Clone Information

BLAST Search Result

Clone Name	bags5k16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (C...	131	2e-30
2	PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Pro...	117	2e-26
3	A33_PLEWA (Q02084) Zinc-binding protein A33	43	7e-04
4	NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)	42	0.002
5	NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)	41	0.003
6	TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger pro...	41	0.003
7	STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein...	41	0.003
8	STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein...	41	0.003
9	STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein...	40	0.004
10	RO52_HUMAN (P19474) 52 kDa Ro protein (Sjoegren syndrome type A ...	39	0.013
11	UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquiti...	39	0.013
12	RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 ...	39	0.017
13	UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquiti...	39	0.017
14	RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 ...	39	0.017
15	TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger prot...	38	0.022
16	TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger pr...	38	0.029
17	TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger pr...	38	0.029
18	COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (...	37	0.038
19	TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger pr...	37	0.049
20	TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger prot...	37	0.049
21	TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger pr...	37	0.049
22	TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger prot...	37	0.049
23	TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger pr...	37	0.049
24	UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4	37	0.049
25	RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein li...	37	0.065
26	TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger pro...	36	0.084
27	RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A ...	36	0.084
28	TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger pr...	35	0.25
29	TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger pr...	34	0.32
30	TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger pr...	34	0.32
31	RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein li...	34	0.42
32	COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Co...	33	0.71
33	TRI10_PIG (O19085) Tripartite motif protein 10 (RING finger prot...	33	0.71
34	TRI10_MOUSE (Q9WUH5) Tripartite motif protein 10 (RING finger pr...	33	0.93
35	TRI17_MOUSE (Q7TPM3) Tripartite motif protein 17	33	0.93
36	TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6	32	1.2
37	RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugati...	32	1.2
38	TRI17_RAT (Q9WV59) Tripartite motif protein 17 (Testis RING fing...	32	1.2
39	TRI17_HUMAN (Q9Y577) Tripartite motif protein 17 (Testis RING fi...	32	1.2
40	RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein li...	32	1.2
41	TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger pr...	32	1.6
42	TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)	32	2.1
43	TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (R...	32	2.1
44	HGD_BURPS (Q63RD3) Homogentisate 1,2-dioxygenase (EC 1.13.11.5) ...	31	2.7
45	HGD_BURP1 (Q3JPA3) Homogentisate 1,2-dioxygenase (EC 1.13.11.5) ...	31	2.7
46	HGD_BURMA (Q62I34) Homogentisate 1,2-dioxygenase (EC 1.13.11.5) ...	31	2.7
47	GRPE_ACHLA (Q8L399) Protein grpE (HSP-70 cofactor)	31	2.7
48	RNF5_CAEEL (Q09463) RING finger protein 5	31	2.7
49	UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin f...	31	3.5
50	TRAF6_MOUSE (P70196) TNF receptor-associated factor 6	31	3.5
51	CP21A_MOUSE (P03940) Cytochrome P450 21 (EC 1.14.99.10) (Cytochr...	30	4.6
52	TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-inte...	30	4.6
53	TRAF4_HUMAN (Q9BUZ4) TNF receptor-associated factor 4 (Cysteine-...	30	7.9
54	OB57E_DROME (Q9V938) General odorant-binding protein 57e precursor	30	7.9

>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score =  131 bits (329), Expect = 2e-30
 Identities = 80/211 (37%), Positives = 110/211 (52%), Gaps = 4/211 (1%)
 Frame = +3

Query: 18  VDLVRGQLKREMEKKGALDLNIFSKIHDILAHHVDNVGSQSEEPNSQPETLPLENVSSDH 197
           V+LV  QLKR  E+   +D+      +D+L+ +  N    +E        L +    S+ 
Sbjct: 152 VELVHAQLKRAKER---IDMPDDEFYNDLLSVYDKNYDPSAE--------LAILGRLSEK 200

