ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5k17 |
|---|---|
| Clone Library Name | barley_pub |
>RL4_CLOPE (Q8XHS4) 50S ribosomal protein L4| Length = 204 Score = 33.5 bits (75), Expect = 0.51 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 340 QGKLTFPQWIKGGEAMAPVVAPTGGTV--LVRKLATLSPKELFVGDIVLLKD 489 QG + PQWIKGG AP ++ +RK+A S V D+V+L+D Sbjct: 75 QGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVADMVVLED 126
>STP9_ARATH (Q9SX48) Sugar transport protein 9 (Hexose transporter 9)| Length = 517 Score = 32.7 bits (73), Expect = 0.87 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 356 KVSLPWKKLFQMASVISVLLICPTVYFFQE 267 KV PWK +FQ A L+ C + FFQ+ Sbjct: 268 KVDNPWKNIFQQAKYRPALVFCSAIPFFQQ 297
>ABTB2_RAT (O08764) Ankyrin repeat and BTB/POZ domain-containing protein 2| (Confluent 3Y1 cell-associated protein) (CCA3) Length = 1009 Score = 32.0 bits (71), Expect = 1.5 Identities = 26/85 (30%), Positives = 35/85 (41%) Frame = +3 Query: 297 QQH*DDRCHLEELLPGQAHLPAVDQRGRSHGPCRCSHRRNRPRQKARYFIPKRTLCWGHR 476 QQ D LEE+L +G S GP R S R + Q+A Y+ + H Sbjct: 673 QQAKADVLSLEEILAEGVEESDTSSQGSSEGPVRLSRTRTKALQEAMYYSAE------HG 726 Query: 477 LVEGPREIR*FNCPATGLPCKAMRW 551 V+ E+R A G+P K W Sbjct: 727 YVDITMELR-----ALGVPWKLHIW 746
>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related| protein E74B) Length = 883 Score = 31.6 bits (70), Expect = 1.9 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = -1 Query: 542 SLARQASRRTIKSSDFSGSFNKTMSPTKSSFGDK----VASFLTRTVPPVGATTGAMASP 375 SL +S + SS S S + + S + SS VAS +T T PP A A ASP Sbjct: 22 SLVNVSSSSSSSSSSSSSSLSLSSSSSSSSLSSATPTPVASPVTPTSPPPAAAAPAEASP 81 Query: 374 P 372 P Sbjct: 82 P 82
>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)| Length = 1759 Score = 31.2 bits (69), Expect = 2.5 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 395 TGAMASPPLIHCGKVSLPWK 336 + + A PPL+HC SLPWK Sbjct: 271 SASAAIPPLVHCSDKSLPWK 290
>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor| Length = 317 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -1 Query: 548 SHSLARQASRRTIKSSDFSGSFNKTM---SPTKSSFGDKVASFLTRTVPPVGATTGAMAS 378 S S + +S + KSS S S +K+ S +KSS +SF+T T P +++GA+ S Sbjct: 184 SSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVS 243
>ABTB2_MOUSE (Q7TQI7) Ankyrin repeat and BTB/POZ domain-containing protein 2| Length = 1024 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/85 (29%), Positives = 35/85 (41%) Frame = +3 Query: 297 QQH*DDRCHLEELLPGQAHLPAVDQRGRSHGPCRCSHRRNRPRQKARYFIPKRTLCWGHR 476 QQ D LEE+L +G S GP R S R + Q+A Y+ + H Sbjct: 674 QQAKADVLSLEEILAEGVEESDTSSQGSSEGPVRLSRTRTKALQEAMYYSAE------HG 727 Query: 477 LVEGPREIR*FNCPATGLPCKAMRW 551 ++ E+R A G+P K W Sbjct: 728 YLDITMELR-----ALGVPWKLHIW 747
>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)| Length = 1755 Score = 30.8 bits (68), Expect = 3.3 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -1 Query: 383 ASPPLIHCGKVSLPWK 336 A PPL+HC SLPWK Sbjct: 275 AIPPLVHCADKSLPWK 290
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 27.7 bits (60), Expect(2) = 4.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 123 RGDQGSGRRRKKGEVLERGTAEGDEEQDG 209 RG + G +R++ E E A+ +EE+DG Sbjct: 315 RGGRRRGGKRRRAEGTEAAAADAEEEEDG 343 Score = 21.2 bits (43), Expect(2) = 4.0 Identities = 8/16 (50%), Positives = 8/16 (50%) Frame = +1 Query: 13 PSPSPAPVREAASPPP 60 PSP P P PPP Sbjct: 274 PSPPPRPPPPLPPPPP 289
>COAT_BPGA (P07234) Coat protein| Length = 129 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +1 Query: 181 LQRATRSRMVSLSTWFRYA-AHKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTF 357 L +RS+ ++ +R + A K +Y+I L K +N E+ + WK++ LT Sbjct: 32 LSNNSRSQAYRVTASYRASGADKRKYAIKLEVPKIVTQVVNGVELPGSAWKAYASIDLTI 91 Query: 358 P 360 P Sbjct: 92 P 92
