YAGWAQ VLF L Sbjct: 298 ELGNFFRSLWGPYAGWAQAVLFSADL 323
>OGG1_YEAST (P53397) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA| glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 376 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 17/106 (16%) Frame = +3 Query: 66 CVTGXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVA------------ 209 C V E L + GVGPKVA C+ L L + +PVD HV ++A Sbjct: 220 CKDAQYEDVREHLMSYNGVGPKVADCVCLMGLHMDGIVPVDVHVSRIAKRDYQISANKNH 279 Query: 210 -----TKYMLPELAGKSLTPKLSIVVADAFVTRFGEYAGWAQNVLF 332 TKY ++ K + +L + F ++G YAGWAQ VLF Sbjct: 280 LKELRTKYNALPISRKKINLELDHIRLMLF-KKWGSYAGWAQGVLF 324
>NTH1_CAEEL (P54137) Probable endonuclease III homolog (EC 4.2.99.18)| (DNA-(Apurinic or apyrimidinic site) lyase) Length = 259 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = +3 Query: 72 TGXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVAT-----KYMLPELA 236 +G +P ++ LC LPGVGPK+A + + + I VDTHV +++ K PE Sbjct: 100 SGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRLGWIKTSTPEKT 159 Query: 237 GKSL 248 K+L Sbjct: 160 QKAL 163
>OGG1_METTH (O27397) Probable N-glycosylase/DNA lyase [Includes: 8-oxoguanine| DNA glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 312 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = +3 Query: 96 EALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATKYMLPELAGKSLTPKLSIVVA 275 E L L GVGPKVA CI L+ K +A PVD + ++ ++ P G++ + + A Sbjct: 224 ELLLELSGVGPKVADCILLYGFRKTEAFPVDVWIRRI-MNHIHP---GRNFNDRSMVEFA 279 Query: 276 DAFVTRFGEYAGWAQNVLF 332 +GE A + Q LF Sbjct: 280 R---REYGEMADYVQLYLF 295
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 39.7 bits (91), Expect = 0.008 Identities = 21/57 (36%), Positives = 29/57 (50%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATKYMLPELAGKS 245 G +P + L LPGVGPK+A + I VDTHV ++A + + A KS Sbjct: 202 GDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKS 258
>END3_SCHPO (Q09907) Endonuclease III homolog (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 355 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKV 206 G +P +E L TLPGVGPK+ + +K I VD HV ++ Sbjct: 124 GDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVDVHVHRI 167
>NTHL1_MOUSE (O35980) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 300 Score = 37.7 bits (86), Expect = 0.030 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK 215 G +P + L LPGVGPK+A + I VDTHV ++A + Sbjct: 190 GDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR 236
>YBT1_YEAST (P32386) ATP-dependent bile acid permease| Length = 1661 Score = 36.6 bits (83), Expect = 0.066 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = -2 Query: 463 FSLLSMLSYVCISTIFVPRFLLVGFVVSLVTSAATSF-LAGSWPIKR--TFCAQPAYSPN 293 +SL+ LS V + T P+FL V VVS++ F +AGS +KR + P Y Sbjct: 1185 YSLIECLSTVILITFITPQFLSVAIVVSILYYFVGYFYMAGSRELKRFESISRSPIYQHF 1244 Query: 292 LVTNASATTMLSFG 251 T TT+ +FG Sbjct: 1245 SETLVGVTTIRAFG 1258
>END3_BUCBP (Q89AW4) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 215 Score = 32.7 bits (73), Expect = 0.95 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK 215 G +P E L +LPGVG K A I L + K + I VDTHV+++ + Sbjct: 107 GKVPNNREDLESLPGVGRKTANVI-LNVIFKKKTIAVDTHVFRLCNR 152
>END3_BUCAP (Q8KA16) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 209 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = +3 Query: 108 TLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK 215 +LPGVG K A I +KN I VDTHV++VA + Sbjct: 113 SLPGVGRKTANIILNVLFNKN-TIAVDTHVFRVANR 147
>AT10B_HUMAN (O94823) Probable phospholipid-transporting ATPase VB (EC 3.6.3.1)| Length = 1461 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -3 Query: 297 QIWLQMRRRQQCSVLESGSCQLARAT---YTL*QPSRHVCQQE*PDSYQERTEQCRLQLL 127 Q+W+ +Q+ +V + SC+L T YT+ ++ C+ + +E + LQ Sbjct: 910 QLWVLTGDKQETAVNIAHSCRLLNQTDTVYTINTENQETCESILNCALEELKQFRELQKP 969 Query: 126 DQRLAGYKEPQLPPEV 79 D++L G++ P P + Sbjct: 970 DRKLFGFRLPSKTPSI 985
>END3_SYNY3 (P73715) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 219 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK 215 G +P +E L TLPGV K A + + + VDTHV +++ + Sbjct: 111 GEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVKRLSQR 157