Query: 198 LELQHVALLXXXXXXXXXXXXXXXXXELIEELENTTVAVSAKPTNGDGQTSDEAKDSPDK 377
           L L  +  L                 +  E +E  ++ +         Q  D       +
Sbjct: 201 LHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASR 260

Query: 378 VKKSD----TVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQK 545
           V  S+     + +P++FRCPISL+LM+DPVIVSTGQTYERA I++WI  G+ TCP TQQK
Sbjct: 261 VLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQK 320

Query: 546 LQNLTLTPNYVLRSLILQWCEEKGIEPPTRS 638
           +    LTPNYVLRSLI QWCE  G+EPP RS
Sbjct: 321 MSTSALTPNYVLRSLISQWCETNGMEPPKRS 351

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>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box|
           domain protein 14)
          Length = 632

 Score =  117 bits (294), Expect = 2e-26
 Identities = 53/84 (63%), Positives = 67/84 (79%)
 Frame = +3

Query: 378 VKKSDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNL 557
           V +  +  +PE FRCPISL+LM+DPVIVSTGQTYER+ IQ+W+D G++TCPK+Q+ L + 
Sbjct: 240 VSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 299

Query: 558 TLTPNYVLRSLILQWCEEKGIEPP 629
            LTPNYVL+SLI  WCE  GIE P
Sbjct: 300 GLTPNYVLKSLIALWCESNGIELP 323

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>A33_PLEWA (Q02084) Zinc-binding protein A33|
          Length = 624

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
 Frame = +3

Query: 285 EELENTTVAVSAKPTNGDGQTSDEAK------DSPDKVKKSDTVA--MPEDFRCPISLDL 440
           EEL NT    +      +G+ +   K      D   K +K D       ED  CP+   L
Sbjct: 109 EELNNTEDETNGVSDQSEGKAARSNKRKIEDGDGDQKKRKVDDEEDDFTEDLTCPLCRSL 168

Query: 441 MRDPVIVSTGQTYERAFIQR-WIDGGNRTCPKTQQKLQNLTLTPNYVLRSLI 593
            ++PVI+  G  + +  I + W      +CP+ ++ L     T N VL +L+
Sbjct: 169 FKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTERKYTTNRVLANLV 220

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>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)|
          Length = 610

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
 Frame = +3

Query: 351 DEAKDSPDKVKKSDTVA------------MPEDFRCPISLDLMRDPVIVSTGQTYERAFI 494
           +E +  P K K  D  A              E+  CP+ ++L +DPV+V+ G  + R+ I
Sbjct: 111 EEPEPEPKKAKVEDKDASKTAASLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCI 170

Query: 495 QR-WIDGGNRTCPKTQQKLQNLTLTPNYVLRSL 590
            + W    +  CP+ ++ + +   T N VL +L
Sbjct: 171 DKVWEGQSSFACPECKESITDRKYTINRVLANL 203

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>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)|
          Length = 609

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 408 EDFRCPISLDLMRDPVIVSTGQTYERAFIQR-WIDGGNRTCPKTQQKLQNLTLTPNYVLR 584
           E+  CP+ ++L +DPV+V+ G  + R+ I + W    +  CP+ ++ + +   T N VL 
Sbjct: 141 EELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESITDRKYTINRVLA 200

Query: 585 SL 590
           +L
Sbjct: 201 NL 202

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>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)|
          Length = 500

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 408 EDFRCPISLDLMRDPVIVSTGQTYERAFIQR-WIDGGNR-TCPKTQQKLQNLTLTPNYVL 581
           E+  CPI LD  +DPV +  G  + R  + R W  GG    CP+ +       L PN+ L
Sbjct: 8   EELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAALRPNWAL 67

Query: 582 RSL 590
             L
Sbjct: 68  ARL 70

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>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1) (Carboxy
           terminus of Hsp70-interacting protein) (E3 ubiquitin
           protein ligase CHIP)
          Length = 304

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 372 DKVKKSDTVAMPEDFRC-PISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKL 548
           +K KK D      D+ C  IS +LMR+P I  +G TY+R  I+  +       P T+  L
Sbjct: 221 EKRKKRDI----PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 276

