| Clone Name | bags5l02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105240.1| Zea mays PCO115424 mRNA sequence Length = 472 Score = 97.6 bits (49), Expect = 3e-17 Identities = 179/223 (80%), Gaps = 3/223 (1%) Strand = Plus / Plus Query: 178 ggcaacttnaacaacgccttcccgtccagcaacccgnagggggacaagtttgttttccgg 237 ||||| || |||||||| |||||||| |||| ||| | ||| ||| ||| || |||||| Sbjct: 131 ggcaagttcaacaacgctttcccgtcgagcagccccgacgggaacaggttcgtgttccgg 190 Query: 238 tcgacgagggacggcggcnaggaaaagttccacaagaacctctacatcatggaggacgcc 297 ||||| |||||||||||| | | ||| ||||||||||| |||||| |||| |||| Sbjct: 191 tcgaccagggacggcggcgacaagaag---cacaagaacctgtacatcgcggagaacgcg 247 Query: 298 gaggtcggggagttcagcgaaggtacggtgacgcggctcaccgacgggccgtggaccgac 357 ||||| || |||| |||| || |||||||||||||| ||| ||||| |||||| ||| Sbjct: 248 gaggtgggcgagtatggcgacggcacggtgacgcggctgaccaacggggagtggacggac 307 Query: 358 acccactgcagctggtcgnccaggggggactgggtcgtcttct 400 || |||||| |||||| |||| ||||||||| ||||||||| Sbjct: 308 acgcactgccagtggtcgcccagcggggactggatcgtcttct 350
>ref|XM_470902.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2235 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 268 cacaagaacctctacatcatggaggacgccgaggtcggggagttcagcgaaggtacggtg 327 ||||||||||| ||| ||||||||||||||| ||||| |||||| || | | |||| Sbjct: 1567 cacaagaacctgtacgtcatggaggacgccgccgtcggcgagttcggcaccagcaaggtg 1626 Query: 328 acgcggctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 ||||| |||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 1627 acgcgcctcaccagcggcgcgtggacggacacccactgcagctggtcg 1674 Score = 42.1 bits (21), Expect = 1.4 Identities = 79/99 (79%) Strand = Plus / Plus Query: 28 ttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtgggtccg 87 ||||| |||||||||||||||||| | | |||||||| ||||| ||||| || || Sbjct: 1327 ttctccacggcgtggaaccagaacacggcgctcgacacgctctacgtctgcgtcggcccc 1386 Query: 88 tccttctccgncgccaagccgntggagatctacgccatc 126 |||||| || || ||||||| | |||||||||||||| Sbjct: 1387 tccttcagcgccgacaagccgctccagatctacgccatc 1425
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 268 cacaagaacctctacatcatggaggacgccgaggtcggggagttcagcgaaggtacggtg 327 ||||||||||| ||| ||||||||||||||| ||||| |||||| || | | |||| Sbjct: 16265221 cacaagaacctgtacgtcatggaggacgccgccgtcggcgagttcggcaccagcaaggtg 16265280 Query: 328 acgcggctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 ||||| |||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 16265281 acgcgcctcaccagcggcgcgtggacggacacccactgcagctggtcg 16265328 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 11242341 caagaacctgtacataatggaggacgccga 11242370 Score = 42.1 bits (21), Expect = 1.4 Identities = 79/99 (79%) Strand = Plus / Plus Query: 28 ttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtgggtccg 87 ||||| |||||||||||||||||| | | |||||||| ||||| ||||| || || Sbjct: 16264981 ttctccacggcgtggaaccagaacacggcgctcgacacgctctacgtctgcgtcggcccc 16265040 Query: 88 tccttctccgncgccaagccgntggagatctacgccatc 126 |||||| || || ||||||| | |||||||||||||| Sbjct: 16265041 tccttcagcgccgacaagccgctccagatctacgccatc 16265079
>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete sequence Length = 135585 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 268 cacaagaacctctacatcatggaggacgccgaggtcggggagttcagcgaaggtacggtg 327 ||||||||||| ||| ||||||||||||||| ||||| |||||| || | | |||| Sbjct: 63237 cacaagaacctgtacgtcatggaggacgccgccgtcggcgagttcggcaccagcaaggtg 63296 Query: 328 acgcggctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 ||||| |||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 63297 acgcgcctcaccagcggcgcgtggacggacacccactgcagctggtcg 63344 Score = 42.1 bits (21), Expect = 1.4 Identities = 79/99 (79%) Strand = Plus / Plus Query: 28 ttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtgggtccg 87 ||||| |||||||||||||||||| | | |||||||| ||||| ||||| || || Sbjct: 62997 ttctccacggcgtggaaccagaacacggcgctcgacacgctctacgtctgcgtcggcccc 63056 Query: 88 tccttctccgncgccaagccgntggagatctacgccatc 126 |||||| || || ||||||| | |||||||||||||| Sbjct: 63057 tccttcagcgccgacaagccgctccagatctacgccatc 63095
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 268 cacaagaacctctacatcatggaggacgccgaggtcggggagttcagcgaaggtacggtg 327 ||||||||||| ||| ||||||||||||||| ||||| |||||| || | | |||| Sbjct: 16258854 cacaagaacctgtacgtcatggaggacgccgccgtcggcgagttcggcaccagcaaggtg 16258913 Query: 328 acgcggctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 ||||| |||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 16258914 acgcgcctcaccagcggcgcgtggacggacacccactgcagctggtcg 16258961 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 11239104 caagaacctgtacataatggaggacgccga 11239133 Score = 42.1 bits (21), Expect = 1.4 Identities = 79/99 (79%) Strand = Plus / Plus Query: 28 ttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtgggtccg 87 ||||| |||||||||||||||||| | | |||||||| ||||| ||||| || || Sbjct: 16258614 ttctccacggcgtggaaccagaacacggcgctcgacacgctctacgtctgcgtcggcccc 16258673 Query: 88 tccttctccgncgccaagccgntggagatctacgccatc 126 |||||| || || ||||||| | |||||||||||||| Sbjct: 16258674 tccttcagcgccgacaagccgctccagatctacgccatc 16258712
