No.
Definition
Score (bits)
E Value
1 dbj|AK120277.1| Oryza sativa (japonica cultivar-group) cDNA clon...
682
0.0
2 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
196
6e-47
3 dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D...
196
6e-47
4 dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic D...
196
6e-47
5 ref|NM_104867.1| Arabidopsis thaliana unknown protein AT1G61850 ...
135
2e-28
6 gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete s...
123
8e-25
7 gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 se...
86
2e-13
8 dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D...
44
0.56
9 gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1...
42
2.2
10 emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on ch...
42
2.2
11 gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
42
2.2
12 gb|BC059703.1| Danio rerio calsenilin, presenilin binding protei...
40
8.7
13 gb|AY380826.1| Lymphocystis disease virus - isolate China, compl...
40
8.7
14 gb|AC149782.2| Bos taurus BAC CH240-6M21 (Children's Hospital O...
40
8.7
15 gb|AC145900.3| Pan troglodytes BAC clone RP43-40I9 from 7, compl...
40
8.7
16 gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, com...
40
8.7
17 gb|AC110221.6| Mus musculus chromosome 3, clone RP24-567P14, com...
40
8.7
18 emb|AL672277.20| Human DNA sequence from clone RP11-309M23 on ch...
40
8.7
19 emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2
40
8.7
20 gb|AC164175.5| Mus musculus 10 BAC RP23-251I7 (Roswell Park Canc...
40
8.7
21 ref|NM_200819.1| Danio rerio calsenilin, presenilin binding prot...
40
8.7
22 emb|AL844605.5| Mouse DNA sequence from clone RP24-115D19 on chr...
40
8.7
23 gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Can...
40
8.7
24 gb|AC092724.2| Homo sapiens chromosome 16 clone RP11-571O6, comp...
40
8.7
25 gb|AC025284.4|AC025284 Homo sapiens chromosome 16 clone RP11-449...
40
8.7
26 gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22...
40
8.7
27 gb|AC084288.9| Mus musculus Strain C57BL6/J Chromosome 2 BAC, RP...
40
8.7
28 gb|AC124118.15| Mus musculus chromosome 3, clone RP23-152K14, co...
40
8.7
29 emb|AL928859.13| Mouse DNA sequence from clone RP23-479N10 on ch...
40
8.7
30 emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chrom...
40
8.7
31 emb|AL928964.7| Zebrafish DNA sequence from clone CH211-127I19, ...
40
8.7
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 196 bits (99), Expect = 6e-47
Identities = 126/135 (93%)
Strand = Plus / Minus
Query: 249 gtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataaga 308
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 20065280 gtaaatcgttggcaggatggagctattgtagccaacaatcccacaatctttgcgataaga 20065221
Query: 309 gaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggc 368
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 20065220 gaggcacaacttttgtggcctgatacgagaatagattgtctagtttcaatagggtgtggt 20065161
Query: 369 tcagttccaactaag 383
|||||||||||||||
Sbjct: 20065160 tcagttccaactaag 20065146
Score = 176 bits (89), Expect = 6e-41
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 114 gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
|||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 20065546 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 20065487
Query: 174 tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
|||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 20065486 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 20065427
Query: 234 gatttttctgatg 246
||||| |||||||
Sbjct: 20065426 gatttctctgatg 20065414
Score = 168 bits (85), Expect = 1e-38
Identities = 127/141 (90%)
Strand = Plus / Minus
Query: 382 agagccggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcat 441
|||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct: 20064407 agagtcggagaggtgggtggcgctacttggacacagggcaagttttaatagaaagttcat 20064348