Query: 549 QNLTLTPNYVLRSLILQWCEEKG 617
               L PN  ++ +I  +  E G
Sbjct: 277 TQEQLIPNLAMKEVIDAFISENG 299

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>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1) (Carboxy
           terminus of Hsp70-interacting protein) (E3 ubiquitin
           protein ligase CHIP) (CLL-associated antigen KW-8)
           (Antigen NY-C
          Length = 303

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 372 DKVKKSDTVAMPEDFRC-PISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKL 548
           +K KK D      D+ C  IS +LMR+P I  +G TY+R  I+  +       P T+  L
Sbjct: 220 EKRKKRDI----PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 275

Query: 549 QNLTLTPNYVLRSLILQWCEEKG 617
               L PN  ++ +I  +  E G
Sbjct: 276 TQEQLIPNLAMKEVIDAFISENG 298

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>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)|
           (STIP1 homology and U-box-containing protein 1)
          Length = 314

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 372 DKVKKSDTVAMPEDFRC-PISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKL 548
           +K KK D      D+ C  IS +LMR+P I  +G TY+R  I+  +       P T+  L
Sbjct: 231 EKRKKRDI----PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 286

Query: 549 QNLTLTPNYVLRSLILQWCEEKG 617
               L PN  ++ +I  +  E G
Sbjct: 287 TQDQLIPNLAMKEVIDAFISENG 309

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>RO52_HUMAN (P19474) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21) (RING finger
           protein 81)
          Length = 475

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 402 MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNLTLTPNYVL 581
           M E+  CPI LD   +PV +  G ++ +  I +   GG   CP  +Q+     L PN  L
Sbjct: 10  MWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNRQL 69

Query: 582 RSLI 593
            +++
Sbjct: 70  ANMV 73

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>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
            degradation protein 2) (Ufd2a)
          Length = 1173

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = +3

Query: 357  AKDSPDKVKKSDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKT 536
            AK++  ++  SD    P++FR P+   LM DPV + +G   +R+ I R +   + T P  
Sbjct: 1087 AKNARAEIDYSDA---PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFN 1142

Query: 537  QQKLQNLTLTPNYVLRSLILQWCEEK 614
            +Q L    L P   L+  I  W  EK
Sbjct: 1143 RQMLTESMLEPVPELKEQIQAWMREK 1168

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>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (mCOP1)
          Length = 733

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 411 DFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNLT-LTPNYVLRS 587
           DF CPI  D++ +  +   G ++    I + ++  NR CPK    + N+  L PN+++  
Sbjct: 135 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNR-CPKCNYVVDNIDHLYPNFLVNE 193

Query: 588 LILQ 599
           LIL+
Sbjct: 194 LILK 197

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>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
            degradation protein 2) (Homozygously deleted in
            neuroblastoma 1)
          Length = 1302

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = +3

Query: 357  AKDSPDKVKKSDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKT 536
            AK++  ++  SD    P++FR P+   LM DPV + +G   +R+ I R +   + T P  
Sbjct: 1216 AKNARAEIDYSDA---PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFN 1271

Query: 537  QQKLQNLTLTPNYVLRSLILQWCEEK 614
            +Q L    L P   L+  I  W  EK
Sbjct: 1272 RQTLTESMLEPVPELKEQIQAWMREK 1297

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>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 411 DFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNLT-LTPNYVLRS 587
           DF CPI  D++ +  +   G ++    I + ++  NR CPK    + N+  L PN+++  
Sbjct: 133 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNR-CPKCNYVVDNIDHLYPNFLVNE 191

Query: 588 LILQ 599
           LIL+
Sbjct: 192 LILK 195

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>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 542

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ--RWIDGGNRTCPKTQQKLQNLTLTPN 572
           ++ E+  C I LD +RDPV +  G  + R+     R I G    CP  ++  +   + P 
Sbjct: 9   SLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPV 68

Query: 573 YVLRSLI 593
           + L SL+
Sbjct: 69  WQLASLV 75

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>TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 539