>NTG1_YEAST (P31378) DNA base excision repair N-glycosylase 1, mitochondrial| precursor Length = 399 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +3 Query: 81 LPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHV 197 +P I L LPGVGPK+A + K + I VD HV Sbjct: 227 VPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHV 265
>TSGA_BUCBP (Q89A60) Protein tsgA homolog| Length = 388 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Frame = -1 Query: 545 AGNISQHFLSTGFWVIHALNI-AQTFFDIFLTIHALLCLYFNH-----LCPTFPLGRFRG 384 AG +S F+S+ W+ + +N+ Q F LTI A L L F+H F LG G Sbjct: 55 AGILSSIFISS--WITNIINLKTQLIFGFILTIIATLILIFSHNLTYFSISMFMLGIISG 112 Query: 383 VTGNFG 366 +T + G Sbjct: 113 ITMSIG 118
>END3_BUCAI (P57219) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 210 Score = 31.2 bits (69), Expect = 2.8 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = +3 Query: 108 TLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATK 215 +LPGVG K A I L L K + I VDTHV++V + Sbjct: 113 SLPGVGRKTANII-LNILFKKKTIAVDTHVFRVCNR 147
>FUT11_ARATH (Q9LJK1) Glycoprotein 3-alpha-L-fucosyltransferase A (EC 2.4.1.214)| (Core alpha-(1,3)-fucosyltransferase) (Fuc-T C3) (FucTA) (FucT1) (AtFUT11) Length = 501 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 610 IIH*LTKTKKNLPTSS--EDCLEWLETYPSTSFQRDF 506 + H TK+ +L S E C EWLE S ++ RDF Sbjct: 71 LTHFFTKSSSDLKVGSGIEKCQEWLERVDSVTYSRDF 107
>RECR_METCA (Q609A9) Recombination protein recR| Length = 198 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQ 173 G + +IEAL LPGVGPK A + L L +++ Sbjct: 5 GAIAELIEALRCLPGVGPKTAQRMTLHLLQRDR 37
>RECR_PROAC (Q6AB99) Recombination protein recR| Length = 201 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLD 164 G L +I+AL LPG+GPK A IA LD Sbjct: 4 GPLQELIDALSRLPGIGPKGAQRIAFHILD 33
>Y420_METJA (Q57863) Hypothetical protein MJ0420| Length = 380 Score = 30.8 bits (68), Expect = 3.6 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Frame = -2 Query: 481 LRHSLTFSLLSMLSYVCISTIFVPRFLLVGFVVSLVTSAATSFLAGSWPIKRTFCAQPA- 305 + HSL S+ +L + I+ +FV + FV L + +FL I + A P Sbjct: 94 ITHSLFLSIAYLLFILIIAELFVKFYKKKIFVDILFSIGIIAFLL----IVLIYGAIPLF 149 Query: 304 -YSPNLVTNASATTMLSFGVRLLPASSGNIYFVATFQTCVSTG 179 Y + N+ ++S G + +YF+ F V G Sbjct: 150 NYEVRMTINSEPLRLISMGALIYAGIENKVYFIIAFMILVLLG 192
>RECR_VIBF1 (Q5E466) Recombination protein recR| Length = 200 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +3 Query: 72 TGXLPXVIEALCTLPGVGPKVAACIALFSLDKNQ 173 +G L ++E+L LPGVGPK A +A L +N+ Sbjct: 4 SGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNR 37
>END3_MYCTU (P63540) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 245 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATKY 218 G +P ++ L TLPGVG K A I L + I VDTH ++ ++ Sbjct: 113 GEVPATMDKLVTLPGVGRKTANVI-LGNAFGIPGITVDTHFGRLVRRW 159
>END3_MYCBO (P63541) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 245 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVDTHVWKVATKY 218 G +P ++ L TLPGVG K A I L + I VDTH ++ ++ Sbjct: 113 GEVPATMDKLVTLPGVGRKTANVI-LGNAFGIPGITVDTHFGRLVRRW 159
>FRP1_SCHPO (Q04800) Ferric reductase transmembrane component (EC 1.16.1.7)| (Ferric-chelate reductase) Length = 564 Score = 30.4 bits (67), Expect = 4.7 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -1 Query: 614 VNNSLINKDKKEPSNEFRGLP*MAGN-ISQHFLSTGFWVIHALNIAQT----FFDIFLTI 450 V + LI P F GLP AGN + + S +W IH IA F ++F+ + Sbjct: 277 VEDDLIYMKGPRPKKSFFGLPWGAGNHMYINIPSLSYWQIHPFTIASVPSDDFIELFVAV 336 Query: 449 HA 444 A Sbjct: 337 RA 338
>RNFG_BUCBP (Q89AW6) Electron transport complex protein rnfG| Length = 216 Score = 30.4 bits (67), Expect = 4.7 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 9/66 (13%) Frame = -1 Query: 335 NKKNILCPTSILAKSGYKC---------VGDNNAQFWSQALAS*LGQHILCSNLPDMCVN 183 NK+ I C +L G+ + N Q+ Q + + HI+ SNL D + Sbjct: 6 NKRKIFCSALVLGSFGFLAASFVSIIYVITKNKIQYQEQRYKNIIFNHIVPSNLHDNDIQ 65 Query: 182 RNSLIL 165 R+ LIL Sbjct: 66 RSCLIL 71
>RECR_PHOLL (Q7N0P2) Recombination protein recR| Length = 201 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = +3 Query: 81 LPXVIEALCTLPGVGPKVAACIALFSLDKNQA 176 L ++EAL LPGVGPK A +A L +N++ Sbjct: 7 LESLMEALRCLPGVGPKSAQRMAFHLLQRNRS 38
