ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5l04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 412 e-112
2gb|AY105329.1| Zea mays PCO071652 mRNA sequence 369 8e-99
3gb|AY105826.1| Zea mays PCO071651 mRNA sequence 270 6e-69
4dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
5ref|XM_464178.1| Oryza sativa (japonica cultivar-group), mRNA 82 3e-12
6dbj|AK119431.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 3e-12
7gb|AF311222.1|AF311222 Saccharum hybrid cultivar C2H2 zinc-finge... 60 1e-05
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
9dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
10dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
11ref|NM_128268.2| Arabidopsis thaliana SE (SERRATE); transcriptio... 58 4e-05
12gb|AY143937.1| Arabidopsis thaliana At2g27100/T20P8.15 mRNA, com... 58 4e-05
13gb|AY142569.1| Arabidopsis thaliana unknown protein (At2g27100) ... 58 4e-05
14gb|AY039915.1| Arabidopsis thaliana unknown protein (At2g27100) ... 58 4e-05
15gb|AF428305.1|AF428305 Arabidopsis thaliana At2g27100/T20P8.15 m... 58 4e-05
16gb|AF311221.1|AF311221 Arabidopsis thaliana C2H2 zinc-finger pro... 58 4e-05
17ref|XM_483342.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-04
18dbj|AK120996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
19dbj|AK107181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
20dbj|AK069175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
21gb|AF311223.1|AF311223 Zea mays C2H2 zinc-finger protein (SE1A) ... 50 0.010
22gb|AC168883.3| Mus musculus 10 BAC RP23-406F5 (Roswell Park Canc... 44 0.60
23gb|AC158621.9| Mus musculus 10 BAC RP23-294J10 (Roswell Park Can... 44 0.60
24emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on ch... 42 2.4
25gb|AC160112.2| Mus musculus BAC clone RP24-80F17 from chromosome... 42 2.4
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.4
27gb|AC124833.1| Homo sapiens BAC clone RP11-324E12 from 7, comple... 40 9.4
28gb|AC005550.1| Homo sapiens PAC clone RP4-620P6 from 7, complete... 40 9.4
29emb|AL359986.15| Human DNA sequence from clone RP11-106M14 on ch... 40 9.4
30emb|AL133462.23| Human DNA sequence from clone RP11-108A16 on ch... 40 9.4
31gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.4
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
34dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
35gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 40 9.4
36dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
37gb|AC016689.4| Homo sapiens BAC clone RP11-81H20 from 2, complet... 40 9.4
38dbj|AP006846.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
39dbj|AB091509.1| Penicillium chrysogenum mRNA for cystein synthas... 40 9.4
40gb|AC012380.1|AC012380 Genomic Sequence For Homo sapiens Clone 1... 40 9.4
41gb|AC006577.2|F15I1 Sequence of BAC F15I1 from Arabidopsis thali... 40 9.4
42emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4,... 40 9.4 
>dbj|AK120947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038B04, full
            insert sequence
          Length = 2541

 Score =  412 bits (208), Expect = e-112
 Identities = 396/459 (86%), Gaps = 6/459 (1%)
 Strand = Plus / Plus

                                                                        
Query: 13   tgctcctgagtttgtttacaagcatttgcggctcaagcatccagagcttgtgttagaagt 72
            |||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  |
Sbjct: 1639 tgctcctgagttcgttcacaagcatttgaggctgaagcatccagagcttgtgttagagtt 1698

                                                                        
Query: 73   tacttcaaaactccgggaggatatttatttcgaaaattacatgaatgaccctaatgcacc 132
             ||||| ||| |||| |||||| | |||||| |||||||||||||||| |||||||||||
Sbjct: 1699 gacttccaaagtccgagaggatctctatttccaaaattacatgaatgatcctaatgcacc 1758