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ--RWIDGGNRTCPKTQQKLQNLTLTPN 572
           ++ E+  C I LD +RDPV +  G  + R+     R I G    CP  ++  +   + P 
Sbjct: 9   SLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPV 68

Query: 573 YVLRSLI 593
           + L SL+
Sbjct: 69  WQLASLV 75

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>TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger protein 173)|
           (Acid finger protein) (AFP) (RING finger protein 95)
          Length = 539

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ--RWIDGGNRTCPKTQQKLQNLTLTPN 572
           ++ E+  C I LD +RDPV +  G  + R+     R I G    CP  ++  +   + P 
Sbjct: 9   SLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPV 68

Query: 573 YVLRSLI 593
           + L SL+
Sbjct: 69  WQLASLV 75

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>COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 675

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
 Frame = +3

Query: 282 IEELENTTVAVSAKP-----TNGDGQTSDEAKDSPDKVKKSDTVAMPEDFRCPISLDLMR 446
           +EE+    V  + KP     + G+G    E  D      +     + +D  CPI + +++
Sbjct: 1   MEEISTDPVVPAVKPDPRTSSVGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIK 60

Query: 447 DPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNLTLTPNYVLRSLI 593
           D  + + G ++    I   +      CP   Q L N  L PN++L  L+
Sbjct: 61  DAFLTACGHSFCYMCIITHL-RNKSDCPCCSQHLTNNQLYPNFLLDKLL 108

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>TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 518

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 420 CPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNR--TCPKTQQKLQNLTLTPNYVLRSLI 593
           C + L+ +++PVI+  G  + +A I RW +   R   CP  ++  +  +L PN  L S++
Sbjct: 29  CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRPNRQLGSMV 88

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>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)|
          Length = 488

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 420 CPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNR--TCPKTQQKLQNLTLTPNYVLRSLI 593
           C + L+ +++PVI+  G  + +A I RW +   R   CP  ++  +  +L PN  L S++
Sbjct: 29  CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRPNRQLGSMV 88

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>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 488

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 420 CPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNR--TCPKTQQKLQNLTLTPNYVLRSLI 593
           C + L+ +++PVI+  G  + +A I RW +   R   CP  ++  +  +L PN  L S++
Sbjct: 29  CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRPNRQLGSMV 88

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>TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ--RWIDGGNRTCPKTQQKLQNLTLTPN 572
           ++ E+  C I LD +RDPV +  G  + R+       + GG   CP  ++      + P 
Sbjct: 9   SLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPV 68

Query: 573 YVLRSLI 593
           + L SL+
Sbjct: 69  WQLASLV 75

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>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ--RWIDGGNRTCPKTQQKLQNLTLTPN 572
           ++ E+  C I LD +RDPV +  G  + R+     R I G    CP  ++  +   + P 
Sbjct: 9   SLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPV 68

Query: 573 YVLRSLI 593
           + L +L+
Sbjct: 69  WQLANLV 75

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>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4|
          Length = 980

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 22/71 (30%), Positives = 39/71 (54%)
 Frame = +3

Query: 402  MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNLTLTPNYVL 581
            +PE+F+ PI   +M DPV + +G   +RA I+R +       P  +  L +  L+P+  L
Sbjct: 906  VPEEFKDPIMDAIMVDPVKLPSGHVMDRAVIERHLLSTPNN-PFNRAPLSHNELSPDSEL 964

Query: 582  RSLILQWCEEK 614
            ++ I +W  +K
Sbjct: 965  KAKIQEWICQK 975

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>RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 344

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 381 KKSDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQKLQNLT 560
           K S    + E  RC I  +    P+I   G T+    IQR++   ++ CP   Q+ Q   
Sbjct: 15  KLSGLKDVDETLRCHICKEFFTAPMITGCGHTFCSLCIQRYLTNTSQRCPTCMQEQQISQ 74

Query: 561 LTPNYVLRSLI 593
           L  N  + +L+
Sbjct: 75  LRKNVTVETLV 85

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>TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger protein 89)|
          Length = 488