>NHR7_CAEEL (Q20765) Nuclear hormone receptor family member nhr-7| Length = 536 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Frame = -1 Query: 605 PSIRPCQVQRAHPSHQ*RPSHSLARQASRRTIKSSDFSGSFNKTMSPTKSSFGDKVASFL 426 PS+ PCQ+ P Q +S S SS F + P S K+ + Sbjct: 424 PSLSPCQISAPPPPQQQYTDYSQMPSTSSYPANSSPFQSPYR----PNSLSSFPKIPLEM 479 Query: 425 TRTVP----PVGATTGAMASP 375 T+++ P G TT M P Sbjct: 480 TKSIEEFLRPNGMTTDEMNKP 500
>KGUA_STRP8 (P65223) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 211 Score = 29.6 bits (65), Expect = 7.4 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 Query: 241 HKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTFPQWIKGGEAM 387 HKFEYS+S++ + G+++ + FF+ + F + IK G+ + Sbjct: 31 HKFEYSVSMTTRPQRPGEVDGVDY-------FFRTREEFEELIKTGQML 72
>KGUA_STRP6 (Q5XAP1) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 211 Score = 29.6 bits (65), Expect = 7.4 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 Query: 241 HKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTFPQWIKGGEAM 387 HKFEYS+S++ + G+++ + FF+ + F + IK G+ + Sbjct: 31 HKFEYSVSMTTRPQRPGEVDGVDY-------FFRTREEFEELIKTGQML 72
>KGUA_STRP3 (P65222) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 211 Score = 29.6 bits (65), Expect = 7.4 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 Query: 241 HKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTFPQWIKGGEAM 387 HKFEYS+S++ + G+++ + FF+ + F + IK G+ + Sbjct: 31 HKFEYSVSMTTRPQRPGEVDGVDY-------FFRTREEFEELIKTGQML 72
>KGUA_STRP1 (Q99YM5) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 211 Score = 29.6 bits (65), Expect = 7.4 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 Query: 241 HKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTFPQWIKGGEAM 387 HKFEYS+S++ + G+++ + FF+ + F + IK G+ + Sbjct: 31 HKFEYSVSMTTRPQRPGEVDGVDY-------FFRTREEFEELIKTGQML 72
>KGUA_STRMU (Q8DVK6) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 210 Score = 29.6 bits (65), Expect = 7.4 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +1 Query: 241 HKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTFPQWIKGGEAM 387 H+FEYS+S++ + +G+I+ + FF+ + F + IK G+ + Sbjct: 31 HQFEYSVSMTTRPQRLGEIDGVDY-------FFRTREEFEELIKQGQML 72
>PCDAA_PANTR (Q5DRF4) Protocadherin alpha 10 precursor (PCDH-alpha10)| Length = 948 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 442 LSPKELFVGDIVLLKDPEKSDDLIVRRLACR 534 LSP E FV DI+ KD +K L++R+L R Sbjct: 171 LSPNEYFVLDIINKKDKDKFPVLVLRKLLDR 201
>PCDAA_HUMAN (Q9Y5I2) Protocadherin alpha 10 precursor (PCDH-alpha10)| Length = 948 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 442 LSPKELFVGDIVLLKDPEKSDDLIVRRLACR 534 LSP E FV DI+ KD +K L++R+L R Sbjct: 171 LSPNEYFVLDIINKKDKDKFPVLVLRKLLDR 201
>PUR2_DROME (P00967) Trifunctional purine biosynthetic protein adenosine-3| [Includes: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase); Phosphoribosylformylglycinamidin Length = 1353 Score = 29.3 bits (64), Expect = 9.7 Identities = 29/104 (27%), Positives = 45/104 (43%) Frame = +1 Query: 229 RYAAHKFEYSISLSWKKYTVGQINSTEMTDAIWKSFFQGKLTFPQWIKGGEAMAPVVAPT 408 R A+KF+ +W G I+STE+ + G M VVAPT Sbjct: 1058 RLDANKFQLPPVFAWLA-AAGNISSTELQ---------------RTYNCGLGMVLVVAPT 1101 Query: 409 GGTVLVRKLATLSPKELFVGDIVLLKDPEKSDDLIVRRLACRAR 540 ++++L + VG++V KDP+KS ++ A AR Sbjct: 1102 EVEDVLKELR-YPQRAAVVGEVVARKDPKKSQVVVQNFEASLAR 1144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,757,412 Number of Sequences: 219361 Number of extensions: 1548511 Number of successful extensions: 7106 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6032 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7061 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
