ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK120277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 682 0.0
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
3dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
4dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
5ref|NM_104867.1| Arabidopsis thaliana unknown protein AT1G61850 ... 135 2e-28
6gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete s... 123 8e-25
7gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 se... 86 2e-13
8dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
9gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1... 42 2.2
10emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on ch... 42 2.2
11gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 42 2.2
12gb|BC059703.1| Danio rerio calsenilin, presenilin binding protei... 40 8.7
13gb|AY380826.1| Lymphocystis disease virus - isolate China, compl... 40 8.7
14gb|AC149782.2| Bos taurus BAC CH240-6M21 (Children's Hospital O... 40 8.7
15gb|AC145900.3| Pan troglodytes BAC clone RP43-40I9 from 7, compl... 40 8.7
16gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, com... 40 8.7
17gb|AC110221.6| Mus musculus chromosome 3, clone RP24-567P14, com... 40 8.7
18emb|AL672277.20| Human DNA sequence from clone RP11-309M23 on ch... 40 8.7
19emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 40 8.7
20gb|AC164175.5| Mus musculus 10 BAC RP23-251I7 (Roswell Park Canc... 40 8.7
21ref|NM_200819.1| Danio rerio calsenilin, presenilin binding prot... 40 8.7
22emb|AL844605.5| Mouse DNA sequence from clone RP24-115D19 on chr... 40 8.7
23gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Can... 40 8.7
24gb|AC092724.2| Homo sapiens chromosome 16 clone RP11-571O6, comp... 40 8.7
25gb|AC025284.4|AC025284 Homo sapiens chromosome 16 clone RP11-449... 40 8.7
26gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22... 40 8.7
27gb|AC084288.9| Mus musculus Strain C57BL6/J Chromosome 2 BAC, RP... 40 8.7
28gb|AC124118.15| Mus musculus chromosome 3, clone RP23-152K14, co... 40 8.7
29emb|AL928859.13| Mouse DNA sequence from clone RP23-479N10 on ch... 40 8.7
30emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chrom... 40 8.7
31emb|AL928964.7| Zebrafish DNA sequence from clone CH211-127I19, ... 40 8.7

>dbj|AK120277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049C19, full
            insert sequence
          Length = 4229

 Score =  682 bits (344), Expect = 0.0
 Identities = 482/528 (91%)
 Strand = Plus / Plus

                                                                        
Query: 114  gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
            |||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 2481 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 2540

                                                                        
Query: 174  tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
            |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2541 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 2600

                                                                        
Query: 234  gatttttctgatgatgtaaatcgctggcaagatggagctattgtagcaaacaatcccacg 293
            ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2601 gatttctctgatgacgtaaatcgttggcaggatggagctattgtagccaacaatcccaca 2660

                                                                        
Query: 294  atctttgcaataagagaagcacaacttttgtggcctgatacgagaatagattgcctagtt 353
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2661 atctttgcgataagagaggcacaacttttgtggcctgatacgagaatagattgtctagtt 2720

                                                                        
Query: 354  tcaattgggtgtggctcagttccaactaagagccggagaggtggatggcgttacttggac 413
            ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 2721 tcaatagggtgtggttcagttccaactaagagtcggagaggtgggtggcgctacttggac 2780

                                                                        
Query: 414  accgggcaagttttaatagaaagtgcatgctcagtggagagagtggaagaaacgttggat 473
            || ||||||||||||||||||||| ||||||| || |||||||| |||||||| ||||||
Sbjct: 2781 acagggcaagttttaatagaaagttcatgctctgtagagagagttgaagaaactttggat 2840

                                                                        
Query: 474  acactgatacctatgcttcctgagatgcaatatttccgctttaatccagttgatgaccgg 533
            ||||||||||||||||| || || ||||| |||||||||||||||||||||||||| |||
Sbjct: 2841 acactgatacctatgctcccagaaatgcagtatttccgctttaatccagttgatgagcgg 2900

                                                                        
Query: 534  tgtggtatggagctagatgagactgacccggctgtctggcttaagttggaggctgcaacc 593
            ||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| 
Sbjct: 2901 tgtggtatggaactagatgagactgatcctgctgtctggcttaagttggaagctgcaact 2960

                                                            
Query: 594  gaagagtacattcagaaaaatttacaggtttttaagaatgtttgtgag 641
            || ||||||||||||||||| || || | ||| |||||||||||||||
Sbjct: 2961 gatgagtacattcagaaaaactttcaagatttcaagaatgtttgtgag 3008