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
 Frame = +3

Query: 396 VAMPEDFRCPISLDLMRDPVIVSTGQTYERAFI----QRWIDG--GNRTCPKTQQKLQNL 557
           V + E+  CPI L+L+ +P+ +  G ++ +A I    +  + G  G R+CP  Q   Q  
Sbjct: 7   VDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPG 66

Query: 558 TLTPNYVLRSLI 593
            L PN  L +++
Sbjct: 67  NLRPNRHLANIV 78

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>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21)
          Length = 470

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +3

Query: 366 SPDKVKKSDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKTQQK 545
           SP    K     M E+  C I LD M +P+ +  G  + +  I      G  +CP+ +Q+
Sbjct: 2   SPSTTSKMSLEKMWEEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQ 61

Query: 546 LQNLTLTPNYVLRSLI 593
                L PN  + +++
Sbjct: 62  FLLRNLRPNRHIANMV 77

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>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50|
           kDa-stimulated trans-acting factor) (Staf-50)
          Length = 498

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = +3

Query: 396 VAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWI------DGGNRTCPKTQQKLQNL 557
           V + ++  CPI L+L+ +P+ +  G ++ +A I   I        G  +CP  Q + Q  
Sbjct: 7   VDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPG 66

Query: 558 TLTPNYVLRSLI 593
            L PN  L +++
Sbjct: 67  NLRPNRHLANIV 78

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>TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger protein 9)|
           (B30-RING finger protein)
          Length = 481

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +3

Query: 387 SDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWID------GGNRTCPKTQQKL 548
           +   ++ ++  CPI    +R+PV +  G  + RA + R+ +        + TCP  ++  
Sbjct: 5   ASVTSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPF 64

Query: 549 QNLTLTPNYVLRSLI 593
           +  +  PN+ L +++
Sbjct: 65  RPGSFRPNWQLANVV 79

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>TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger protein 9)|
           (B30-RING finger protein)
          Length = 481

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +3

Query: 387 SDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWID------GGNRTCPKTQQKL 548
           +   ++ ++  CPI    +R+PV +  G  + RA + R+ +        + TCP  ++  
Sbjct: 5   ASVTSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPF 64

Query: 549 QNLTLTPNYVLRSLI 593
           +  +  PN+ L +++
Sbjct: 65  RPGSFRPNWQLANVV 79

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>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 443

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +3

Query: 363 DSPDKVKKSDTVAMPED--FRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKT 536
           DS D +    T+  P +   RC +  D   +PVI S   T+    I+R +    + CP  
Sbjct: 9   DSTDWLDTPLTLLAPFETSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGK-CPTC 67

Query: 537 QQKLQNLTLTPNYVLRSLI 593
           +   Q L L  N+V++ L+
Sbjct: 68  RSSDQELKLRRNWVVQELV 86

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>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 672

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
 Frame = +3

Query: 360 KDSPDKVKKSDTVA------------MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRW 503
           K  P K   +DT A            + +DF CPI + +++D  + + G ++    I   
Sbjct: 15  KPEPSKNFSTDTTAAGTFLLVPTMSDLDKDFLCPICMQIIKDAFLTACGHSFCYMCIITH 74

Query: 504 IDGGNRTCPKTQQKLQNLTLTPNYVLRSLI 593
           +      CP     L N  L PN++L  L+
Sbjct: 75  L-RNKSDCPCCGHYLTNSNLFPNFLLDKLL 103

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>TRI10_PIG (O19085) Tripartite motif protein 10 (RING finger protein 9)|
           (B30-RING finger protein)
          Length = 482

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWID------GGNRTCPKTQQKLQNLT 560
           ++ ++  CPI    +R+PV +  G  +    + R+++      G   TCP  ++  +  +
Sbjct: 9   SLADEVNCPICQGTLREPVTIDCGHNFCCVCLTRYLEIPCLDPGELPTCPLCKEPFRPGS 68