>dbj|AK111515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E06, full insert sequence Length = 2363 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 268 cacaagaacctctacatcatggaggacgccgaggtcggggagttcagcgaaggtacggtg 327 ||||||||||| ||| ||||||||||||||| ||||| |||||| || | | |||| Sbjct: 1632 cacaagaacctgtacgtcatggaggacgccgccgtcggcgagttcggcaccagcaaggtg 1691 Query: 328 acgcggctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 ||||| |||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 1692 acgcgcctcaccagcggcgcgtggacggacacccactgcagctggtcg 1739 Score = 42.1 bits (21), Expect = 1.4 Identities = 79/99 (79%) Strand = Plus / Plus Query: 28 ttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtgggtccg 87 ||||| |||||||||||||||||| | | |||||||| ||||| ||||| || || Sbjct: 1392 ttctccacggcgtggaaccagaacacggcgctcgacacgctctacgtctgcgtcggcccc 1451 Query: 88 tccttctccgncgccaagccgntggagatctacgccatc 126 |||||| || || ||||||| | |||||||||||||| Sbjct: 1452 tccttcagcgccgacaagccgctccagatctacgccatc 1490
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 333 gctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 13930780 gctcaccgacggcccctggaccgacacccactgcagctggtcg 13930738 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Minus Query: 24 cgtcttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtggg 83 ||||||||| ||| |||||||||||||| |||| ||||||||| ||||| |||| ||| Sbjct: 13931089 cgtcttctccacgtcgtggaaccagaacgacgacctggacacgctctacgtctgcgaggg 13931030 Query: 84 tccgtccttctc 95 ||| ||||||| Sbjct: 13931029 gccggccttctc 13931018 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cacaagaacctctacatcat 287 |||||||||||||||||||| Sbjct: 13930836 cacaagaacctctacatcat 13930817
>dbj|AK110931.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F10, full insert sequence Length = 2745 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 333 gctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1760 gctcaccgacggcccctggaccgacacccactgcagctggtcg 1802 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 24 cgtcttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtggg 83 ||||||||| ||| |||||||||||||| |||| ||||||||| ||||| |||| ||| Sbjct: 1451 cgtcttctccacgtcgtggaaccagaacgacgacctggacacgctctacgtctgcgaggg 1510 Query: 84 tccgtccttctc 95 ||| ||||||| Sbjct: 1511 gccggccttctc 1522 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cacaagaacctctacatcat 287 |||||||||||||||||||| Sbjct: 1704 cacaagaacctctacatcat 1723
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 333 gctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 13885060 gctcaccgacggcccctggaccgacacccactgcagctggtcg 13885018 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Minus Query: 24 cgtcttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtggg 83 ||||||||| ||| |||||||||||||| |||| ||||||||| ||||| |||| ||| Sbjct: 13885369 cgtcttctccacgtcgtggaaccagaacgacgacctggacacgctctacgtctgcgaggg 13885310 Query: 84 tccgtccttctc 95 ||| ||||||| Sbjct: 13885309 gccggccttctc 13885298 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cacaagaacctctacatcat 287 |||||||||||||||||||| Sbjct: 13885116 cacaagaacctctacatcat 13885097
>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144552 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 333 gctcaccgacgggccgtggaccgacacccactgcagctggtcg 375 |||||||||||| || ||||||||||||||||||||||||||| Sbjct: 67408 gctcaccgacggcccctggaccgacacccactgcagctggtcg 67366 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Minus Query: 24 cgtcttctcgacggcgtggaaccagaaccccgacaaggacacgctgtacgtgtgcgtggg 83 ||||||||| ||| |||||||||||||| |||| ||||||||| ||||| |||| ||| Sbjct: 67717 cgtcttctccacgtcgtggaaccagaacgacgacctggacacgctctacgtctgcgaggg 67658 Query: 84 tccgtccttctc 95 ||| ||||||| Sbjct: 67657 gccggccttctc 67646 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cacaagaacctctacatcat 287 |||||||||||||||||||| Sbjct: 67464 cacaagaacctctacatcat 67445
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 21294 caagaacctgtacataatggaggacgccga 21323
>dbj|AB230334.1| Aspergillus oryzae cDNA, contig sequence: AoEST7223 Length = 554 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 cgccgaggtcggggagttcagc 315 |||||||||||||||||||||| Sbjct: 49 cgccgaggtcggggagttcagc 28