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 112/138 (81%), Gaps = 1/138 (0%)
 Strand = Plus / Plus

                                                                        
Query: 16   catgcctgcccaaccatatatatttcggnaactatcagtatccacccggcactctggagg 75
            |||||||||||||||||||||| ||| | || || ||||| ||||| |||||| |||| |
Sbjct: 2333 catgcctgcccaaccatatata-ttccgaaattaccagtacccacctggcactgtggaag 2391

                                                                        
Query: 76   tatcaccaggaatggcagaaagtccatctactggtgcagttggaacggttgtttctggtg 135
            ||||| |||  ||| ||||||| ||||| | |||  ||| |||||||   ||||||||||
Sbjct: 2392 tatcatcagtcatgacagaaagcccatcaattggctcagctggaacgcccgtttctggtg 2451

                              
Query: 136  caccagttgggattaaac 153
            | || || || |||||||
Sbjct: 2452 ccccggtcggtattaaac 2469



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  196 bits (99), Expect = 6e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                            
Query: 249      gtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataaga 308
                |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 20065280 gtaaatcgttggcaggatggagctattgtagccaacaatcccacaatctttgcgataaga 20065221

                                                                            
Query: 309      gaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggc 368
                || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 20065220 gaggcacaacttttgtggcctgatacgagaatagattgtctagtttcaatagggtgtggt 20065161

                               
Query: 369      tcagttccaactaag 383
                |||||||||||||||
Sbjct: 20065160 tcagttccaactaag 20065146



 Score =  176 bits (89), Expect = 6e-41
 Identities = 122/133 (91%)
 Strand = Plus / Minus

                                                                            
Query: 114      gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
                |||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 20065546 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 20065487

                                                                            
Query: 174      tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
                |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 20065486 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 20065427

                             
Query: 234      gatttttctgatg 246
                ||||| |||||||
Sbjct: 20065426 gatttctctgatg 20065414



 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                            
Query: 382      agagccggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcat 441
                |||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct: 20064407 agagtcggagaggtgggtggcgctacttggacacagggcaagttttaatagaaagttcat 20064348

                                                                            
Query: 442      gctcagtggagagagtggaagaaacgttggatacactgatacctatgcttcctgagatgc 501
                |||| || |||||||| |||||||| ||||||||||||||||| ||||| || || ||||
Sbjct: 20064347 gctctgtagagagagttgaagaaactttggatacactgataccaatgctcccagaaatgc 20064288

                                     
Query: 502      aatatttccgctttaatccag 522
                | |||||||||||||||||||
Sbjct: 20064287 agtatttccgctttaatccag 20064267



 Score =  147 bits (74), Expect = 5e-32
 Identities = 110/122 (90%)
 Strand = Plus / Minus

                                                                            
Query: 520      cagttgatgaccggtgtggtatggagctagatgagactgacccggctgtctggcttaagt 579
                |||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 20064142 cagttgatgagcggtgtggtatggaactagatgagactgatcctgctgtctggcttaagt 20064083

                                                                            
Query: 580      tggaggctgcaaccgaagagtacattcagaaaaatttacaggtttttaagaatgtttgtg 639
                |||| |||||||| || ||||||||||||||||| || || | ||| |||||||||||||
Sbjct: 20064082 tggaagctgcaactgatgagtacattcagaaaaactttcaagatttcaagaatgtttgtg 20064023

                  
Query: 640      ag 641
                ||
Sbjct: 20064022 ag 20064021



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 16       catgcctgcccaaccatatatatt 39
                ||||||||||||||||||||||||
Sbjct: 20065844 catgcctgcccaaccatatatatt 20065821



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 526      atgaccggtgtggtatggagct 547
                ||||||||||||||||||||||
Sbjct: 21759045 atgaccggtgtggtatggagct 21759024



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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score =  196 bits (99), Expect = 6e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                         
Query: 249   gtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataaga 308
             |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 29883 gtaaatcgttggcaggatggagctattgtagccaacaatcccacaatctttgcgataaga 29824

                                                                         
Query: 309   gaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggc 368
             || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 29823 gaggcacaacttttgtggcctgatacgagaatagattgtctagtttcaatagggtgtggt 29764

