ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5k11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_413937.1| PREDICTED: Gallus gallus similar to KIAA1561 pr... 46 0.15
2ref|NM_001037173.1| Gallus gallus mortality factor 4 like 1 (MOR... 46 0.15
3ref|NM_001037176.1| Gallus gallus mortality factor 4 like 1 (MOR... 46 0.15
4gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, co... 46 0.15
5gb|AC040918.7| Homo sapiens chromosome 15, clone RP11-684B21, co... 46 0.15
6emb|CR386790.1| Gallus gallus finished cDNA, clone ChEST38l19 46 0.15
7emb|BX930523.1| Gallus gallus finished cDNA, clone ChEST632j16 46 0.15
8emb|Z16588.1|HS112XA1 H. sapiens (D15S118) DNA segment containin... 46 0.15
9ref|XM_739048.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.58
10gb|AC136518.3| Mus musculus BAC clone RP23-304K22 from chromosom... 42 2.3
11gb|AC164431.2| Mus musculus BAC clone RP23-430N15 from chromosom... 42 2.3
12emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 ... 42 2.3
13ref|XM_738235.1| Plasmodium chabaudi chabaudi zinc finger protei... 42 2.3
14ref|XM_674813.1| Plasmodium berghei strain ANKA zinc finger prot... 42 2.3
15gb|AC126006.22| Medicago truncatula clone mth2-4c19, complete se... 42 2.3
16gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 42 2.3
17gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete s... 42 2.3
18gb|AC140549.12| Medicago truncatula clone mth2-28o14, complete s... 42 2.3
19gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 42 2.3
20gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete se... 42 2.3
21gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete s... 42 2.3
22gb|AC135959.22| Medicago truncatula clone mth2-26j19, complete s... 42 2.3
23gb|AC122163.20| Medicago truncatula clone mth2-16l2, complete se... 42 2.3
24gb|AC126008.36| Medicago truncatula clone mth2-13e5, complete se... 42 2.3
25gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete se... 42 2.3
26gb|AC129092.13| Medicago truncatula clone mth2-17n16, complete s... 42 2.3
27gb|AC139743.15| Medicago truncatula clone mth2-16m2, complete se... 42 2.3
28gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete s... 42 2.3
29gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete s... 42 2.3
30emb|AJ972473.1| Medicago truncatula partial NSP1 gene for Nodula... 42 2.3
31emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l2... 42 2.3
32gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete ... 42 2.3
33gb|AC157537.16| Medicago truncatula clone mth2-124a3, complete s... 42 2.3
34gb|AC175028.7| Medicago truncatula clone mth2-7e22, complete seq... 42 2.3
35gb|AC171265.5| Medicago truncatula clone mth2-2j17, complete seq... 42 2.3
36gb|AC145022.28| Medicago truncatula clone mth2-8m24, complete se... 42 2.3
37gb|AC142095.9| Medicago truncatula clone mth2-14c17, complete se... 42 2.3
38gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete se... 42 2.3
39gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-8... 42 2.3
40gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-3... 42 2.3
41dbj|AK079663.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 42 2.3
42dbj|AK042355.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 2.3
43gb|AC171534.4| Medicago truncatula chromosome 7 BAC clone mth2-9... 42 2.3
44emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 42 2.3
45ref|XM_509934.1| PREDICTED: Pan troglodytes similar to serologic... 40 9.1
46gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 9.1
47ref|XM_864219.1| PREDICTED: Bos taurus similar to serologically ... 40 9.1
48ref|XM_872442.1| PREDICTED: Bos taurus similar to serologically ... 40 9.1
49ref|XM_872337.1| PREDICTED: Bos taurus similar to serologically ... 40 9.1
50ref|XM_872224.1| PREDICTED: Bos taurus similar to serologically ... 40 9.1
51ref|XM_615523.2| PREDICTED: Bos taurus similar to serologically ... 40 9.1
52gb|BC068900.1| Xenopus laevis hypothetical protein MGC83094, mRN... 40 9.1
53gb|BT014467.1| Lycopersicon esculentum clone 133814R, mRNA sequence 40 9.1
54ref|NM_004713.2| Homo sapiens serologically defined colon cancer... 40 9.1
55gb|BC064364.1| Homo sapiens serologically defined colon cancer a... 40 9.1
56gb|AC133077.4| Mus musculus BAC clone RP24-423E10 from chromosom... 40 9.1
57gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosom... 40 9.1
58gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosom... 40 9.1
59ref|XM_858354.1| PREDICTED: Canis familiaris similar to serologi... 40 9.1
60ref|XM_858331.1| PREDICTED: Canis familiaris similar to serologi... 40 9.1
61ref|XM_858314.1| PREDICTED: Canis familiaris similar to serologi... 40 9.1
62ref|XM_547800.2| PREDICTED: Canis familiaris similar to serologi... 40 9.1
63ref|XM_846136.1| PREDICTED: Canis familiaris similar to serologi... 40 9.1
64gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, compl... 40 9.1
65gb|BC020794.2| Homo sapiens serologically defined colon cancer a... 40 9.1
66gb|BC073981.1| Homo sapiens cDNA clone IMAGE:6194028, **** WARNI... 40 9.1
67emb|AL590667.7| Human DNA sequence from clone RP11-441L11 on chr... 40 9.1
68ref|XM_791801.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.1
69gb|BC041351.1| Homo sapiens serologically defined colon cancer a... 40 9.1
70gb|AC093001.2| Homo sapiens 3 BAC RP11-206M11 (Roswell Park Canc... 40 9.1
71dbj|AK093783.1| Homo sapiens cDNA FLJ36464 fis, clone THYMU20151... 40 9.1
72dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
73gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, co... 40 9.1
74gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 9.1
75dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
76emb|BX648598.1|HSM808749 Homo sapiens mRNA; cDNA DKFZp686G13209 ... 40 9.1
77emb|BX640807.1|HSM806911 Homo sapiens mRNA; cDNA DKFZp686N01237 ... 40 9.1
78dbj|AK120767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
79gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell ... 40 9.1
80dbj|AK106815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
81emb|AL627171.1|CNS07TIV Human chromosome 14 DNA sequence BAC R-5... 40 9.1
82emb|AL591767.2|CNS07EGK Human chromosome 14 DNA sequence BAC R-8... 40 9.1
83gb|AF039687.1|AF039687 Homo sapiens antigen NY-CO-1 (NY-CO-1) mR... 40 9.1
84gb|BC107764.1| Homo sapiens serologically defined colon cancer a... 40 9.1 
>ref|XM_413937.1| PREDICTED: Gallus gallus similar to KIAA1561 protein (LOC415569),
           mRNA
          Length = 7119