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 cgccgaggtcggggagttcagc 315 |||||||||||||||||||||| Sbjct: 68556 cgccgaggtcggggagttcagc 68535
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 38707 caagaacctgtacataatggaggacgccga 38678
>gb|AY623594.1| Zagella sp. D0794 28S ribosomal RNA gene, partial sequence Length = 966 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623593.1| Zagella sp. D0771 28S ribosomal RNA gene, partial sequence Length = 967 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623592.1| Zaga sp. D0797 28S ribosomal RNA gene, partial sequence Length = 966 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623591.1| Zaga sp. D0774 28S ribosomal RNA gene, partial sequence Length = 967 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623590.1| Ufens nr. beneficus D0744 voucher UCR D0744 28S ribosomal RNA gene, partial sequence Length = 968 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623589.1| Ufens nr. beneficus D0889 voucher UCR D0889 28S ribosomal RNA gene, partial sequence Length = 968 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623586.1| Lathromeroidea sp. D0801 28S ribosomal RNA gene, partial sequence Length = 963 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 338 acgggccgtggaccgacaccca 317
>gb|AY623585.1| Lathromeroidea sp. D0783 28S ribosomal RNA gene, partial sequence Length = 990 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 341 acgggccgtggaccgacaccca 320
>gb|AY623579.1| Uscana sp. D0891 28S ribosomal RNA gene, partial sequence Length = 967 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623578.1| Chaetostricha sp. D0892 28S ribosomal RNA gene, partial sequence Length = 968 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623577.1| Chaetostricha sp. D0887 28S ribosomal RNA gene, partial sequence Length = 969 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623576.1| Chaetostricha sp. D1232 28S ribosomal RNA gene, partial sequence Length = 970 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623574.1| Pterygogramma sp. D0798 28S ribosomal RNA gene, partial sequence Length = 992 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 343 acgggccgtggaccgacaccca 322
>gb|AY623573.1| Pterygogramma sp. D0785 28S ribosomal RNA gene, partial sequence Length = 964 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 340 acgggccgtggaccgacaccca 319
>gb|AY623572.1| Paracentrobia nr. acuminata D0847 voucher UCR D0847 28S ribosomal RNA gene, partial sequence Length = 958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623571.1| Ittysella sp. D0747 28S ribosomal RNA gene, partial sequence Length = 960 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623570.1| Ittysella sp. D0846 28S ribosomal RNA gene, partial sequence Length = 960 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623569.1| Ittysella sp. D0845 28S ribosomal RNA gene, partial sequence Length = 960 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623568.1| Paracentrobia sp. D0844 28S ribosomal RNA gene, partial sequence Length = 958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623567.1| Paracentrobia sp. D0843 28S ribosomal RNA gene, partial sequence Length = 967 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623566.1| Paracentrobia sp. D0842 28S ribosomal RNA gene, partial sequence Length = 958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623565.1| Paracentrobia sp. D0878 28S ribosomal RNA gene, partial sequence Length = 958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623563.1| Paracentrobia sp. D1384 28S ribosomal RNA gene, partial sequence Length = 958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623562.1| Ittysella lagunera voucher UCR D1040 28S ribosomal RNA gene, partial sequence Length = 960 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 339 acgggccgtggaccgacaccca 318
>gb|AY623530.1| Ufens sp. D0754 28S ribosomal RNA gene, partial sequence Length = 963 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623528.1| Aphelinoidea sp. D0761 28S ribosomal RNA gene, partial sequence Length = 964 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 338 acgggccgtggaccgacaccca 317
>gb|AY623527.1| Aphelinoidea sp. D1205 28S ribosomal RNA gene, partial sequence Length = 962 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 338 acgggccgtggaccgacaccca 317