                                                                        
Query: 133  aggtggaacaccagttatgcagcaatctgcagcagacaaatcaaggcggagatctgacaa 192
             |||||||| ||||||||||| || |||||| ||||||||||||| | |||| |||    
Sbjct: 1759 tggtggaactccagttatgcaacagtctgcaccagacaaatcaagacagagacctg---- 1814

                                                                        
Query: 193  tggtatggatagtcgtctgagatatgaccgtggcaatcgcagagaatatgatagggcaga 252
              ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 1815 --gtatggataatcgtctgagatatgaccgtgccaatcgtagagaatatgatagggcaga 1872

                                                                        
Query: 253  taaagatggaggcagacatggtagaggtgatggctctccaagccgtgatggacctgacga 312
             | ||||||| ||||| |||||||||||||| | |||||||| | ||||||  |||| ||
Sbjct: 1873 gagagatggaagcagatatggtagaggtgatcgttctccaagtcttgatggcgctgatga 1932

                                                                        
Query: 313  tcagatgtttgattccttccgtggaagaggctccaatgctcctttttcggctgaattccc 372
            ||||||||||||| | ||||||||  ||||  | ||||||||||||    ||||| | ||
Sbjct: 1933 tcagatgtttgatgctttccgtgggcgaggtccaaatgctccttttgttcctgaacttcc 1992

                                                                        
Query: 373  tgctccaccgatattgatgcctgttcccggtgctggtccattgggaccatttgttcctgc 432
             ||||| || || ||||||||| |||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1993 cgctccgccaattttgatgcctattcctggtgctggtcctttgggtccatttgttcctgc 2052

                                                   
Query: 433  acctccagaaatagccatgcatatgctgagagagcaagg 471
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 acctccagaaatagccatgcatatgctgagagagcaagg 2091



 Score =  109 bits (55), Expect = 1e-20
 Identities = 138/165 (83%), Gaps = 3/165 (1%)
 Strand = Plus / Plus

                                                                        
Query: 500  cctcatggcaactcaggagtgcttggatcgatgatgggcgggggcccaacaccaattata 559
            ||||||| |||| |||||||||||||| | |||||||| ||    ||  | |||||||||
Sbjct: 2123 cctcatgccaacccaggagtgcttggaccaatgatgggtggt---cctgcgccaattata 2179

                                                                        
Query: 560  gccatgccaccatctttccatcgtgatcctcgacgtctgcgaagctataatgatctcgat 619
             ||||||| |||||||| | ||  |||||||| ||| ||||||| || ||||| || |||
Sbjct: 2180 accatgcctccatcttttcgtcaagatcctcgccgtttgcgaagttacaatgaccttgat 2239

                                                         
Query: 620  gcccctgacgaggaagttactgttcttgactacagaagtttgtag 664
            || || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 2240 gctccggacgaggaagttaccgttcttgactacagaagtttgtag 2284
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>gb|AY105329.1| Zea mays PCO071652 mRNA sequence
          Length = 1271

 Score =  369 bits (186), Expect = 8e-99
 Identities = 544/663 (82%), Gaps = 13/663 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    ttttcntgctcctgagtttgtttacaagcatttgcggctcaagcatccagagcttgtgtt 66
            ||||| |||||||||||||||| |||||||||||  ||||||||||||||| ||||| ||
Sbjct: 358  ttttcatgctcctgagtttgttcacaagcatttgaagctcaagcatccagaccttgtatt 417

                                                                        
Query: 67   agaagttacttcaaaactccgggaggatatttatttcgaaaattacatgaatgaccctaa 126
            |||    || |||||| | || |||||| |||||||  |||||||||||||||| |||||
Sbjct: 418  agagtcaacgtcaaaagttcgagaggatctttattttcaaaattacatgaatgatcctaa 477

                                                                        
Query: 127  tgcaccaggtggaacaccagttatgcagcaatctgcagcagacaaatcaaggcggagatc 186
             |||||||||||||| ||||| ||||| || |||||| |||||| |  ||| |||||| |
Sbjct: 478  cgcaccaggtggaaccccagtgatgcaacagtctgcaccagacagaggaagacggagacc 537