                            
Query: 369   tcagttccaactaag 383
             |||||||||||||||
Sbjct: 29763 tcagttccaactaag 29749



 Score =  176 bits (89), Expect = 6e-41
 Identities = 122/133 (91%)
 Strand = Plus / Minus

                                                                         
Query: 114   gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
             |||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 30149 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 30090

                                                                         
Query: 174   tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
             |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 30089 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 30030

                          
Query: 234   gatttttctgatg 246
             ||||| |||||||
Sbjct: 30029 gatttctctgatg 30017



 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                         
Query: 382   agagccggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcat 441
             |||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct: 29010 agagtcggagaggtgggtggcgctacttggacacagggcaagttttaatagaaagttcat 28951

                                                                         
Query: 442   gctcagtggagagagtggaagaaacgttggatacactgatacctatgcttcctgagatgc 501
             |||| || |||||||| |||||||| ||||||||||||||||| ||||| || || ||||
Sbjct: 28950 gctctgtagagagagttgaagaaactttggatacactgataccaatgctcccagaaatgc 28891

                                  
Query: 502   aatatttccgctttaatccag 522
             | |||||||||||||||||||
Sbjct: 28890 agtatttccgctttaatccag 28870



 Score =  147 bits (74), Expect = 5e-32
 Identities = 110/122 (90%)
 Strand = Plus / Minus

                                                                         
Query: 520   cagttgatgaccggtgtggtatggagctagatgagactgacccggctgtctggcttaagt 579
             |||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 28745 cagttgatgagcggtgtggtatggaactagatgagactgatcctgctgtctggcttaagt 28686

                                                                         
Query: 580   tggaggctgcaaccgaagagtacattcagaaaaatttacaggtttttaagaatgtttgtg 639
             |||| |||||||| || ||||||||||||||||| || || | ||| |||||||||||||
Sbjct: 28685 tggaagctgcaactgatgagtacattcagaaaaactttcaagatttcaagaatgtttgtg 28626

               
Query: 640   ag 641
             ||
Sbjct: 28625 ag 28624



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 16    catgcctgcccaaccatatatatt 39
             ||||||||||||||||||||||||
Sbjct: 30447 catgcctgcccaaccatatatatt 30424



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>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1793_E11
          Length = 101342

 Score =  196 bits (99), Expect = 6e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                         
Query: 249   gtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataaga 308
             |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 98840 gtaaatcgttggcaggatggagctattgtagccaacaatcccacaatctttgcgataaga 98781

                                                                         
Query: 309   gaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggc 368
             || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 98780 gaggcacaacttttgtggcctgatacgagaatagattgtctagtttcaatagggtgtggt 98721

                            
Query: 369   tcagttccaactaag 383
             |||||||||||||||
Sbjct: 98720 tcagttccaactaag 98706



 Score =  176 bits (89), Expect = 6e-41
 Identities = 122/133 (91%)
 Strand = Plus / Minus

                                                                         
Query: 114   gttggaacggttgtttctggtgcaccagttgggattaaacgtggagcttttatggggagc 173
             |||||||| | ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 99106 gttggaactgctgtttctggtgcaccggttggtattaaacgtggtgctttcatgggtagc 99047

                                                                         
Query: 174   tgcaagcatcacgtatgggaagccataagagcatcatctgcagctccatattatctggat 233
             |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 99046 tgcaagcatcgcatatgggaagccataagagcatcttctgcagctccatattatctggat 98987

                          
Query: 234   gatttttctgatg 246
             ||||| |||||||
Sbjct: 98986 gatttctctgatg 98974



 Score =  168 bits (85), Expect = 1e-38
 Identities = 127/141 (90%)
 Strand = Plus / Minus

                                                                         
Query: 382   agagccggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcat 441
             |||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct: 97967 agagtcggagaggtgggtggcgctacttggacacagggcaagttttaatagaaagttcat 97908

                                                                         
Query: 442   gctcagtggagagagtggaagaaacgttggatacactgatacctatgcttcctgagatgc 501
             |||| || |||||||| |||||||| ||||||||||||||||| ||||| || || ||||
Sbjct: 97907 gctctgtagagagagttgaagaaactttggatacactgataccaatgctcccagaaatgc 97848

                                  
Query: 502   aatatttccgctttaatccag 522
             | |||||||||||||||||||
Sbjct: 97847 agtatttccgctttaatccag 97827



