ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5k08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130649.2| Drosophila melanogaster clone BACR06L03, complete sequence Length = 144234 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 83278 gcctatgctgctgcggctggtgccgc 83303
>ref|NM_167777.1| Drosophila melanogaster CG14619-RC, transcript variant C (CG14619), mRNA Length = 3160 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 1776 gcctatgctgctgcggctggtgccgc 1751
>ref|NM_167776.1| Drosophila melanogaster CG14619-RE, transcript variant E (CG14619), mRNA Length = 3210 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 1826 gcctatgctgctgcggctggtgccgc 1801
>ref|NM_167775.1| Drosophila melanogaster CG14619-RD, transcript variant D (CG14619), mRNA Length = 3263 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 1879 gcctatgctgctgcggctggtgccgc 1854
>ref|NM_134618.2| Drosophila melanogaster CG14619-RA, transcript variant A (CG14619), mRNA Length = 3450 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 2066 gcctatgctgctgcggctggtgccgc 2041
>gb|AC037453.8| Homo sapiens chromosome 8, clone RP11-247O9, complete sequence Length = 97386 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 catgatcagataatgcttttca 109 |||||||||||||||||||||| Sbjct: 48982 catgatcagataatgcttttca 49003
>gb|AY069803.1| Drosophila melanogaster SD04280 full length cDNA Length = 3450 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 2066 gcctatgctgctgcggctggtgccgc 2041
>gb|AC104515.1| Drosophila melanogaster, chromosome X, region 20B-20C, BAC clone BACR27K09, complete sequence Length = 179386 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 147888 gcctatgctgctgcggctggtgccgc 147913
>gb|AC011974.11| Homo sapiens, clone RP11-15L5, complete sequence Length = 153168 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 88 catgatcagataatgcttttca 109 |||||||||||||||||||||| Sbjct: 9833 catgatcagataatgcttttca 9812
>gb|BT003648.1| Drosophila melanogaster AT11044 full insert cDNA Length = 4853 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 3468 gcctatgctgctgcggctggtgccgc 3443
>gb|AE003574.6| Drosophila melanogaster chromosome X, section 73 of 74 of the complete sequence Length = 273468 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gcctatgctgctgcggctgctgccgc 71 ||||||||||||||||||| |||||| Sbjct: 31736 gcctatgctgctgcggctggtgccgc 31711
>gb|DQ306147.1| Tetraodon nigroviridis odorant receptor (OR10960-5) gene, complete cds Length = 918 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 gctgctgcggctgctgccgcgc 73 |||||||||||||||||||||| Sbjct: 753 gctgctgcggctgctgccgcgc 774
>gb|AC113586.14| Mus musculus chromosome 8, clone RP23-17D24, complete sequence Length = 206445 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 164834 tgctgctgcggctgctgccgc 164814
>gb|AC112997.10| Mus musculus chromosome 8, clone RP24-484I6, complete sequence Length = 191413 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 166756 tgctgctgcggctgctgccgc 166776
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 aagcctatgctgctgcggctgctgc 68 |||| |||||||||||||||||||| Sbjct: 49653 aagcttatgctgctgcggctgctgc 49629 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 393 gcttcatgttatctgcggtgtcaatgag 420 ||||||| ||||||| |||||||||||| Sbjct: 49208 gcttcattttatctgtggtgtcaatgag 49181
>gb|AC150657.1| Pan troglodytes chromosome 8 clone PTB-123K23 map human ortholog p23.1, complete sequence Length = 173624 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 90954 tcaaagatgatgccatgctct 90934
>gb|AC150656.1| Pan troglodytes chromosome 8 clone PTB-026H08 map human ortholog p23.1, complete sequence Length = 155351 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 76094 tcaaagatgatgccatgctct 76074
>gb|AC150655.1| Pan troglodytes chromosome 8 clone PTB-006D12 map human ortholog p23.1, complete sequence Length = 89111 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 64186 tcaaagatgatgccatgctct 64206
>gb|BC045454.1| Danio rerio ubiquitin specific protease 25, mRNA (cDNA clone MGC:55791 IMAGE:3817393), complete cds Length = 4086 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 2336 tgctgctgcggctgctgccgc 2356
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 aagcctatgctgctgcggctgctgc 68 |||| |||||||||||||||||||| Sbjct: 27805523 aagcttatgctgctgcggctgctgc 27805499 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 393 gcttcatgttatctgcggtgtcaatgag 420 ||||||| ||||||| |||||||||||| Sbjct: 27805078 gcttcattttatctgtggtgtcaatgag 27805051