                                                                        
Query: 187  tgacaatggtatggatagtcgtctgagatatgaccgtggcaatcgcagagaatatgatag 246
            |  ||      |||| |||||||||| || ||||||||||| |  ||||||  |||||| 
Sbjct: 538  tagca------tggacagtcgtctgaaatttgaccgtggcagtaacagagaccatgataa 591

                                                                        
Query: 247  ggcagataaagatggaggcagacatggtagaggtgatggctctccaagccgtgatggacc 306
             || |||| |||||||| |||  |||||||||||||   |||||||||||||||||| ||
Sbjct: 592  agctgatagagatggagtcaggtatggtagaggtgaccactctccaagccgtgatgggcc 651

                                                                        
Query: 307  tgacgatcagatgtttgattccttccgtggaagaggctccaatgctcctttttcggctga 366
            ||| |||||||||||||||   ||||| ||| |   ||| ||||||||||||   |||||
Sbjct: 652  tgatgatcagatgtttgatggtttccgcggacggccctcgaatgctccttttgttgctga 711

                                                                        
Query: 367  attccctgctccaccgatattgatgcctgttcccggtgctggtccattgggaccatttgt 426
            |||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 712  attcccagctccaccgatattgatgccagtacctggtgctggtcccttgggcccatttgt 771

                                                                        
Query: 427  tcctgcacctccagaaatagccatgcatatgctgagagagcaagg----accttccgcat 482
            ||||||||||||||| ||||| |||||||||||||||||||||||    |||| |  | |
Sbjct: 772  tcctgcacctccagagatagcgatgcatatgctgagagagcaaggggccacctcctcctt 831

                                                                        
Query: 483  tcgaaccaaatggcggacctcatggcaactcaggagtgcttggatcgatgatgggcgggg 542
            | ||||||||||||| ||| ||||||||  | ||| |||||||  | ||||||   || |
Sbjct: 832  ttgaaccaaatggcgcaccacatggcaatgctggaatgcttgggccaatgatg---ggtg 888

                                                                        
Query: 543  gcccaacaccaattatagccatgccaccatctttccatcgtgatcctcgacgtctgcgaa 602
            ||||| |||| |||||||| ||||| |||  |||||  | ||||||||| || ||| |||
Sbjct: 889  gcccagcaccgattatagctatgcctccaaatttccgccatgatcctcgccgcctgagaa 948

                                                                        
Query: 603  gctataatgatctcgatgcccctgacgaggaagttactgttcttgactacagaagtttgt 662
            | ||||| || |||||||| ||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 949  gttataacgacctcgatgctcctgatgaggaagtcactgtccttgactacagaagcttgt 1008

               
Query: 663  agg 665
            |||
Sbjct: 1009 agg 1011
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>gb|AY105826.1| Zea mays PCO071651 mRNA sequence
          Length = 594

 Score =  270 bits (136), Expect = 6e-69
 Identities = 379/459 (82%), Gaps = 7/459 (1%)
 Strand = Plus / Plus

                                                                       
Query: 14  gctcctgagtttgtttacaagcatttgcggctcaagcatccagagcttgtgttagaagtt 73
           ||||||||||||||  ||||||||||| ||||||| |||||||| ||||| || ||   |
Sbjct: 115 gctcctgagtttgtccacaagcatttgaggctcaaacatccagaccttgtattggagtct 174

                                                                       
Query: 74  acttcaaaactccgggaggatatttatttcgaaaattacatgaatgaccctaatgcacca 133
           || |||||| | || |||||| |||||||| |||| |||||||| |||||||||||||||
Sbjct: 175 acgtcaaaagttcgagaggatctttatttccaaaactacatgaaggaccctaatgcacca 234