Query: 561 LTPNYVLRSLI 593
             PN+ L S++
Sbjct: 69  FRPNWQLASVV 79

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>TRI10_MOUSE (Q9WUH5) Tripartite motif protein 10 (RING finger protein 9)|
           (Hematopoietic RING finger 1)
          Length = 489

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
 Frame = +3

Query: 399 AMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWID------GGNRTCPKTQQKLQNLT 560
           ++ ++  CPI    +R+PV +  G  + R  + R+ +        + +CP  ++  +  +
Sbjct: 9   SLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPESEESLSCPLCKEPFRPGS 68

Query: 561 LTPNYVLRSLI-----LQWCEEKGIE 623
             PN+ L +++     LQ    +G+E
Sbjct: 69  FRPNWQLANVVENIERLQLASTRGLE 94

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>TRI17_MOUSE (Q7TPM3) Tripartite motif protein 17|
          Length = 477

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = +3

Query: 402 MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ-RWIDG----------GNRTCPKTQQKL 548
           + E+  C I LD   DPV+ + G  + R  IQ  W  G          G+  CP+ ++  
Sbjct: 10  LQEEATCSICLDYFTDPVMTACGHNFCRECIQMSWEKGKVKKGKKKQKGSFPCPECREMS 69

Query: 549 QNLTLTPNYVLRSLILQWCEEKGIE 623
               L PN +L  +     +  G++
Sbjct: 70  PQRNLRPNRLLTKVAEMARQHPGLQ 94

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>TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6|
          Length = 488

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 396 VAMPEDFRCPISLDLMRDPVIVSTGQTYERAFI------QRWIDGGNRTCPKTQQKLQNL 557
           V + ++  CPI L+L+ +P+ +  G ++ +  I        +  GG  +CP  +   Q  
Sbjct: 7   VDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQPG 66

Query: 558 TLTPNYVLRSLI 593
            L PN  L +++
Sbjct: 67  NLRPNRHLAAIV 78

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>RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugating enzyme|
           7-interacting protein 5) (U-box domain-containing
           protein 5)
          Length = 541

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +3

Query: 294 ENTTVAVSAKPTNGDGQTSD--EAKDSPDKVKKSDTVA--MPEDFRCPISLDLMRDPVIV 461
           ++  +   A P   D    D  E++ +P  ++K   +   +PE+F  PI+L++M  P+++
Sbjct: 219 QDVALQAPALPMESDCDPGDQPESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLL 278

Query: 462 STGQTYERAFIQR 500
            +G+  +++ +++
Sbjct: 279 PSGKVIDQSTLEK 291

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>TRI17_RAT (Q9WV59) Tripartite motif protein 17 (Testis RING finger protein)|
          Length = 477

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
 Frame = +3

Query: 402 MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ-RWIDG----------GNRTCPKTQQKL 548
           + E+  C I LD   DPV+ + G  + R  IQ  W  G          G+  CP+ ++  
Sbjct: 10  LQEEATCSICLDYFTDPVMTACGHNFCRECIQMSWEKGKGKKGKKKQKGSFPCPECREMS 69

Query: 549 QNLTLTPNYVL 581
               L PN +L
Sbjct: 70  PQRNLRPNRLL 80

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>TRI17_HUMAN (Q9Y577) Tripartite motif protein 17 (Testis RING finger protein)|
           (RING finger protein 16)
          Length = 477

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = +3

Query: 402 MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQ-----------RWIDGGNRTCPKTQQKL 548
           + E+  C I LD   DPV+ + G  + RA IQ           R    G+  CP+ ++  
Sbjct: 10  LQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMS 69

Query: 549 QNLTLTPNYVLRSLILQWCEEKGIE 623
               L PN +L  +     +  G++
Sbjct: 70  PQRNLLPNRLLTKVAEMAQQHPGLQ 94

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>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 418

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +3

Query: 363 DSPDKVKKSDTVAMP--EDFRCPISLDLMRDPVIVSTGQTYERAFIQRWIDGGNRTCPKT 536
           DS D ++   ++  P     RC +  D   +PVI S   T+    I+R +    + CP  
Sbjct: 9   DSTDWLETPLSLVSPLESSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGK-CPAC 67