>gb|AY623520.1| Pintoa nearctica voucher UCR D0773 28S ribosomal RNA gene, partial sequence Length = 966 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>gb|AY623506.1| Australufens sp. D0787 28S ribosomal RNA gene, partial sequence Length = 964 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 acgggccgtggaccgacaccca 362 |||||||||||||||||||||| Sbjct: 337 acgggccgtggaccgacaccca 316
>dbj|AK102644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100G21, full insert sequence Length = 2495 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 1613 caagaacctgtacataatggaggacgccga 1642
>dbj|AK065474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F11, full insert sequence Length = 2495 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 1613 caagaacctgtacataatggaggacgccga 1642
>dbj|AK061751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G10, full insert sequence Length = 1763 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 caagaacctctacatcatggaggacgccga 299 ||||||||| ||||| |||||||||||||| Sbjct: 933 caagaacctgtacataatggaggacgccga 962
>gb|AY703584.1| Myrcidris epicharis 28S ribosomal RNA gene, partial sequence Length = 1873 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 591 cgggccgtggaccgacaccca 571
>gb|AY703582.1| Tetraponera rufonigra 28S ribosomal RNA gene, partial sequence Length = 1892 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703581.1| Tetraponera punctulata 28S ribosomal RNA gene, partial sequence Length = 1901 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 590 cgggccgtggaccgacaccca 570
>gb|AY703580.1| Tetraponera pilosa 28S ribosomal RNA gene, partial sequence Length = 1885 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703578.1| Tetraponera ophthalmica 28S ribosomal RNA gene, partial sequence Length = 1861 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 589 cgggccgtggaccgacaccca 569
>gb|AY703576.1| Tetraponera natalensis 28S ribosomal RNA gene, partial sequence Length = 1940 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 590 cgggccgtggaccgacaccca 570
>gb|AY703575.1| Tetraponera morondaviensis 28S ribosomal RNA gene, partial sequence Length = 1817 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703574.1| Tetraponera grandidieri 28S ribosomal RNA gene, partial sequence Length = 1862 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703573.1| Tetraponera clypeata 28S ribosomal RNA gene, partial sequence Length = 1841 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703572.1| Tetraponera caffra 28S ribosomal RNA gene, partial sequence Length = 1938 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 589 cgggccgtggaccgacaccca 569
>gb|AY703571.1| Tetraponera ambigua 28S ribosomal RNA gene, partial sequence Length = 1869 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703570.1| Tetraponera allaborans 28S ribosomal RNA gene, partial sequence Length = 1815 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY703569.1| Tetraponera aethiops 28S ribosomal RNA gene, partial sequence Length = 1885 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 588 cgggccgtggaccgacaccca 568
>gb|AY218331.1|AY218330S2 Tetraponera rufonigra 28S ribosomal RNA gene, partial sequence Length = 512 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 215 cgggccgtggaccgacaccca 195
>gb|DQ353583.1| Tetraponera sp. CSM-2006 28S ribosomal RNA gene, partial sequence Length = 1180 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 578 cgggccgtggaccgacaccca 558
>gb|DQ401025.1| Tetraponera aethiops voucher CASENT0501761 28S ribosomal RNA gene, partial sequence Length = 1191 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 575 cgggccgtggaccgacaccca 555
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 gccaagccgntggagatctacgccatct 127 ||||||||| ||||| |||||||||||| Sbjct: 1282505 gccaagccggtggaggtctacgccatct 1282478
>gb|AY623597.1| Zagella spirita voucher UCR D0757 28S ribosomal RNA gene, partial sequence Length = 968 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 336 cgggccgtggaccgacaccca 316
>gb|AY623596.1| Zagella sp. D0758 28S ribosomal RNA gene, partial sequence Length = 968 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 336 cgggccgtggaccgacaccca 316
>gb|AY623595.1| Zagella spirita voucher UCR D0795 28S ribosomal RNA gene, partial sequence Length = 969 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 336 cgggccgtggaccgacaccca 316
>gb|AY623588.1| Nr. Lathromeroidea sp. D0778 28S ribosomal RNA gene, partial sequence Length = 982 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 339 cgggccgtggaccgacaccca 319
>gb|AY623583.1| Kyuwia zuria voucher UCR D0751 28S ribosomal RNA gene, partial sequence Length = 970 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 336 cgggccgtggaccgacaccca 316