                                                                       
Query: 134 ggtggaacaccagttatgcagcaatctgcagcagacaaatcaaggcggagatctgacaat 193
           |||||||| ||||| ||||| |  |||||| |||||| |  ||| |||||| ||  ||  
Sbjct: 235 ggtggaaccccagtgatgcaactgtctgcaccagacagaggaagacggagacctagca-- 292

                                                                       
Query: 194 ggtatggatagtcgtctgagatatgaccgtggcaatcgcagagaatatgatagggcagat 253
               |||| |||||||||| || ||||||||||| |  || |||| ||||||  || || 
Sbjct: 293 ----tggacagtcgtctgaaatttgaccgtggcagtaacaaagaacatgataaagctgag 348

                                                                       
Query: 254 aaagatggaggcagacatggtagaggtgatggctctccaagccgtgatggacctgacgat 313
           | | ||||||||||| |||||||||  |||  |||||||||||||||||| ||||| |||
Sbjct: 349 agacatggaggcagatatggtagagacgatcactctccaagccgtgatgggcctgatgat 408

                                                                       
Query: 314 cagatgtttgattccttccgtggaagaggc-tccaatgctcctttttcggctgaattccc 372
           ||||||||||||   |||||||| |  | | || ||||||||||||   |||||||||||
Sbjct: 409 cagatgtttgatggtttccgtgggacggccctctaatgctccttttgttgctgaattccc 468

                                                                       
Query: 373 tgctccaccgatattgatgcctgttcccggtgctggtccattgggaccatttgttcctgc 432
             ||||||||||||||||||| || || |||||||||||  | |||||||||||||||||
Sbjct: 469 ccctccaccgatattgatgccagtacctggtgctggtcccctaggaccatttgttcctgc 528

                                                  
Query: 433 acctccagaaatagccatgcatatgctgagagagcaagg 471
           ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 529 acctccagagatagcgatgcatatgctgagagagcaagg 567
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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0545E05
          Length = 163229

 Score =  167 bits (84), Expect = 6e-38
 Identities = 183/216 (84%)
 Strand = Plus / Minus

                                                                          
Query: 193    tggtatggatagtcgtctgagatatgaccgtggcaatcgcagagaatatgatagggcaga 252
              ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 150121 tggtatggataatcgtctgagatatgaccgtgccaatcgtagagaatatgatagggcaga 150062

                                                                          
Query: 253    taaagatggaggcagacatggtagaggtgatggctctccaagccgtgatggacctgacga 312
               | ||||||| ||||| |||||||||||||| | |||||||| | ||||||  |||| ||
Sbjct: 150061 gagagatggaagcagatatggtagaggtgatcgttctccaagtcttgatggcgctgatga 150002

                                                                          
Query: 313    tcagatgtttgattccttccgtggaagaggctccaatgctcctttttcggctgaattccc 372
              ||||||||||||| | ||||||||  ||||  | ||||||||||||    ||||| | ||
Sbjct: 150001 tcagatgtttgatgctttccgtgggcgaggtccaaatgctccttttgttcctgaacttcc 149942

                                                  
Query: 373    tgctccaccgatattgatgcctgttcccggtgctgg 408
               ||||| || || ||||||||| |||| ||||||||
Sbjct: 149941 cgctccgccaattttgatgcctattcctggtgctgg 149906



 Score =  111 bits (56), Expect = 3e-21
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                          
Query: 408    gtccattgggaccatttgttcctgcacctccagaaatagccatgcatatgctgagagagc 467
              |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149821 gtcctttgggtccatttgttcctgcacctccagaaatagccatgcatatgctgagagagc 149762

                  
Query: 468    aagg 471
              ||||
Sbjct: 149761 aagg 149758



 Score =  105 bits (53), Expect = 2e-19
 Identities = 92/105 (87%)
 Strand = Plus / Minus

                                                                          
Query: 13     tgctcctgagtttgtttacaagcatttgcggctcaagcatccagagcttgtgttagaagt 72
              |||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  |
Sbjct: 151011 tgctcctgagttcgttcacaagcatttgaggctgaagcatccagagcttgtgttagagtt 150952