Query: 442 gctcagtggagagagtggaagaaacgttggatacactgatacctatgcttcctgagatgc 501
|||| || |||||||| |||||||| ||||||||||||||||| ||||| || || ||||
Sbjct: 20064347 gctctgtagagagagttgaagaaactttggatacactgataccaatgctcccagaaatgc 20064288
Query: 502 aatatttccgctttaatccag 522
| |||||||||||||||||||
Sbjct: 20064287 agtatttccgctttaatccag 20064267
Score = 147 bits (74), Expect = 5e-32
Identities = 110/122 (90%)
Strand = Plus / Minus
Query: 520 cagttgatgaccggtgtggtatggagctagatgagactgacccggctgtctggcttaagt 579
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 20064142 cagttgatgagcggtgtggtatggaactagatgagactgatcctgctgtctggcttaagt 20064083
Query: 580 tggaggctgcaaccgaagagtacattcagaaaaatttacaggtttttaagaatgtttgtg 639
|||| |||||||| || ||||||||||||||||| || || | ||| |||||||||||||
Sbjct: 20064082 tggaagctgcaactgatgagtacattcagaaaaactttcaagatttcaagaatgtttgtg 20064023
Query: 640 ag 641
||
Sbjct: 20064022 ag 20064021
Score = 48.1 bits (24), Expect = 0.036
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 catgcctgcccaaccatatatatt 39
||||||||||||||||||||||||
Sbjct: 20065844 catgcctgcccaaccatatatatt 20065821
Score = 44.1 bits (22), Expect = 0.56
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 526 atgaccggtgtggtatggagct 547
||||||||||||||||||||||
Sbjct: 21759045 atgaccggtgtggtatggagct 21759024
>dbj|AP003930.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1657_A07
Length = 125217
Score = 196 bits (99), Expect = 6e-47
Identities = 126/135 (93%)
Strand = Plus / Minus
Query: 249 gtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataaga 308
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 29883 gtaaatcgttggcaggatggagctattgtagccaacaatcccacaatctttgcgataaga 29824
Query: 309 gaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggc 368
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 29823 gaggcacaacttttgtggcctgatacgagaatagattgtctagtttcaatagggtgtggt 29764
Query: 369 tcagttccaactaag 383
|||||||||||||||
Sbjct: 29763 tcagttccaactaag 29749
Score = 176 bits (89), Expect = 6e-41
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 114 gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
|||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 30149 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 30090
Query: 174 tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
|||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 30089 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 30030
Query: 234 gatttttctgatg 246
||||| |||||||
Sbjct: 30029 gatttctctgatg 30017
Score = 168 bits (85), Expect = 1e-38
Identities = 127/141 (90%)
Strand = Plus / Minus
Query: 382 agagccggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcat 441
|||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct: 29010 agagtcggagaggtgggtggcgctacttggacacagggcaagttttaatagaaagttcat 28951
Query: 442 gctcagtggagagagtggaagaaacgttggatacactgatacctatgcttcctgagatgc 501
|||| || |||||||| |||||||| ||||||||||||||||| ||||| || || ||||
Sbjct: 28950 gctctgtagagagagttgaagaaactttggatacactgataccaatgctcccagaaatgc 28891
Query: 502 aatatttccgctttaatccag 522
| |||||||||||||||||||
Sbjct: 28890 agtatttccgctttaatccag 28870
Score = 147 bits (74), Expect = 5e-32
Identities = 110/122 (90%)
Strand = Plus / Minus
Query: 520 cagttgatgaccggtgtggtatggagctagatgagactgacccggctgtctggcttaagt 579
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 28745 cagttgatgagcggtgtggtatggaactagatgagactgatcctgctgtctggcttaagt 28686
Query: 580 tggaggctgcaaccgaagagtacattcagaaaaatttacaggtttttaagaatgtttgtg 639
|||| |||||||| || ||||||||||||||||| || || | ||| |||||||||||||
Sbjct: 28685 tggaagctgcaactgatgagtacattcagaaaaactttcaagatttcaagaatgtttgtg 28626
Query: 640 ag 641
||
Sbjct: 28625 ag 28624
Score = 48.1 bits (24), Expect = 0.036
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 catgcctgcccaaccatatatatt 39
||||||||||||||||||||||||
Sbjct: 30447 catgcctgcccaaccatatatatt 30424
>dbj|AP003850.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1793_E11