Query: 537 QQKLQNLTLTPNYVLRSLI 593
           +   Q L L  N+ ++ L+
Sbjct: 68  RSSDQELKLRRNWAVQELV 86

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>TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger protein 15) (Zinc|
           finger protein RoRet)
          Length = 465

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +3

Query: 387 SDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFI--------QRWIDGGNRTCPKTQQ 542
           + T  M E+  C I L LM +PV ++ G +Y    I        Q+ +      CP+ + 
Sbjct: 5   TSTKKMMEEATCSICLSLMTNPVSINCGHSYCHLCITDFFKNPSQKQLRQETFCCPQCRA 64

Query: 543 KLQNLTLTPNYVLRSLI 593
                +L PN  L SLI
Sbjct: 65  PFHMDSLRPNKQLGSLI 81

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>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)|
          Length = 467

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 402 MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQR-W-IDGGNRTCPKTQQKLQNLTLTPNY 575
           + E+  C I LD   DPV+   G  + R  I+R W    G   CP+ ++      L PN 
Sbjct: 10  LQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSAQRNLRPNR 69

Query: 576 VLRSL 590
            L  +
Sbjct: 70  PLAKM 74

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>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger|
           protein 92) (BIA1 protein)
          Length = 468

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 402 MPEDFRCPISLDLMRDPVIVSTGQTYERAFIQR-W-IDGGNRTCPKTQQKLQNLTLTPNY 575
           + E+  C I LD   DPV+   G  + R  I+R W    G   CP+ ++      L PN 
Sbjct: 10  LQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSPQRNLRPNR 69

Query: 576 VLRSL 590
            L  +
Sbjct: 70  PLAKM 74

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>HGD_BURPS (Q63RD3) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)|
           (Homogentisicase) (Homogentisate oxygenase)
           (Homogentisic acid oxidase)
          Length = 450

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 490 KARSYVCPVDTMTGSLIRSRDIGQRKSSGIATVSDFLT 377
           +AR YVC      G+L+R  D+G   S+G+A   DFLT
Sbjct: 209 RARGYVCE---NFGALLRLPDLGPIGSNGLANPRDFLT 243

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>HGD_BURP1 (Q3JPA3) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)|
           (Homogentisicase) (Homogentisate oxygenase)
           (Homogentisic acid oxidase)
          Length = 450

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 490 KARSYVCPVDTMTGSLIRSRDIGQRKSSGIATVSDFLT 377
           +AR YVC      G+L+R  D+G   S+G+A   DFLT
Sbjct: 209 RARGYVCE---NFGALLRLPDLGPIGSNGLANPRDFLT 243

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>HGD_BURMA (Q62I34) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)|
           (Homogentisicase) (Homogentisate oxygenase)
           (Homogentisic acid oxidase)
          Length = 450

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 490 KARSYVCPVDTMTGSLIRSRDIGQRKSSGIATVSDFLT 377
           +AR YVC      G+L+R  D+G   S+G+A   DFLT
Sbjct: 209 RARGYVCE---NFGALLRLPDLGPIGSNGLANPRDFLT 243

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>GRPE_ACHLA (Q8L399) Protein grpE (HSP-70 cofactor)|
          Length = 190

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 24  LVRGQLKREMEKKGALDLNIFSKIHDILAHHVDNVGSQSEEPN 152
           ++R Q K  +E +G +++    ++ D   HH     S  ++PN
Sbjct: 112 MIRDQFKSVLENEGVVEIKALGEVFDAKVHHAIEKESNKDKPN 154

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>RNF5_CAEEL (Q09463) RING finger protein 5|
          Length = 235

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 348 SDEAKDSPDKVKKSDTVAMPEDFRCPISLDLMRDPVIVSTGQTYERAFIQRWID--GGNR 521
           + E K   ++   S        F C I LD  +D V+   G  +    + +W+D    N+
Sbjct: 2   ASETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQ 61