                                                           
Query: 73     tacttcaaaactccgggaggatatttatttcgaaaattacatgaa 117
               ||||| ||| |||| |||||| | |||||| |||||||||||||
Sbjct: 150951 gacttccaaagtccgagaggatctctatttccaaaattacatgaa 150907



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                       
Query: 608    aatgatctcgatgcccctgacgaggaagttactgttcttgactacagaagtttgtag 664
              ||||| || ||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 149336 aatgaccttgatgctccggacgaggaagttaccgttcttgactacagaagtttgtag 149280



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                        
Query: 122    cctaatgcaccaggtggaacaccagttatgcagcaatctgca 163
              ||||||||||| |||||||| ||||||||||| || ||||||
Sbjct: 150824 cctaatgcacctggtggaactccagttatgcaacagtctgca 150783



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 500    cctcatggcaactcaggagtgcttggatcgatgatggg 537
              ||||||| |||| |||||||||||||| | ||||||||
Sbjct: 149726 cctcatgccaacccaggagtgcttggaccaatgatggg 149689
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>ref|XM_464178.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2489

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                        
Query: 89   gaggatatttatttcgaaaattacatgaatgaccctaatgcaccaggtggaacaccagtt 148
            |||||||| |||||| ||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct: 1661 gaggatatctatttccaaaattatatgaatgatccaaatgctccaggtggcacaccagtt 1720

                     
Query: 149  atgcagcaa 157
            |||||||||
Sbjct: 1721 atgcagcaa 1729



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                              
Query: 392  cctgttcccggtgctggtccattgggaccatttgttcctgcacctccaga 441
            ||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1832 cctgtgcctggtgctggtccattgggtccatttgttcctgcacctccaga 1881



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                        
Query: 587  cctcgacgtctgcgaagctataatgatctcgatgcccctgacgaggaagttactgttctt 646
            ||||| |||||||||||||| || ||||| || || ||||| || ||||| ||| |  | 
Sbjct: 1940 cctcgtcgtctgcgaagctacaaagatcttgacgctcctgatgatgaagtcactctcgtg 1999

                              
Query: 647  gactacagaagtttgtag 664
            ||||||||||||||||||
Sbjct: 2000 gactacagaagtttgtag 2017
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>dbj|AK119431.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A04, full
            insert sequence
          Length = 2489

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                        
Query: 89   gaggatatttatttcgaaaattacatgaatgaccctaatgcaccaggtggaacaccagtt 148
            |||||||| |||||| ||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct: 1661 gaggatatctatttccaaaattatatgaatgatccaaatgctccaggtggcacaccagtt 1720

                     
Query: 149  atgcagcaa 157
            |||||||||
Sbjct: 1721 atgcagcaa 1729



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                              
Query: 392  cctgttcccggtgctggtccattgggaccatttgttcctgcacctccaga 441
            ||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1832 cctgtgcctggtgctggtccattgggtccatttgttcctgcacctccaga 1881



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                        
Query: 587  cctcgacgtctgcgaagctataatgatctcgatgcccctgacgaggaagttactgttctt 646
            ||||| |||||||||||||| || ||||| || || ||||| || ||||| ||| |  | 
Sbjct: 1940 cctcgtcgtctgcgaagctacaaagatcttgacgctcctgatgatgaagtcactctcgtg 1999

                              
Query: 647  gactacagaagtttgtag 664
            ||||||||||||||||||
Sbjct: 2000 gactacagaagtttgtag 2017
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>gb|AF311222.1|AF311222 Saccharum hybrid cultivar C2H2 zinc-finger protein SERRATE mRNA,
           partial cds
          Length = 1256

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 389 atgcctgttcccggtgctggtccattgggaccatttgttcctgcacctccagaaatagcc 448
           |||||||| || |||||||||||| | ||||| ||| |||||||||| || ||| | |||
Sbjct: 754 atgcctgtgcctggtgctggtccactcggaccgtttattcctgcaccaccggaagttgcc 813