Length = 101342
Score = 196 bits (99), Expect = 6e-47
Identities = 126/135 (93%)
Strand = Plus / Minus
Query: 249 gtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataaga 308
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 98840 gtaaatcgttggcaggatggagctattgtagccaacaatcccacaatctttgcgataaga 98781
Query: 309 gaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggc 368
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 98780 gaggcacaacttttgtggcctgatacgagaatagattgtctagtttcaatagggtgtggt 98721
Query: 369 tcagttccaactaag 383
|||||||||||||||
Sbjct: 98720 tcagttccaactaag 98706
Score = 176 bits (89), Expect = 6e-41
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 114 gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
|||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 99106 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 99047
Query: 174 tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
|||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 99046 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 98987
Query: 234 gatttttctgatg 246
||||| |||||||
Sbjct: 98986 gatttctctgatg 98974
Score = 168 bits (85), Expect = 1e-38
Identities = 127/141 (90%)
Strand = Plus / Minus
Query: 382 agagccggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcat 441
|||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct: 97967 agagtcggagaggtgggtggcgctacttggacacagggcaagttttaatagaaagttcat 97908
Query: 442 gctcagtggagagagtggaagaaacgttggatacactgatacctatgcttcctgagatgc 501
|||| || |||||||| |||||||| ||||||||||||||||| ||||| || || ||||
Sbjct: 97907 gctctgtagagagagttgaagaaactttggatacactgataccaatgctcccagaaatgc 97848
Query: 502 aatatttccgctttaatccag 522
| |||||||||||||||||||
Sbjct: 97847 agtatttccgctttaatccag 97827
Score = 147 bits (74), Expect = 5e-32
Identities = 110/122 (90%)
Strand = Plus / Minus
Query: 520 cagttgatgaccggtgtggtatggagctagatgagactgacccggctgtctggcttaagt 579
|||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 97702 cagttgatgagcggtgtggtatggaactagatgagactgatcctgctgtctggcttaagt 97643
Query: 580 tggaggctgcaaccgaagagtacattcagaaaaatttacaggtttttaagaatgtttgtg 639
|||| |||||||| || ||||||||||||||||| || || | ||| |||||||||||||
Sbjct: 97642 tggaagctgcaactgatgagtacattcagaaaaactttcaagatttcaagaatgtttgtg 97583
Query: 640 ag 641
||
Sbjct: 97582 ag 97581
Score = 48.1 bits (24), Expect = 0.036
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 catgcctgcccaaccatatatatt 39
||||||||||||||||||||||||
Sbjct: 99404 catgcctgcccaaccatatatatt 99381
>emb|AL606482.14 | Mouse DNA sequence from clone RP23-360H16 on chromosome 11 Contains the
genes for olfactory receptors MOR135-7, -8, -10 and -28,
three olfactory receptor MOR135 pseudogenes, and the gene
for olfactory receptor MOR157-1, complete sequence
Length = 199115
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 cagttggaacggttgtttctg 132
|||||||||||||||||||||
Sbjct: 39170 cagttggaacggttgtttctg 39190
>gb|BC059703.1 | Danio rerio calsenilin, presenilin binding protein, EF hand
transcription factor, like, mRNA (cDNA clone MGC:73400
IMAGE:4788096), complete cds
Length = 1090
Score = 40.1 bits (20), Expect = 8.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 448 tggagagagtggaagaaacg 467
||||||||||||||||||||
Sbjct: 19 tggagagagtggaagaaacg 38
>emb|AL928964.7 | Zebrafish DNA sequence from clone CH211-127I19, complete sequence
Length = 168321
Score = 40.1 bits (20), Expect = 8.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 aatggcagaaagtccatcta 105
||||||||||||||||||||
Sbjct: 162816 aatggcagaaagtccatcta 162797
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,359,192
Number of Sequences: 3902068
Number of extensions: 5359192
Number of successful extensions: 103442
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103322
Number of HSP's gapped (non-prelim): 118
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)