>gb|AY623580.1| Trichogrammatidae sp. D1208 28S ribosomal RNA gene, partial sequence Length = 970 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 336 cgggccgtggaccgacaccca 316
>gb|AY623507.1| Brachyia sp. D0789 28S ribosomal RNA gene, partial sequence Length = 965 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 336 cgggccgtggaccgacaccca 316
>gb|AY623500.1| Haeckeliania sp. D1240 28S ribosomal RNA gene, partial sequence Length = 968 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 337 cgggccgtggaccgacaccca 317
>gb|AY623488.1| Neobrachistella sp. D1202 28S ribosomal RNA gene, partial sequence Length = 959 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 337 cgggccgtggaccgacaccca 317
>gb|AY599350.1| Signiphora sp. D1027 28S ribosomal RNA gene, partial sequence Length = 996 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 352 cgggccgtggaccgacaccca 332
>gb|AY599349.1| Signiphora sp D0832 28S ribosomal RNA gene, partial sequence Length = 1021 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 359 cgggccgtggaccgacaccca 339
>gb|AY599346.1| Signiphora sp. D0829 28S ribosomal RNA gene, partial sequence Length = 1000 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 358 cgggccgtggaccgacaccca 338
>gb|AY599345.1| Signiphora sp. D0817 28S ribosomal RNA gene, partial sequence Length = 1001 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 357 cgggccgtggaccgacaccca 337
>gb|AY599344.1| Signiphora sp. D0538 28S ribosomal RNA gene, partial sequence Length = 1019 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 357 cgggccgtggaccgacaccca 337
>gb|AY599343.1| Signiphora sp. D0536 28S ribosomal RNA gene, partial sequence Length = 1013 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 357 cgggccgtggaccgacaccca 337
>gb|AY599342.1| Signiphora sp. D0526 28S ribosomal RNA gene, partial sequence Length = 993 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 352 cgggccgtggaccgacaccca 332
>gb|AY599341.1| Signiphora sp. D0516 28S ribosomal RNA gene, partial sequence Length = 1001 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccca 362 ||||||||||||||||||||| Sbjct: 357 cgggccgtggaccgacaccca 337
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgacaaggacacgctgtacg 73 |||||||||||||||||||| Sbjct: 2050812 cgacaaggacacgctgtacg 2050831
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgacaaggacacgctgtacg 73 |||||||||||||||||||| Sbjct: 1029487 cgacaaggacacgctgtacg 1029468 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ccgacaaggacacgctgtac 72 |||||||||||||||||||| Sbjct: 570735 ccgacaaggacacgctgtac 570754
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ccgacaaggacacgctgtac 72 |||||||||||||||||||| Sbjct: 3204035 ccgacaaggacacgctgtac 3204016 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgacaaggacacgctgtacg 73 |||||||||||||||||||| Sbjct: 2536204 cgacaaggacacgctgtacg 2536223
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgacaaggacacgctgtacg 73 |||||||||||||||||||| Sbjct: 890699 cgacaaggacacgctgtacg 890680
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ccgacaaggacacgctgtac 72 |||||||||||||||||||| Sbjct: 2933901 ccgacaaggacacgctgtac 2933882 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgacaaggacacgctgtacg 73 |||||||||||||||||||| Sbjct: 1846307 cgacaaggacacgctgtacg 1846288
>gb|AY623581.1| Uscana sp. D0791 28S ribosomal RNA gene, partial sequence Length = 986 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gggccgtggaccgacaccca 362 |||||||||||||||||||| Sbjct: 336 gggccgtggaccgacaccca 317
>ref|XM_308028.2| Anopheles gambiae str. PEST ENSANGP00000019400 (ENSANGG00000016911), partial mRNA Length = 204 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ggacacgctgtacgtgtgcg 79 |||||||||||||||||||| Sbjct: 102 ggacacgctgtacgtgtgcg 121
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgacaaggacacgctgtacg 73 |||||||||||||||||||| Sbjct: 2601185 cgacaaggacacgctgtacg 2601166 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ccgacaaggacacgctgtac 72 |||||||||||||||||||| Sbjct: 1940599 ccgacaaggacacgctgtac 1940618
>emb|Z97928.1|PSZ97928 Phaenolobus sp. 28S rRNA gene, D2 variable region Length = 406 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cgggccgtggaccgacaccc 361 |||||||||||||||||||| Sbjct: 185 cgggccgtggaccgacaccc 166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,491,797 Number of Sequences: 3902068 Number of extensions: 1491797 Number of successful extensions: 26119 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25701 Number of HSP's gapped (non-prelim): 418 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)