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 350 gaaaactcctggacttggagaag 372
           |||||||||||||||||||||||
Sbjct: 520 gaaaactcctggacttggagaag 542
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>ref|NM_001037173.1| Gallus gallus mortality factor 4 like 1 (MORF4L1), transcript
           variant 1, mRNA
          Length = 1570

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 350 gaaaactcctggacttggagaag 372
           |||||||||||||||||||||||
Sbjct: 431 gaaaactcctggacttggagaag 453
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>ref|NM_001037176.1| Gallus gallus mortality factor 4 like 1 (MORF4L1), transcript
           variant 2, mRNA
          Length = 1503

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 350 gaaaactcctggacttggagaag 372
           |||||||||||||||||||||||
Sbjct: 368 gaaaactcctggacttggagaag 390
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>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence
          Length = 175123

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 112    tcatagtttctatgcacccagca 134
              |||||||||||||||||||||||
Sbjct: 173728 tcatagtttctatgcacccagca 173706
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>gb|AC040918.7| Homo sapiens chromosome 15, clone RP11-684B21, complete sequence
          Length = 175919

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 112   tcatagtttctatgcacccagca 134
             |||||||||||||||||||||||
Sbjct: 36243 tcatagtttctatgcacccagca 36221
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>emb|CR386790.1| Gallus gallus finished cDNA, clone ChEST38l19
          Length = 608

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 350 gaaaactcctggacttggagaag 372
           |||||||||||||||||||||||
Sbjct: 395 gaaaactcctggacttggagaag 417
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>emb|BX930523.1| Gallus gallus finished cDNA, clone ChEST632j16
          Length = 974