 Score =  147 bits (74), Expect = 5e-32
 Identities = 110/122 (90%)
 Strand = Plus / Minus

                                                                         
Query: 520   cagttgatgaccggtgtggtatggagctagatgagactgacccggctgtctggcttaagt 579
             |||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 97702 cagttgatgagcggtgtggtatggaactagatgagactgatcctgctgtctggcttaagt 97643

                                                                         
Query: 580   tggaggctgcaaccgaagagtacattcagaaaaatttacaggtttttaagaatgtttgtg 639
             |||| |||||||| || ||||||||||||||||| || || | ||| |||||||||||||
Sbjct: 97642 tggaagctgcaactgatgagtacattcagaaaaactttcaagatttcaagaatgtttgtg 97583

               
Query: 640   ag 641
             ||
Sbjct: 97582 ag 97581



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 16    catgcctgcccaaccatatatatt 39
             ||||||||||||||||||||||||
Sbjct: 99404 catgcctgcccaaccatatatatt 99381



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>ref|NM_104867.1| Arabidopsis thaliana unknown protein AT1G61850 mRNA, complete cds
          Length = 3798

 Score =  135 bits (68), Expect = 2e-28
 Identities = 241/299 (80%), Gaps = 6/299 (2%)
 Strand = Plus / Plus

                                                                        
Query: 159  gcttttatggggagctgcaagcatcacgtatgggaagccataagagcatcatctgcagct 218
            ||||||||||| || || |||||||| || ||| |||| ||| |||||||||| || |||
Sbjct: 1954 gcttttatgggaagttgtaagcatcaggtttggcaagcgatacgagcatcatcagctgct 2013

                                                                        
Query: 219  ccatattatctggatgatttttctgatgatgtaaa------tcgctggcaagatggagct 272
            ||||||||||| ||||||||||| | || |  |||      ||||||||||||||| || 
Sbjct: 2014 ccatattatcttgatgatttttcagttggtacaaactcatatcgctggcaagatggtgca 2073

                                                                        
Query: 273  attgtagcaaacaatcccacgatctttgcaataagagaagcacaacttttgtggcctgat 332
            || || ||||||||||| || |||||||| || ||||||||||||||| | |||||||| 
Sbjct: 2074 atagtggcaaacaatcctacaatctttgccatcagagaagcacaacttctatggcctgac 2133

                                                                        
Query: 333  acgagaatagattgcctagtttcaattgggtgtggctcagttccaactaagagccggaga 392
            || | ||| |||||| | ||||| ||||| | |||||| || ||||| | |   |||| |
Sbjct: 2134 acaaaaattgattgcttggtttcgattggctctggctctgtaccaacaagggtacggaaa 2193

                                                                       
Query: 393  ggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcatgctcagtgga 451
            |||||||||||||| || || || ||||||||  | || || |||||||||||||||||
Sbjct: 2194 ggtggatggcgttatttagatactgggcaagtactgattgagagtgcatgctcagtgga 2252



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 72/89 (80%)
 Strand = Plus / Plus

                                                                        
Query: 501  caatatttccgctttaatccagttgatgaccggtgtggtatggagctagatgagactgac 560
            |||||||| || || || |||||||| || || ||||| |||||| | ||||||||||| 
Sbjct: 2302 caatattttcggttcaacccagttgacgatcgctgtggaatggagttggatgagactgat 2361

                                         
Query: 561  ccggctgtctggcttaagttggaggctgc 589
            || ||  ||||||| || ||||| |||||
Sbjct: 2362 ccagcgatctggctaaaattggaagctgc 2390



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>gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete sequence
          Length = 125561

 Score =  123 bits (62), Expect = 8e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                         
Query: 246   gatgtaaatcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaata 305
             ||||| || ||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct: 41867 gatgtcaaccgctggcaagatggagcaattgtggcaaacaatcctacgatttttgcgata 41808

                                                                         
Query: 306   agagaagcacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgt 365
             ||||||||||||||| |||||||||| || | ||| ||||| || ||||| || || |||
Sbjct: 41807 agagaagcacaacttctgtggcctgacacaaaaattgattgtctggtttccataggatgt 41748

                               
Query: 366   ggctcagttccaactaag 383
             || || ||||||||||||
Sbjct: 41747 ggttctgttccaactaag 41730