                         
Query: 449 atgcatatgctgag 462
           ||||||||| ||||
Sbjct: 814 atgcatatgttgag 827
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                 
Query: 408     gtccattgggaccatttgttcctgcacctccaga 441
               |||||||||| |||||||||||||||||||||||
Sbjct: 2733380 gtccattgggtccatttgttcctgcacctccaga 2733413



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 125     aatgcaccaggtggaacaccagttatgcagcaa 157
               ||||| |||||||| ||||||||||||||||||
Sbjct: 2732457 aatgctccaggtggcacaccagttatgcagcaa 2732489



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       tatttcgaaaattacatgaa 117
                ||||||||||||||||||||
Sbjct: 24831316 tatttcgaaaattacatgaa 24831297
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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0050G13
          Length = 150685

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                              
Query: 408  gtccattgggaccatttgttcctgcacctccaga 441
            |||||||||| |||||||||||||||||||||||
Sbjct: 1608 gtccattgggtccatttgttcctgcacctccaga 1641



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 125 aatgcaccaggtggaacaccagttatgcagcaa 157
           ||||| |||||||| ||||||||||||||||||
Sbjct: 685 aatgctccaggtggcacaccagttatgcagcaa 717
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>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0479D12
          Length = 148362

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                
Query: 408    gtccattgggaccatttgttcctgcacctccaga 441
              |||||||||| |||||||||||||||||||||||
Sbjct: 135602 gtccattgggtccatttgttcctgcacctccaga 135635



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 125    aatgcaccaggtggaacaccagttatgcagcaa 157
              ||||| |||||||| ||||||||||||||||||
Sbjct: 134679 aatgctccaggtggcacaccagttatgcagcaa 134711
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>ref|NM_128268.2| Arabidopsis thaliana SE (SERRATE); transcription factor AT2G27100
            (SE) mRNA, complete cds
          Length = 2501

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 387  tgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacc 435
            ||||||||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct: 1959 tgatgcctgttcctggtgctgggccactgggaccatttgtaccagcacc 2007
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>gb|AY143937.1| Arabidopsis thaliana At2g27100/T20P8.15 mRNA, complete cds
          Length = 2163

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 387  tgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacc 435
            ||||||||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct: 1922 tgatgcctgttcctggtgctgggccactgggaccatttgtaccagcacc 1970
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>gb|AY142569.1| Arabidopsis thaliana unknown protein (At2g27100) mRNA, complete cds
          Length = 2194

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 387  tgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacc 435
            ||||||||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct: 1922 tgatgcctgttcctggtgctgggccactgggaccatttgtaccagcacc 1970
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>gb|AY039915.1| Arabidopsis thaliana unknown protein (At2g27100) mRNA, complete cds
          Length = 2473

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 387  tgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacc 435
            ||||||||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct: 1958 tgatgcctgttcctggtgctgggccactgggaccatttgtaccagcacc 2006
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>gb|AF428305.1|AF428305 Arabidopsis thaliana At2g27100/T20P8.15 mRNA, complete cds
          Length = 2454

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 387  tgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacc 435
            ||||||||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct: 1951 tgatgcctgttcctggtgctgggccactgggaccatttgtaccagcacc 1999
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>gb|AF311221.1|AF311221 Arabidopsis thaliana C2H2 zinc-finger protein SERRATE (SE) mRNA,
            complete cds
          Length = 2439

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 387  tgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacc 435
            ||||||||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct: 1946 tgatgcctgttcctggtgctgggccactgggaccatttgtaccagcacc 1994
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>ref|XM_483342.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2267

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                        
Query: 386  ttgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacctccagaaata 445
            ||||||||||| || |||||||| ||| | ||||||||| |||||||||| || ||| | 
Sbjct: 1772 ttgatgcctgtgcctggtgctggcccactaggaccatttattcctgcaccacctgaagtt 1831