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 350 gaaaactcctggacttggagaag 372
           |||||||||||||||||||||||
Sbjct: 423 gaaaactcctggacttggagaag 445
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>emb|Z16588.1|HS112XA1 H. sapiens (D15S118) DNA segment containing (CA) repeat; clone
           AFM112xa1; single read
          Length = 363

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 112 tcatagtttctatgcacccagca 134
           |||||||||||||||||||||||
Sbjct: 37  tcatagtttctatgcacccagca 15
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>ref|XM_739048.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000723.00.0)
            partial mRNA
          Length = 3171

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 233  taatacaaaagaggaatcttctaatg 258
            ||||||||||||||||||||| ||||
Sbjct: 1224 taatacaaaagaggaatcttccaatg 1249
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>gb|AC136518.3| Mus musculus BAC clone RP23-304K22 from chromosome 16, complete sequence
          Length = 206486

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 475    ttttatctgctacaactttaatgga 499
              |||||||||||||||||| ||||||
Sbjct: 114829 ttttatctgctacaacttcaatgga 114805
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>gb|AC164431.2| Mus musculus BAC clone RP23-430N15 from chromosome 17, complete
             sequence
          Length = 190724

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   ccttttatctgctacaacttt 493
             |||||||||||||||||||||
Sbjct: 88735 ccttttatctgctacaacttt 88715
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>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3,
             complete sequence
          Length = 133910

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 75654 agaagccgttgcaatttctaa 75634
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>ref|XM_738235.1| Plasmodium chabaudi chabaudi zinc finger protein (PC000071.04.0)
           partial mRNA
          Length = 564

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 475 ttttatctgctacaactttaa 495
           |||||||||||||||||||||
Sbjct: 550 ttttatctgctacaactttaa 530
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>ref|XM_674813.1| Plasmodium berghei strain ANKA zinc finger protein (PB001158.02.0)
           partial mRNA
          Length = 594

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 475 ttttatctgctacaactttaa 495
           |||||||||||||||||||||
Sbjct: 580 ttttatctgctacaactttaa 560
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>gb|AC126006.22| Medicago truncatula clone mth2-4c19, complete sequence
          Length = 154378

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 62220 agaagccgttgcaatttctaa 62240
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>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 54862 agaagccgttgcaatttctaa 54842
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>gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete sequence
          Length = 117225

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 97118 agaagccgttgcaatttctaa 97098
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>gb|AC140549.12| Medicago truncatula clone mth2-28o14, complete sequence
          Length = 139778

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 45530 agaagccgttgcaatttctaa 45550
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>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 40285 agaagccgttgcaatttctaa 40265
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>gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete sequence
          Length = 126477

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 70575 agaagccgttgcaatttctaa 70555
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>gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete sequence
          Length = 130178

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 43589 agaagccgttgcaatttctaa 43569
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>gb|AC135959.22| Medicago truncatula clone mth2-26j19, complete sequence
          Length = 95871

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 41482 agaagccgttgcaatttctaa 41502
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>gb|AC122163.20| Medicago truncatula clone mth2-16l2, complete sequence
          Length = 117439

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 38405 agaagccgttgcaatttctaa 38385
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>gb|AC126008.36| Medicago truncatula clone mth2-13e5, complete sequence
          Length = 124889

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 73960 agaagccgttgcaatttctaa 73940
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>gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete sequence
          Length = 103966

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    agaagccgttgcaatttctaa 388
              |||||||||||||||||||||
Sbjct: 100191 agaagccgttgcaatttctaa 100211
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>gb|AC129092.13| Medicago truncatula clone mth2-17n16, complete sequence
          Length = 104281

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 48664 agaagccgttgcaatttctaa 48644
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>gb|AC139743.15| Medicago truncatula clone mth2-16m2, complete sequence
          Length = 85237

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 62254 agaagccgttgcaatttctaa 62274
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>gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete sequence
          Length = 125734

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    agaagccgttgcaatttctaa 388
              |||||||||||||||||||||
Sbjct: 113355 agaagccgttgcaatttctaa 113375
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>gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete sequence
          Length = 129792

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 47331 agaagccgttgcaatttctaa 47311
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>emb|AJ972473.1| Medicago truncatula partial NSP1 gene for Nodulation Signaling Pathway
             1 protein
          Length = 63146