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 201   agagcatcatctgcagctccatattatctggatgatttttctgatg 246
             |||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 42024 agagcatcgtctgctgctccatattatcttgatgatttttctgatg 41979



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 481   tacctatgcttcctgagatgcaatatttccgctttaatccag 522
             |||||||||||||||||||||| ||||| || || |||||||
Sbjct: 41445 tacctatgcttcctgagatgcactattttcgtttcaatccag 41404



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>gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence
          Length = 115641

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 106/127 (83%)
 Strand = Plus / Plus

                                                                         
Query: 253   atcgctggcaagatggagctattgtagcaaacaatcccacgatctttgcaataagagaag 312
             |||||||||||||||| || || || ||||||||||| || |||||||| || |||||||
Sbjct: 36600 atcgctggcaagatggtgcaatagtggcaaacaatcctacaatctttgccatcagagaag 36659

                                                                         
Query: 313   cacaacttttgtggcctgatacgagaatagattgcctagtttcaattgggtgtggctcag 372
             |||||||| | |||||||| || | ||| |||||| | ||||| ||||| | |||||| |
Sbjct: 36660 cacaacttctatggcctgacacaaaaattgattgcttggtttcgattggctctggctctg 36719

                    
Query: 373   ttccaac 379
             | |||||
Sbjct: 36720 taccaac 36726



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                         
Query: 159   gcttttatggggagctgcaagcatcacgtatgggaagccataagagcatcatctgcagct 218
             ||||||||||| || || |||||||| || ||| |||| ||| |||||||||| || |||
Sbjct: 36409 gcttttatgggaagttgtaagcatcaggtttggcaagcgatacgagcatcatcagctgct 36468

                                    
Query: 219   ccatattatctggatgatttttc 241
             ||||||||||| |||||||||||
Sbjct: 36469 ccatattatcttgatgatttttc 36491



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 387   cggagaggtggatggcgttacttggacaccgggcaagttttaatagaaagtgcatgctca 446
             |||| ||||||||||||||| || || || ||||||||  | || || ||||||||||||
Sbjct: 36880 cggaaaggtggatggcgttatttagatactgggcaagtactgattgagagtgcatgctca 36939

                  
Query: 447   gtgga 451
             |||||
Sbjct: 36940 gtgga 36944



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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 526   atgaccggtgtggtatggagct 547
             ||||||||||||||||||||||
Sbjct: 76228 atgaccggtgtggtatggagct 76207



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>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence
          Length = 132371

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    gatgatttttctgatgatgta 251
              |||||||||||||||||||||
Sbjct: 113468 gatgatttttctgatgatgta 113488



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>emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on chromosome 11 Contains the
             genes for olfactory receptors MOR135-7, -8, -10 and -28,
             three olfactory receptor MOR135 pseudogenes, and the gene
             for olfactory receptor MOR157-1, complete sequence
          Length = 199115

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 112   cagttggaacggttgtttctg 132
             |||||||||||||||||||||
Sbjct: 39170 cagttggaacggttgtttctg 39190



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 231     gatgatttttctgatgatgtaaatc 255
               ||||||| |||||||||||||||||
Sbjct: 1057404 gatgattattctgatgatgtaaatc 1057428



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>gb|BC059703.1| Danio rerio calsenilin, presenilin binding protein, EF hand
           transcription factor, like, mRNA (cDNA clone MGC:73400
           IMAGE:4788096), complete cds
          Length = 1090

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 tggagagagtggaagaaacg 467
           ||||||||||||||||||||
Sbjct: 19  tggagagagtggaagaaacg 38



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>gb|AY380826.1| Lymphocystis disease virus - isolate China, complete genome
          Length = 186250

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 231    gatgatttttctgatgatgtaaat 254
              ||||||||||||||||||| ||||
Sbjct: 102423 gatgatttttctgatgatgaaaat 102400



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>gb|AC149782.2| Bos taurus  BAC CH240-6M21 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 196394

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   aagagaagcacaacttttgt 324
             ||||||||||||||||||||
Sbjct: 21119 aagagaagcacaacttttgt 21100



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>gb|AC145900.3| Pan troglodytes BAC clone RP43-40I9 from 7, complete sequence
          Length = 160229

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 598   agtacattcagaaaaattta 617
             ||||||||||||||||||||
Sbjct: 29979 agtacattcagaaaaattta 29998