>ref|NM_001032750.1| Takifugu rubripes coagulation factor VIII precursor (F8), mRNA Length = 4929 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 4270 tgctgctgcggctgctgccgc 4250
>ref|XM_986444.1| PREDICTED: Mus musculus similar to neuregulin 1 isoform GGF2 (LOC671340), mRNA Length = 1029 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 86 tgctgctgcggctgctgccgc 106
>ref|XM_984911.1| PREDICTED: Mus musculus similar to neuregulin 1 isoform GGF2 (LOC666606), mRNA Length = 1029 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 86 tgctgctgcggctgctgccgc 106
>gb|AC131269.3| Homo sapiens chromosome 8, clone RP11-416I21, complete sequence Length = 190031 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 180733 tcaaagatgatgccatgctct 180753
>gb|AC087568.3| Pan troglodytes clone RP43-135M11, complete sequence Length = 150199 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 ctgctgcggctgctgccgcgc 73 ||||||||||||||||||||| Sbjct: 79010 ctgctgcggctgctgccgcgc 78990
>gb|AF252831.2| Homo sapiens chromosome 8 clone SCb-177k12 map 8p22-p21, complete sequence Length = 115137 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 86832 tcaaagatgatgccatgctct 86852
>ref|XM_696292.1| PREDICTED: Danio rerio hypothetical protein LOC554968 (LOC554968), mRNA Length = 2573 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 860 tgctgctgcggctgctgccgc 880
>gb|AF410906.1|AF410906 Antheraea yamamai fibroin heavy chain (Fib-H) mRNA, partial cds Length = 555 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 45 tgctgctgcggctgctgccgc 25
>gb|AC005089.3| Homo sapiens BAC clone CTA-315H11 from 7, complete sequence Length = 177893 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ctgctgcggctgctgccgcgc 73 ||||||||||||||||||||| Sbjct: 88668 ctgctgcggctgctgccgcgc 88688
>gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like element transposase gene, partial cds; and fibroin gene, complete cds Length = 9921 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 5847 tgctgctgcggctgctgccgc 5827
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccg 70 |||| |||||||||||||||||||| Sbjct: 2282579 gcctgtgctgctgcggctgctgccg 2282603 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccg 70 |||| |||||||||||||||||||| Sbjct: 2267517 gcctgtgctgctgcggctgctgccg 2267541
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 aagcctatgctgctgcggctgctgc 68 |||| |||||||||||||||||||| Sbjct: 27896847 aagcttatgctgctgcggctgctgc 27896823 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 393 gcttcatgttatctgcggtgtcaatgag 420 ||||||| ||||||| |||||||||||| Sbjct: 27896402 gcttcattttatctgtggtgtcaatgag 27896375
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 aagcctatgctgctgcggctgctgc 68 |||| |||||||||||||||||||| Sbjct: 8370 aagcttatgctgctgcggctgctgc 8394 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 393 gcttcatgttatctgcggtgtcaatgag 420 ||||||| ||||||| |||||||||||| Sbjct: 8815 gcttcattttatctgtggtgtcaatgag 8842
>gb|AF465279.1| Takifugu rubripes coagulation factor VIII precursor (F8) mRNA, complete cds Length = 4929 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 4270 tgctgctgcggctgctgccgc 4250
>gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, complete sequence Length = 172084 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 77984 tcaaagatgatgccatgctct 77964
>gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, complete sequence Length = 178401 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 74828 tcaaagatgatgccatgctct 74808
>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0448B11 Length = 179858 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccg 70 |||| |||||||||||||||||||| Sbjct: 144417 gcctgtgctgctgcggctgctgccg 144441 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccg 70 |||| |||||||||||||||||||| Sbjct: 129355 gcctgtgctgctgcggctgctgccg 129379
>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0433B06 Length = 126258 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccg 70 |||| |||||||||||||||||||| Sbjct: 21618 gcctgtgctgctgcggctgctgccg 21642 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 gcctatgctgctgcggctgctgccg 70 |||| |||||||||||||||||||| Sbjct: 6556 gcctgtgctgctgcggctgctgccg 6580
>ref|NM_001001886.1| Danio rerio ubiquitin specific protease 25 (usp25), mRNA Length = 4086 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgc 71 ||||||||||||||||||||| Sbjct: 2336 tgctgctgcggctgctgccgc 2356
>gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, complete sequence Length = 171639 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcaaagatgatgccatgctct 169 ||||||||||||||||||||| Sbjct: 112438 tcaaagatgatgccatgctct 112458
>ref|XM_514688.1| PREDICTED: Pan troglodytes LOC458293 (LOC458293), mRNA Length = 4398 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 831 tgctgctgcggctgctgccg 812
>ref|XM_469410.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1710 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 393 gcttcatgttatctgcggtgtcaatgag 420 ||||||| ||||||| |||||||||||| Sbjct: 1149 gcttcattttatctgtggtgtcaatgag 1176
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctgctgcggctgctgccgc 71 |||||||||||||||||||| Sbjct: 1927688 gctgctgcggctgctgccgc 1927669
>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0066C04, complete sequence Length = 133944 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 102428 tgctgctgcggctgctgccg 102447
>gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046F10, complete sequence Length = 184041 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 17115 tgctgctgcggctgctgccg 17096
>gb|AC135497.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0008E02, complete sequence Length = 152974 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 93639 tgctgctgcggctgctgccg 93658
>gb|AC120306.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F10 map C53961S, complete sequence Length = 68992 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 66126 tgctgctgcggctgctgccg 66107
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ttcaggccgtgtaattcaat 125 |||||||||||||||||||| Sbjct: 81288 ttcaggccgtgtaattcaat 81269
>gb|BC079660.1| Mus musculus RIKEN cDNA 4631427C17 gene, mRNA (cDNA clone MGC:90656 IMAGE:6853550), complete cds Length = 5142 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 3081 tgctgctgctgctgctgccgcgct 3104
>ref|XM_589340.2| PREDICTED: Bos taurus 60 kDa protein 1-like protein (LOC511913), mRNA Length = 2738 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 1584 caaagatgatgccatgctct 1603
>ref|XM_880722.1| PREDICTED: Bos taurus similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (P60 lymphocyte protein) (HuCHA60), transcript variant 4 (LOC615700), mRNA Length = 2315 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 1176 caaagatgatgccatgctct 1195
>ref|XM_867695.1| PREDICTED: Bos taurus similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (P60 lymphocyte protein) (HuCHA60), transcript variant 1 (LOC615700), mRNA Length = 2277 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 1138 caaagatgatgccatgctct 1157
>ref|XM_880674.1| PREDICTED: Bos taurus similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (P60 lymphocyte protein) (HuCHA60), transcript variant 3 (LOC615700), mRNA Length = 1739 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 600 caaagatgatgccatgctct 619
>gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353E8, complete sequence Length = 221748 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 144819 tgctgctgctgctgctgccgcgct 144842
>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence Length = 99587 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ttcaggccgtgtaattcaat 125 |||||||||||||||||||| Sbjct: 68606 ttcaggccgtgtaattcaat 68587
>ref|XM_838505.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1424) partial mRNA Length = 3090 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctgctgcggctgctgccgc 71 |||||||||||||||||||| Sbjct: 1586 gctgctgcggctgctgccgc 1567
>ref|XM_382826.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02650.1) partial mRNA Length = 2400 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gctgctgcggctgctgccgc 71 |||||||||||||||||||| Sbjct: 76 gctgctgcggctgctgccgc 95
>gb|BC059255.1| Mus musculus RIKEN cDNA 4631427C17 gene, mRNA (cDNA clone IMAGE:6406299), containing frame-shift errors Length = 4390 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 2343 tgctgctgctgctgctgccgcgct 2366
>gb|BC037447.1| Mus musculus RIKEN cDNA 4631427C17 gene, mRNA (cDNA clone IMAGE:3981504), with apparent retained intron Length = 3662 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 1615 tgctgctgctgctgctgccgcgct 1638
>gb|AY166971.1|AY166970S02 Homo sapiens carbamoylphosphate synthetase (CPSI) gene, exon 2; nuclear gene for mitochondrial product Length = 324 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 ctgaagaaacacgttgcatg 615 |||||||||||||||||||| Sbjct: 114 ctgaagaaacacgttgcatg 95