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 48211 agaagccgttgcaatttctaa 48191
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>emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE
          Length = 115705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 21068 agaagccgttgcaatttctaa 21088
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>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
          Length = 120017

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 39676 agaagccgttgcaatttctaa 39656
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>gb|AC157537.16| Medicago truncatula clone mth2-124a3, complete sequence
          Length = 112188

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 83804 agaagccgttgcaatttctaa 83784
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>gb|AC175028.7| Medicago truncatula clone mth2-7e22, complete sequence
          Length = 131012

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    agaagccgttgcaatttctaa 388
              |||||||||||||||||||||
Sbjct: 129807 agaagccgttgcaatttctaa 129827
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>gb|AC171265.5| Medicago truncatula clone mth2-2j17, complete sequence
          Length = 117361

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 95133 agaagccgttgcaatttctaa 95153



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 58062 agaagccgttgcaatttctaa 58042
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>gb|AC145022.28| Medicago truncatula clone mth2-8m24, complete sequence
          Length = 108548

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 83183 agaagccgttgcaatttctaa 83163
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>gb|AC142095.9| Medicago truncatula clone mth2-14c17, complete sequence
          Length = 110037

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 43179 agaagccgttgcaatttctaa 43159
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>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
          Length = 129658

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 44317 agaagccgttgcaatttctaa 44337
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>gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-85d15, complete sequence
          Length = 127331

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    agaagccgttgcaatttctaa 388
              |||||||||||||||||||||
Sbjct: 115434 agaagccgttgcaatttctaa 115454
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>gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-32i15, complete
            sequence
          Length = 96221

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 368  agaagccgttgcaatttctaa 388
            |||||||||||||||||||||
Sbjct: 4975 agaagccgttgcaatttctaa 4955
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>dbj|AK079663.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330102D21 product:unclassifiable, full
            insert sequence
          Length = 2289

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  ccttttatctgctacaacttt 493
            |||||||||||||||||||||
Sbjct: 1276 ccttttatctgctacaacttt 1256
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>dbj|AK042355.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630084N20 product:unclassifiable, full
            insert sequence
          Length = 2559

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  ccttttatctgctacaacttt 493
            |||||||||||||||||||||
Sbjct: 1322 ccttttatctgctacaacttt 1302
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>gb|AC171534.4| Medicago truncatula chromosome 7 BAC clone mth2-90a20, complete
             sequence
          Length = 88903

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   agaagccgttgcaatttctaa 388
             |||||||||||||||||||||
Sbjct: 65130 agaagccgttgcaatttctaa 65110
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>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 637     ttatgcaagatccacaatcaa 657
               |||||||||||||||||||||
Sbjct: 1441203 ttatgcaagatccacaatcaa 1441183
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>ref|XM_509934.1| PREDICTED: Pan troglodytes similar to serologically defined colon
            cancer antigen 1 (LOC452891), mRNA
          Length = 3231

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2393 caaaagaggaatcttctaat 2412
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     ctggacttggagaagccgtt 377
               ||||||||||||||||||||
Sbjct: 3499446 ctggacttggagaagccgtt 3499427
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>ref|XM_864219.1| PREDICTED: Bos taurus similar to serologically defined colon cancer
            antigen 1, transcript variant 3 (LOC541292), mRNA
          Length = 3663

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2456 caaaagaggaatcttctaat 2475
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>ref|XM_872442.1| PREDICTED: Bos taurus similar to serologically defined colon cancer
            antigen 1, transcript variant 8 (LOC541292), mRNA
          Length = 3444

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2237 caaaagaggaatcttctaat 2256
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>ref|XM_872337.1| PREDICTED: Bos taurus similar to serologically defined colon cancer
            antigen 1, transcript variant 7 (LOC541292), mRNA
          Length = 3573

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2366 caaaagaggaatcttctaat 2385
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>ref|XM_872224.1| PREDICTED: Bos taurus similar to serologically defined colon cancer
            antigen 1, transcript variant 6 (LOC541292), mRNA
          Length = 3502