                                
Query: 446  gccatgcatatgctgagaga 465
            || |||| |||| |||||||
Sbjct: 1832 gctatgcgtatgatgagaga 1851
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>dbj|AK120996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044G03, full
            insert sequence
          Length = 2849

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                        
Query: 386  ttgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacctccagaaata 445
            ||||||||||| || |||||||| ||| | ||||||||| |||||||||| || ||| | 
Sbjct: 1988 ttgatgcctgtgcctggtgctggcccactaggaccatttattcctgcaccacctgaagtt 2047

                                
Query: 446  gccatgcatatgctgagaga 465
            || |||| |||| |||||||
Sbjct: 2048 gctatgcgtatgatgagaga 2067
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>dbj|AK107181.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H03, full
           insert sequence
          Length = 2249

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 386 ttgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacctccagaaata 445
           ||||||||||| || |||||||| ||| | ||||||||| |||||||||| || ||| | 
Sbjct: 74  ttgatgcctgtgcctggtgctggcccactaggaccatttattcctgcaccacctgaagtt 133

                               
Query: 446 gccatgcatatgctgagaga 465
           || |||| |||| |||||||
Sbjct: 134 gctatgcgtatgatgagaga 153
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>dbj|AK069175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007J12, full
            insert sequence
          Length = 2267

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                        
Query: 386  ttgatgcctgttcccggtgctggtccattgggaccatttgttcctgcacctccagaaata 445
            ||||||||||| || |||||||| ||| | ||||||||| |||||||||| || ||| | 
Sbjct: 1772 ttgatgcctgtgcctggtgctggcccactaggaccatttattcctgcaccacctgaagtt 1831

                                
Query: 446  gccatgcatatgctgagaga 465
            || |||| |||| |||||||
Sbjct: 1832 gctatgcgtatgatgagaga 1851
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>gb|AF311223.1|AF311223 Zea mays C2H2 zinc-finger protein (SE1A) precursor RNA, partial cds
          Length = 2141

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                        
Query: 389  atgcctgttcccggtgctggtccattgggaccatttgttcctgcacctccagaaatagcc 448
            |||||||| || |||||||||||  | ||||| ||| |||| ||||| || ||| | |||
Sbjct: 1622 atgcctgtgcctggtgctggtccgctcggaccgtttattcccgcaccacccgaagttgcc 1681

                             
Query: 449  atgcatatgctgagaga 465
            ||||||||| |||||||
Sbjct: 1682 atgcatatgttgagaga 1698
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>gb|AC168883.3| Mus musculus 10 BAC RP23-406F5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 171839

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 433    acctccagaaatagccatgcatatgc 458
              ||||||||||||||| ||||||||||
Sbjct: 146350 acctccagaaatagctatgcatatgc 146375
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>gb|AC158621.9| Mus musculus 10 BAC RP23-294J10 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 172764

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 433   acctccagaaatagccatgcatatgc 458
             ||||||||||||||| ||||||||||
Sbjct: 69551 acctccagaaatagctatgcatatgc 69576
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>emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on chromosome 1 Contains two
              novel genes, complete sequence
          Length = 159399

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 636    ttactgttcttgactacagaagttt 660
              ||||| |||||||||||||||||||
Sbjct: 149406 ttactattcttgactacagaagttt 149430
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>gb|AC160112.2| Mus musculus BAC clone RP24-80F17 from chromosome 12, complete sequence
          Length = 230823

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 312   atcagatgtttgattccttcc 332
             |||||||||||||||||||||
Sbjct: 79679 atcagatgtttgattccttcc 79659
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 90       aggatatttatttcgaaaat 109
                ||||||||||||||||||||
Sbjct: 15098989 aggatatttatttcgaaaat 15098970
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>gb|AC124833.1| Homo sapiens BAC clone RP11-324E12 from 7, complete sequence
          Length = 80050