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>gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, complete sequence
          Length = 179312

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 610    aaaatttacaggtttttaag 629
              ||||||||||||||||||||
Sbjct: 142046 aaaatttacaggtttttaag 142027



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>gb|AC110221.6| Mus musculus chromosome 3, clone RP24-567P14, complete sequence
          Length = 138203

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 229    tggatgatttttctgatgatgtaa 252
              ||||||||||| ||||||||||||
Sbjct: 130880 tggatgattttactgatgatgtaa 130903



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>emb|AL672277.20| Human DNA sequence from clone RP11-309M23 on chromosome X contains a
             novel gene and a ribosomal protein L14 (RPL14) pseudogene,
             complete sequence
          Length = 131682

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    gaatggcagaaagtccatct 104
             ||||||||||||||||||||
Sbjct: 74141 gaatggcagaaagtccatct 74160



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>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2
          Length = 384550

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gatgatttttctgatgatgt 250
             ||||||||||||||||||||
Sbjct: 41763 gatgatttttctgatgatgt 41744



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>gb|AC164175.5| Mus musculus 10 BAC RP23-251I7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180924

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 610    aaaatttacaggtttttaag 629
              ||||||||||||||||||||
Sbjct: 143043 aaaatttacaggtttttaag 143062



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>ref|NM_200819.1| Danio rerio calsenilin, presenilin binding protein, EF hand
           transcription factor, like (csenl), mRNA
          Length = 1090

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 tggagagagtggaagaaacg 467
           ||||||||||||||||||||
Sbjct: 19  tggagagagtggaagaaacg 38



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>emb|AL844605.5| Mouse DNA sequence from clone RP24-115D19 on chromosome 2, complete
              sequence
          Length = 188958

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    agtggagagagtggaagaaa 465
              ||||||||||||||||||||
Sbjct: 141684 agtggagagagtggaagaaa 141665



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>gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151482

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   ctccatattatctggatgattttt 240
             |||||| |||||||||||||||||
Sbjct: 20614 ctccattttatctggatgattttt 20637



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>gb|AC092724.2| Homo sapiens chromosome 16 clone RP11-571O6, complete sequence
          Length = 176521

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 614    tttacaggtttttaagaatg 633
              ||||||||||||||||||||
Sbjct: 167889 tttacaggtttttaagaatg 167870



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>gb|AC025284.4|AC025284 Homo sapiens chromosome 16 clone RP11-449J10, complete sequence
          Length = 164603

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 614    tttacaggtttttaagaatg 633
              ||||||||||||||||||||
Sbjct: 149227 tttacaggtttttaagaatg 149246



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>gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22, complete sequence
          Length = 219436

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 598    agtacattcagaaaaattta 617
              ||||||||||||||||||||
Sbjct: 133733 agtacattcagaaaaattta 133752



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>gb|AC084288.9| Mus musculus Strain C57BL6/J Chromosome 2 BAC, RP23-108H5, complete
              sequence
          Length = 200393

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    agtggagagagtggaagaaa 465
              ||||||||||||||||||||
Sbjct: 131473 agtggagagagtggaagaaa 131492



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>gb|AC124118.15| Mus musculus chromosome 3, clone RP23-152K14, complete sequence
          Length = 199667

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 229  tggatgatttttctgatgatgtaa 252
            ||||||||||| ||||||||||||
Sbjct: 4538 tggatgattttactgatgatgtaa 4561



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>emb|AL928859.13| Mouse DNA sequence from clone RP23-479N10 on chromosome 2, complete
              sequence
          Length = 135750

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 316    aacttttgtggcctgatacgagaa 339
              ||||||||||||| ||||||||||
Sbjct: 134643 aacttttgtggccagatacgagaa 134620



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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
           sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 316 aacttttgtggcctgatacgagaa 339
           ||||||||||||| ||||||||||
Sbjct: 893 aacttttgtggccagatacgagaa 870



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>emb|AL928964.7| Zebrafish DNA sequence from clone CH211-127I19, complete sequence
          Length = 168321

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aatggcagaaagtccatcta 105
              ||||||||||||||||||||
Sbjct: 162816 aatggcagaaagtccatcta 162797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,359,192
Number of Sequences: 3902068
Number of extensions: 5359192
Number of successful extensions: 103442
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103322
Number of HSP's gapped (non-prelim): 118
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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