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2295 caaaagaggaatcttctaat 2314
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>ref|XM_615523.2| PREDICTED: Bos taurus similar to serologically defined colon cancer
            antigen 1, transcript variant 1 (LOC541292), mRNA
          Length = 2743

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 1536 caaaagaggaatcttctaat 1555
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>gb|BC068900.1| Xenopus laevis hypothetical protein MGC83094, mRNA (cDNA clone
            MGC:83094 IMAGE:6317326), complete cds
          Length = 3603

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 468  cttaaccttttatctgctac 487
            ||||||||||||||||||||
Sbjct: 3221 cttaaccttttatctgctac 3240
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>gb|BT014467.1| Lycopersicon esculentum clone 133814R, mRNA sequence
          Length = 1249

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  tggaggcaaaggtggtgttg 51
           ||||||||||||||||||||
Sbjct: 715 tggaggcaaaggtggtgttg 734
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>ref|NM_004713.2| Homo sapiens serologically defined colon cancer antigen 1 (SDCCAG1),
            mRNA
          Length = 4136

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2461 caaaagaggaatcttctaat 2480
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>gb|BC064364.1| Homo sapiens serologically defined colon cancer antigen 1, mRNA
           (cDNA clone IMAGE:5555764), partial cds
          Length = 2154

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 471 caaaagaggaatcttctaat 490
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>gb|AC133077.4| Mus musculus BAC clone RP24-423E10 from chromosome 12, complete
             sequence
          Length = 183317

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   aactcctggacttggagaag 372
             ||||||||||||||||||||
Sbjct: 12361 aactcctggacttggagaag 12380
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>gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosome 6, complete sequence
          Length = 169094

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    atggagttgactctcttttt 212
              ||||||||||||||||||||
Sbjct: 168329 atggagttgactctcttttt 168310
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>gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosome 12, complete sequence
          Length = 177697

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    aactcctggacttggagaag 372
              ||||||||||||||||||||
Sbjct: 146815 aactcctggacttggagaag 146834
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>ref|XM_858354.1| PREDICTED: Canis familiaris similar to serologically defined colon
            cancer antigen 1, transcript variant 6 (LOC490678), mRNA
          Length = 3995

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2239 caaaagaggaatcttctaat 2258
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>ref|XM_858331.1| PREDICTED: Canis familiaris similar to serologically defined colon
            cancer antigen 1, transcript variant 5 (LOC490678), mRNA
          Length = 4133

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2377 caaaagaggaatcttctaat 2396
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>ref|XM_858314.1| PREDICTED: Canis familiaris similar to serologically defined colon
            cancer antigen 1, transcript variant 4 (LOC490678), mRNA
          Length = 4054

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2298 caaaagaggaatcttctaat 2317
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>ref|XM_547800.2| PREDICTED: Canis familiaris similar to serologically defined colon
            cancer antigen 1, transcript variant 1 (LOC490678), mRNA
          Length = 3295

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 1539 caaaagaggaatcttctaat 1558
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>ref|XM_846136.1| PREDICTED: Canis familiaris similar to serologically defined colon
            cancer antigen 1, transcript variant 2 (LOC490678), mRNA
          Length = 4211

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 2455 caaaagaggaatcttctaat 2474
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>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    atggagttgactctcttttt 212
              ||||||||||||||||||||
Sbjct: 101162 atggagttgactctcttttt 101181
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>gb|BC020794.2| Homo sapiens serologically defined colon cancer antigen 1, mRNA
           (cDNA clone IMAGE:4731773), complete cds
          Length = 1652

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 479 caaaagaggaatcttctaat 498
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>gb|BC073981.1| Homo sapiens cDNA clone IMAGE:6194028, **** WARNING: chimeric clone
           ****
          Length = 1199

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 411 caaaagaggaatcttctaat 430
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>emb|AL590667.7| Human DNA sequence from clone RP11-441L11 on chromosome 1 Contains a
              novel transcript and the 5' end of the BCL9 gene for B-cell
              CLL/lymphoma 9 protein, complete sequence
          Length = 175494