>emb|AL731557.7| Human DNA sequence from clone RP11-501J20 on chromosome 10 Contains two novel genes, the gene for a novel protein (possible ortholog of rodent ventral anterior homeobox containing gene 1 (VAX1)), a ribosomal protein L12 (RPL12) pseudogene, the 5' end of the SLC18A2 gene for member 2 solute carrier family 18 (vesicular monoamine), a novel gene and ten CpG islands, complete sequence Length = 142068 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctgctgcggctgctgccgc 71 |||||||||||||||||||| Sbjct: 31329 gctgctgcggctgctgccgc 31310
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctgctgcggctgctgccgc 71 |||||||||||||||||||| Sbjct: 248178 gctgctgcggctgctgccgc 248159
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 71446 tgctgctgcggctgctgccg 71465
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 95026 tgctgctgcggctgctgccg 95007
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15, complete sequence Length = 130618 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 48043 tgctgctgcggctgctgccg 48024
>gb|AY286476.1| Bos taurus 60 kDa protein 1-like protein gene, partial cds Length = 404 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 59 caaagatgatgccatgctct 78
>gb|AC104982.7| Homo sapiens chromosome 17, clone RP11-338L22, complete sequence Length = 164107 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 ctccaggcactgaagaaaca 606 |||||||||||||||||||| Sbjct: 32861 ctccaggcactgaagaaaca 32880
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence Length = 134908 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 acaccagcagcagccagaagcaaa 251 ||||||||||||||||||| |||| Sbjct: 88474 acaccagcagcagccagaatcaaa 88497
>gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, complete sequence Length = 200450 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 131874 caaagatgatgccatgctct 131855
>gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143444 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ctatgctgctgcggctgctgccgc 71 |||||||||||| ||||||||||| Sbjct: 28481 ctatgctgctgcagctgctgccgc 28458
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tgctgcggctgctgccgcgc 73 |||||||||||||||||||| Sbjct: 2453898 tgctgcggctgctgccgcgc 2453879
>gb|DP000058.1| Felis catus target 117 genomic scaffold Length = 458092 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 435189 caaagatgatgccatgctct 435170
>ref|NM_137203.2| Drosophila melanogaster CG8192-RA (CG8192), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 453 tgctgctgcggctgctgccg 434
>gb|AC097360.2| Homo sapiens chromosome 3 clone RP11-344C13, complete sequence Length = 166349 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 74291 caaagatgatgccatgctct 74272
>gb|AC027547.8| Homo sapiens chromosome 15, clone RP11-18P13, complete sequence Length = 83003 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 aacggataaacaaattctgg 312 |||||||||||||||||||| Sbjct: 45444 aacggataaacaaattctgg 45425
>gb|AY069365.1| Drosophila melanogaster LD06965 full length cDNA Length = 1741 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 425 tgctgctgcggctgctgccg 406
>emb|CR524116.1| Gallus gallus finished cDNA, clone ChEST645f16 Length = 1310 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 ctgctgcggctgctgccgcgctac 76 |||||||| ||||||||||||||| Sbjct: 95 ctgctgcgcctgctgccgcgctac 118
>emb|BX530089.9| Zebrafish DNA sequence from clone CH211-129M12 in linkage group 3, complete sequence Length = 176077 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tgaaacaacggataaacaaa 306 |||||||||||||||||||| Sbjct: 154352 tgaaacaacggataaacaaa 154371
>emb|BX511164.11| Zebrafish DNA sequence from clone DKEY-63J1 in linkage group 19, complete sequence Length = 214001 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 actgaagaaacacgttgcat 614 |||||||||||||||||||| Sbjct: 141812 actgaagaaacacgttgcat 141793 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 actgaagaaacacgttgcat 614 |||||||||||||||||||| Sbjct: 138027 actgaagaaacacgttgcat 138008
>gb|AC010596.8| Homo sapiens chromosome 5 clone CTC-483B24, complete sequence Length = 165193 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tccttgatgtattcctgcat 218 |||||||||||||||||||| Sbjct: 66154 tccttgatgtattcctgcat 66173
>gb|BC102077.1| Bos taurus cDNA clone IMAGE:7943409, partial cds Length = 1234 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 1115 caaagatgatgccatgctct 1134