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    agtttgtttacaagcatttg 40
             ||||||||||||||||||||
Sbjct: 14076 agtttgtttacaagcatttg 14057
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>gb|AC005550.1| Homo sapiens PAC clone RP4-620P6 from 7, complete sequence
          Length = 133237

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   aatagccatgcatatgctga 461
             ||||||||||||||||||||
Sbjct: 23285 aatagccatgcatatgctga 23304
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>emb|AL359986.15| Human DNA sequence from clone RP11-106M14 on chromosome 10 Contains the
              PPP1R3C gene for protein phosphatase 1 regulatory
              (inhibitor) subunit 3C, a glyceraldehyde-3-phosphate
              dehydrogenase (GAPD) pseudogene and a CpG island, complete
              sequence
          Length = 173119

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 367    attccctgctccaccgatattgat 390
              |||||||||||||| |||||||||
Sbjct: 127426 attccctgctccactgatattgat 127403
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>emb|AL133462.23| Human DNA sequence from clone RP11-108A16 on chromosome 20 Contains the
             5' end of the gene for a novel protein (LOC284776),
             complete sequence
          Length = 84478

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aagatggaggcagacatggt 274
             ||||||||||||||||||||
Sbjct: 65157 aagatggaggcagacatggt 65176
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>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048F08, from chromosome 3, complete sequence
          Length = 155790

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    aggatatttatttcgaaaat 109
             ||||||||||||||||||||
Sbjct: 55784 aggatatttatttcgaaaat 55803
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 98       tatttcgaaaattacatgaa 117
                ||||||||||||||||||||
Sbjct: 16934403 tatttcgaaaattacatgaa 16934422
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 90       aggatatttatttcgaaaat 109
                ||||||||||||||||||||
Sbjct: 15093523 aggatatttatttcgaaaat 15093504
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       tatttcgaaaattacatgaa 117
                ||||||||||||||||||||
Sbjct: 10770394 tatttcgaaaattacatgaa 10770375
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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   gctgagagagcaaggacctt 476
             ||||||||||||||||||||
Sbjct: 41160 gctgagagagcaaggacctt 41179
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>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702D12
          Length = 137332

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tatttcgaaaattacatgaa 117
             ||||||||||||||||||||
Sbjct: 93208 tatttcgaaaattacatgaa 93189
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>gb|AC016689.4| Homo sapiens BAC clone RP11-81H20 from 2, complete sequence
          Length = 134841

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   ccaacaccaattatagccat 564
             ||||||||||||||||||||
Sbjct: 57894 ccaacaccaattatagccat 57875
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>dbj|AP006846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             fosmid clone:OSJNOa283G08
          Length = 38265

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tatttcgaaaattacatgaa 117
             ||||||||||||||||||||
Sbjct: 34680 tatttcgaaaattacatgaa 34661
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>dbj|AB091509.1| Penicillium chrysogenum mRNA for cystein synthase, complete cds
          Length = 1221

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 tgggaccatttgttcctgca 433
           ||||||||||||||||||||
Sbjct: 7   tgggaccatttgttcctgca 26
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>gb|AC012380.1|AC012380 Genomic Sequence For Homo sapiens Clone 125H5, Chromosome 20, complete
             sequence
          Length = 108623

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aagatggaggcagacatggt 274
             ||||||||||||||||||||
Sbjct: 39985 aagatggaggcagacatggt 40004
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>gb|AC006577.2|F15I1 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 89035

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    gatatttatttcgaaaattacatg 115
             ||||||||||| ||||||||||||
Sbjct: 83864 gatatttattttgaaaattacatg 83887
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>emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06,
             complete sequence
          Length = 100589

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tatttcgaaaattacatgaa 117
             ||||||||||||||||||||
Sbjct: 58228 tatttcgaaaattacatgaa 58247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,236,384
Number of Sequences: 3902068
Number of extensions: 5236384
Number of successful extensions: 91162
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90905
Number of HSP's gapped (non-prelim): 252
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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