Query: 522 TCPKTQQKLQNLTLTPNY 575
            CP  +  +    + P Y
Sbjct: 62  VCPVCKSAIDGNKVVPIY 79

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>UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin fusion|
            degradation protein 2) (UB fusion protein 2)
          Length = 961

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +3

Query: 402  MPEDFRCPISLDLMRDPVIV-STGQTYERAFIQRWIDGGNRTCPKTQQKLQNLTLTPNYV 578
            +P++F  P+   +M+DPVI+ ++    +R+ I+  +   + T P  +  L+   +TPN  
Sbjct: 881  VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 939

Query: 579  LRSLILQWCEEK 614
            LR  IL + ++K
Sbjct: 940  LRQKILCFKKQK 951

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>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6|
          Length = 530

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
 Frame = +3

Query: 303 TVAVSAKPTNGDGQTSDEAKDSPDKVKKSDTVAMP---EDFRCPISLDLMRDPVIVSTGQ 473
           + AV     +G   T + +    ++++  D    P     + CPI L  +R+ V    G 
Sbjct: 28  SAAVKDDSVSGSASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGH 87

Query: 474 TYERAFIQRWIDGGNRTCPKTQQKLQNLTLTPNYVLRSLILQW---CEEKG 617
            + +A I + I      CP   + L    L P+   +  IL     C  KG
Sbjct: 88  RFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLTVKCPNKG 138

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>CP21A_MOUSE (P03940) Cytochrome P450 21 (EC 1.14.99.10) (Cytochrome P450 XXI)|
           (Steroid 21-hydroxylase) (21-OHase) (P450-C21)
           (P-450c21)
          Length = 487

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 441 MRDPVIVSTGQTYERAFIQRWIDGGNR 521
           M+D V++++ +T E A IQ+W+D   R
Sbjct: 66  MQDVVVLNSNRTIEEALIQKWVDFAGR 92

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>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting|
           protein)
          Length = 510

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
 Frame = +3

Query: 420 CPISLDLMRDPVIVSTGQTYERAFIQR-WIDGGNRT------------CPKTQQKLQNLT 560
           C I L+  R+PV V  G ++ RA I R W   G  T            CP+ ++  +   
Sbjct: 29  CSICLEFFREPVSVECGHSFCRACIMRCWERPGAGTGTATRTLPCPLPCPQCREPARPSQ 88

Query: 561 LTPNYVLRSLI 593
           L PN  L +++
Sbjct: 89  LRPNRQLAAVV 99

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>TRAF4_HUMAN (Q9BUZ4) TNF receptor-associated factor 4 (Cysteine-rich domain|
           associated with RING and Traf domains protein 1)
           (Malignant 62) (RING finger protein 83)
          Length = 470

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 420 CPISLDLMRDPVIVST-GQTYERAFIQRWIDGGNRTCPKTQQKLQNLTLTPNYVLRSLIL 596
           CP+    MR+PV VST G  +    +Q ++  G   CP+ Q  L    + P+  L   +L
Sbjct: 18  CPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVL 77

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>OB57E_DROME (Q9V938) General odorant-binding protein 57e precursor|
          Length = 136

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/91 (20%), Positives = 36/91 (39%)
 Frame = -2

Query: 560 CKVLELLLSFWTGSVSTINPPLNESTLICLSC*HNDRISHQVKRYWATEIFRHSYSVRLL 381
           C +L  L +    + S  NP ++++ L       ++  +HQV   W       +Y     
Sbjct: 8   CLLLNFLCANVLANTSVFNPCVSQNEL-------SEYEAHQVMENWPVPPIDRAYK---- 56

Query: 380 NFVR*VFCFITCLAITIGRFCRNSNCSVFKF 288
                  CF+TC+ + +G      N  + K+
Sbjct: 57  -------CFLTCVLLDLGLIDERGNVQIDKY 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,261,113
Number of Sequences: 219361
Number of extensions: 1627610
Number of successful extensions: 4499
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 4357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4495
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

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