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 389    gctggtacaaattgttgaactgca 412
              |||||||||| |||||||||||||
Sbjct: 103859 gctggtacaagttgttgaactgca 103882
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>ref|XM_791801.1| PREDICTED: Strongylocentrotus purpuratus similar to arsA arsenite
           transporter, ATP-binding, homolog 1 (LOC592269), mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  ggaggcaaaggtggtgttgg 52
           ||||||||||||||||||||
Sbjct: 94  ggaggcaaaggtggtgttgg 113
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>gb|BC041351.1| Homo sapiens serologically defined colon cancer antigen 1, mRNA (cDNA
            clone IMAGE:5272528), complete cds
          Length = 3107

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 1165 caaaagaggaatcttctaat 1184
to top
>gb|AC093001.2| Homo sapiens 3 BAC RP11-206M11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161533

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   atgaaatgctgatgaaaact 356
             ||||||||||||||||||||
Sbjct: 98005 atgaaatgctgatgaaaact 97986
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>dbj|AK093783.1| Homo sapiens cDNA FLJ36464 fis, clone THYMU2015161, highly similar
           to Homo sapiens antigen NY-CO-1 (NY-CO-1) mRNA
          Length = 2488

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 825 caaaagaggaatcttctaat 844
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 50       tgggacaacaagcatggcggcatc 73
                |||||||||||||||| |||||||
Sbjct: 20465382 tgggacaacaagcatgccggcatc 20465405
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>gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, complete sequence
          Length = 260698

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    cccagcacactcactgggtg 147
              ||||||||||||||||||||
Sbjct: 235894 cccagcacactcactgggtg 235913
to top
>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
              sequence
          Length = 250531

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    aagagagcaataaatttagg 431
              ||||||||||||||||||||
Sbjct: 144653 aagagagcaataaatttagg 144672
to top
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1531_B07
          Length = 115245

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    tgggacaacaagcatggcggcatc 73
             |||||||||||||||| |||||||
Sbjct: 93521 tgggacaacaagcatgccggcatc 93544
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>emb|BX648598.1|HSM808749 Homo sapiens mRNA; cDNA DKFZp686G13209 (from clone DKFZp686G13209)
          Length = 3602

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  caaaagaggaatcttctaat 257
            ||||||||||||||||||||
Sbjct: 1570 caaaagaggaatcttctaat 1589
to top
>emb|BX640807.1|HSM806911 Homo sapiens mRNA; cDNA DKFZp686N01237 (from clone DKFZp686N01237)
          Length = 2362

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 681 caaaagaggaatcttctaat 700
to top
>dbj|AK120767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007M03, full
            insert sequence
          Length = 2904

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 50   tgggacaacaagcatggcggcatc 73
            |||||||||||||||| |||||||
Sbjct: 2727 tgggacaacaagcatgccggcatc 2704
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>gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147720

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 642    caagatccacaatcaactga 661
              ||||||||||||||||||||
Sbjct: 138784 caagatccacaatcaactga 138803
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>dbj|AK106815.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D02, full
           insert sequence
          Length = 1927

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  tgggacaacaagcatggcggcatc 73
           |||||||||||||||| |||||||
Sbjct: 937 tgggacaacaagcatgccggcatc 960
to top
>emb|AL627171.1|CNS07TIV Human chromosome 14 DNA sequence BAC R-596C23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173025

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   caaaagaggaatcttctaat 257
             ||||||||||||||||||||
Sbjct: 56964 caaaagaggaatcttctaat 56945
to top
>emb|AL591767.2|CNS07EGK Human chromosome 14 DNA sequence BAC R-831F12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 189410

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    caaaagaggaatcttctaat 257
              ||||||||||||||||||||
Sbjct: 180999 caaaagaggaatcttctaat 180980
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>gb|AF039687.1|AF039687 Homo sapiens antigen NY-CO-1 (NY-CO-1) mRNA, complete cds
          Length = 2078

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 415 caaaagaggaatcttctaat 434
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>gb|BC107764.1| Homo sapiens serologically defined colon cancer antigen 1, mRNA
           (cDNA clone IMAGE:4606756), partial cds
          Length = 2225

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 caaaagaggaatcttctaat 257
           ||||||||||||||||||||
Sbjct: 539 caaaagaggaatcttctaat 558


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,491,746
Number of Sequences: 3902068
Number of extensions: 5491746
Number of successful extensions: 111073
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110882
Number of HSP's gapped (non-prelim): 191
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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