>ref|NG_003217.1| Homo sapiens heat shock 60kDa protein 1 pseudogene (LOC283320) on chromosome 12 Length = 1952 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 1529 caaagatgatgccatgctct 1548
>dbj|AK053527.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130105J10 product:S-ADENOSYLHOMOCYSTEINE HYDROLASE-LIKE PROTEIN homolog [Homo sapiens], full insert sequence Length = 4620 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 2853 tgctgctgctgctgctgccgcgct 2876
>dbj|AK014539.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631427C17 product:SIMILAR TO S-ADENOSYLHOMOCYSTEINE HYDROLASE-LIKE 1 (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 3234 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 3122 tgctgctgctgctgctgccgcgct 3145
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 13981146 tgctgctgcggctgctgccg 13981127 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 3581777 tgctgctgcggctgctgccg 3581758
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 11645298 tgctgctgcggctgctgccg 11645279 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 11160495 tgctgctgcggctgctgccg 11160514 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 9403238 tgctgctgcggctgctgccg 9403257
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 16736992 tgctgctgcggctgctgccg 16736973 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 12422586 tgctgctgcggctgctgccg 12422605
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ttcaggccgtgtaattcaat 125 |||||||||||||||||||| Sbjct: 28653496 ttcaggccgtgtaattcaat 28653477
>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence Length = 211304 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tgctcccacatcaacttcct 488 |||||||||||||||||||| Sbjct: 119672 tgctcccacatcaacttcct 119653
>gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186321 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 114031 caaagatgatgccatgctct 114012
>gb|AY911359.1| Bos taurus clone IMAGE:7961498 mRNA sequence Length = 1244 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caaagatgatgccatgctct 169 |||||||||||||||||||| Sbjct: 1141 caaagatgatgccatgctct 1160
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 139046 tgctgctgcggctgctgccg 139065
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 88479 tgctgctgcggctgctgccg 88460
>dbj|AK100910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132J11, full insert sequence Length = 2313 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ttcaggccgtgtaattcaat 125 |||||||||||||||||||| Sbjct: 1188 ttcaggccgtgtaattcaat 1207
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 59173 tgctgctgcggctgctgccg 59192
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 136531 tgctgctgcggctgctgccg 136550
>dbj|AK122382.1| Mus musculus mRNA for mKIAA0828 protein Length = 4903 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 2874 tgctgctgctgctgctgccgcgct 2897
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 11724487 tgctgctgcggctgctgccg 11724468 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 11239684 tgctgctgcggctgctgccg 11239703 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccg 70 |||||||||||||||||||| Sbjct: 9474935 tgctgctgcggctgctgccg 9474954
>ref|NM_021414.3| Mus musculus RIKEN cDNA 4631427C17 gene (4631427C17Rik), mRNA Length = 5142 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 3081 tgctgctgctgctgctgccgcgct 3104
>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence Length = 173574 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 tgctgctgcggctgctgccgcgct 74 ||||||||| |||||||||||||| Sbjct: 172799 tgctgctgctgctgctgccgcgct 172776
>gb|U67155.1|RGU67155 Rubrivivax gelatinosus strain 149 puc operon, light-harvesting B800-850 beta polypeptide (pucB) and light-harvesting B800-850 alpha polypeptide (pucA) genes, complete cds Length = 1400 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gctgctgcggctgctgccgc 71 |||||||||||||||||||| Sbjct: 982 gctgctgcggctgctgccgc 1001
>dbj|D50317.1| Oryza sativa (japonica cultivar-group) mRNA for ADP glucose pyrophosphorylase large subunit, complete cds Length = 2065 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ttcaggccgtgtaattcaat 125 |||||||||||||||||||| Sbjct: 907 ttcaggccgtgtaattcaat 926 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,996,904 Number of Sequences: 3902068 Number of extensions: 4996904 Number of successful extensions: 105412 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104767 Number of HSP's gapped (non-prelim): 645 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