>RECR_BACLD (Q65PJ9) Recombination protein recR| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQAIPVD 188 +I++ LPG+GPK A +A F L + + +D Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLSMKEDVVLD 42
>RECR_BACHK (Q6HPZ0) Recombination protein recR| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK A +A F LD + Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLDMKE 37
>RECR_BACCZ (Q63HE8) Recombination protein recR| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK A +A F LD + Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLDMKE 37
>RECR_BACCR (Q81JB9) Recombination protein recR| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK A +A F LD + Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLDMKE 37
>RECR_BACC1 (Q73FI4) Recombination protein recR| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK A +A F LD + Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLDMKE 37
>RECR_BACAN (Q81W16) Recombination protein recR| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK A +A F LD + Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLDMKE 37
>SPEE_COREF (Q8FMF7) Probable spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 519 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 177 IPVDTHVWKVATKYMLPELAGKSLTPKLSIVVADAFV-TRFGEYAGWAQNVLFI 335 + +D V +VA +LP+ G P+++++ DAF R G G + +F+ Sbjct: 325 VELDPEVIEVANTILLPDNGGAMQDPRVTVITDDAFTWLRAGGDGGQRYDAIFV 378
>RECR_SYNP6 (Q5N5P2) Recombination protein recR| Length = 199 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +3 Query: 72 TGXLPXVIEALCTLPGVGPKVAACIALFSLDKNQA 176 T L +IE L LPGVGPK A +AL + + +A Sbjct: 5 TRPLARLIEHLQKLPGVGPKTAQRLALHLIQRPEA 39
>RECR_STRCO (Q9XAI4) Recombination protein recR| Length = 199 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/38 (50%), Positives = 22/38 (57%) Frame = +3 Query: 75 GXLPXVIEALCTLPGVGPKVAACIALFSLDKNQAIPVD 188 G + +I+ L LPGVGPK A IA L QA PVD Sbjct: 4 GVVQDLIDELGRLPGVGPKSAQRIAFHIL---QAEPVD 38
>RBD2_SCHPO (O74926) Rhomboid protein 2 (EC 3.4.21.-)| Length = 248 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 439 YVCISTIFVPRFLLVGFVVSLVTSAATSFLAGSWPIK 329 Y+ ++TI VP+ +G V T F+ GS P+K Sbjct: 163 YLIMTTILVPKASFIGHASGAVMGYCTPFMLGSIPLK 199
>ADRB3_HUMAN (P13945) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 408 Score = 29.6 bits (65), Expect = 8.0 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = -2 Query: 430 ISTIFVPRFLLVGFVVSL--VTSAATSFLAGSWPIKRTFCAQPAYSPNLVTNASATTMLS 257 ++ +FV V+ L V AAT L G WP+ T C L AS T+ + Sbjct: 71 MTNVFVTSLAAADLVMGLLVVPPAATLALTGHWPLGATGCELWTSVDVLCVTASIETLCA 130 Query: 256 FGV-RLLPASSGNIYFVATFQTCVSTGI 176 V R L ++ Y + C T + Sbjct: 131 LAVDRYLAVTNPLRYGALVTKRCARTAV 158
>RECR_OCEIH (Q8EU58) Recombination protein recR| Length = 198 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK AA +A F L+ + Sbjct: 10 LIDSFSKLPGIGPKTAARLAFFVLNMKE 37
>RECR_LISMO (Q8Y3X7) Recombination protein recR| Length = 198 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK AA +A + LD + Sbjct: 10 LIDSFMKLPGIGPKSAARLAFYVLDMKE 37
>RECR_LISMF (Q71W69) Recombination protein recR| Length = 198 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +I++ LPG+GPK AA +A + LD + Sbjct: 10 LIDSFMKLPGIGPKSAARLAFYVLDMKE 37
>RECR_BACSU (P24277) Recombination protein recR| Length = 198 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQAIPVD 188 +I++ LPG+GPK A +A F L + + +D Sbjct: 10 LIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLD 42
>RECR_BACHD (Q9KGM3) Recombination protein recR| Length = 198 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 90 VIEALCTLPGVGPKVAACIALFSLDKNQ 173 +IE LPG+GPK A+ +A F L+ + Sbjct: 10 LIEGFMRLPGIGPKTASRLAFFVLEMKE 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,679,409 Number of Sequences: 219361 Number of extensions: 2042247 Number of successful extensions: 6075 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 5893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6065 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
