| Clone Name | bags5j20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474082.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1284 Score = 313 bits (158), Expect = 3e-82 Identities = 392/470 (83%) Strand = Plus / Plus Query: 1 ggttcattgttggtttaattacagctactcgttttatcaaaggtggaggtattaaaaatg 60 |||| ||| ||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct: 620 ggtttattattggtttaattacggctactcgttttatcaaaggtggaggcatccggaata 679 Query: 61 tccttgtagttggggcagatgctctttcacaatatgtggattggacagatagaggtacat 120 | || ||| |||| || |||||||||||||||| ||||||||||||||| |||||||||| Sbjct: 680 ttctagtaattggtgccgatgctctttcacaatttgtggattggacagacagaggtacat 739 Query: 121 gtatcctcttcggtgatgctgctggtgctgttttggtccagtcttgcaatgctgatgaag 180 | |||||||| |||||||||||||||||||||||||| ||| | |||| ||||||||||| Sbjct: 740 gcatcctctttggtgatgctgctggtgctgttttggttcaggcatgcagtgctgatgaag 799 Query: 181 atggtttgctaggtttctgtgtgcaaagcgatggccatgggcaaaagcacctgcattgtt 240 |||| ||||||||||| || || ||||| |||||| | || ||||||||| | ||||| Sbjct: 800 atggcttgctaggtttttgcgttcaaagtgatggcaacggacaaaagcacttaaattgtg 859 Query: 241 catcgtcgaacgctgactccatcttatccaagaccaatggtgtccctggcttcccaccaa 300 |||||| | | ||| || ||| | || |||||||||||||||||| |||||||||| | Sbjct: 860 tctcgtcgcatgttgagtctatcctgtcgaagaccaatggtgtccctagcttcccaccta 919 Query: 301 agaagaccaacttttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtac 360 | ||| | | ||| || ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 920 aaaaggcaaccttctccaacattgaaatgaatggaaaggaggtttttcgctttgctgtgc 979 Query: 361 gttgcgtgccacagtccatcgaaaaggcgctagaggaagccggcctacctgcctccagta 420 | || |||||||| || || || ||||| | || || || || ||||||| ||||||| Sbjct: 980 gatgtgtgccacaatctattgagaaggcattggaagaggctggtttacctgcttccagta 1039 Query: 421 tagattggctgttgctacaccaagctaaccagcggatcatcgatgctgct 470 | |||||| ||||||| || |||||||| |||||||| || ||||||||| Sbjct: 1040 ttgattggttgttgctgcatcaagctaatcagcggattattgatgctgct 1089
>dbj|AK120067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L21, full insert sequence Length = 1961 Score = 313 bits (158), Expect = 3e-82 Identities = 392/470 (83%) Strand = Plus / Plus Query: 1 ggttcattgttggtttaattacagctactcgttttatcaaaggtggaggtattaaaaatg 60 |||| ||| ||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct: 861 ggtttattattggtttaattacggctactcgttttatcaaaggtggaggcatccggaata 920 Query: 61 tccttgtagttggggcagatgctctttcacaatatgtggattggacagatagaggtacat 120 | || ||| |||| || |||||||||||||||| ||||||||||||||| |||||||||| Sbjct: 921 ttctagtaattggtgccgatgctctttcacaatttgtggattggacagacagaggtacat 980 Query: 121 gtatcctcttcggtgatgctgctggtgctgttttggtccagtcttgcaatgctgatgaag 180 | |||||||| |||||||||||||||||||||||||| ||| | |||| ||||||||||| Sbjct: 981 gcatcctctttggtgatgctgctggtgctgttttggttcaggcatgcagtgctgatgaag 1040 Query: 181 atggtttgctaggtttctgtgtgcaaagcgatggccatgggcaaaagcacctgcattgtt 240 |||| ||||||||||| || || ||||| |||||| | || ||||||||| | ||||| Sbjct: 1041 atggcttgctaggtttatgcgttcaaagtgatggcaacggacaaaagcacttaaattgtg 1100 Query: 241 catcgtcgaacgctgactccatcttatccaagaccaatggtgtccctggcttcccaccaa 300 |||||| | | ||| || ||| | || |||||||||||||||||| |||||||||| | Sbjct: 1101 tctcgtcgcatgttgagtctatcctgtcgaagaccaatggtgtccctagcttcccaccta 1160 Query: 301 agaagaccaacttttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtac 360 | ||| | | ||| || ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 1161 aaaaggcaaccttctccaacattgaaatgaatggaaaggaggtttttcgctttgctgtgc 1220 Query: 361 gttgcgtgccacagtccatcgaaaaggcgctagaggaagccggcctacctgcctccagta 420 | || |||||||| || || || ||||| | || || || || ||||||| ||||||| Sbjct: 1221 gatgtgtgccacaatctattgagaaggcattggaagaggctggtttacctgcttccagta 1280 Query: 421 tagattggctgttgctacaccaagctaaccagcggatcatcgatgctgct 470 | |||||| ||||||| || |||||||| |||||||| || ||||||||| Sbjct: 1281 ttgattggttgttgctgcatcaagctaatcagcggattattgatgctgct 1330
>gb|AY107966.1| Zea mays PCO142703 mRNA sequence Length = 1202 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 15 ttaattacagctactcgttttatcaaaggtggaggtattaaaaatgtccttgtagttggg 74 ||||| ||||||||||| ||||||||||| |||||| || | |||||| | ||| |||| Sbjct: 152 ttaatcacagctactcgctttatcaaaggcggaggttttcagaatgtcttagtaattggt 211 Query: 75 gcagatgctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggt 134 ||||||||||||||| |||| |||||||||||||| ||||||||||| || || || ||| Sbjct: 212 gcagatgctctttcaaaatacgtggattggacagacagaggtacatgcattctttttggt 271 Query: 135 gatgctgctggtgctgttttggtccagtcttgcaatgctgatgaagatggtttgctaggt 194 ||||||||||||||||| ||||| ||| | |||| ||||||||||||||| |||| ||| Sbjct: 272 gatgctgctggtgctgtgttggtacaggcatgcagtgctgatgaagatggcatgcttggt 331 Query: 195 ttctgtgtgcaaagcgatggccatgggcaaaagcacct 232 || ||||| ||||| |||||| |||| ||||||||||| Sbjct: 332 ttttgtgttcaaagtgatggcaatggacaaaagcacct 369 Score = 115 bits (58), Expect = 1e-22 Identities = 172/210 (81%) Strand = Plus / Plus Query: 261 atcttatccaagaccaatggtgtccctggcttcccaccaaagaagaccaacttttcttgc 320 ||||| ||||| ||||||||||| || || || || ||||||||| | | || || ||| Sbjct: 398 atcttgtccaataccaatggtgttccaggatttccgccaaagaaggcaacctactcatgc 457 Query: 321 attgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgccacagtccatc 380 ||| ||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| Sbjct: 458 attcaaatgaacggaaaggaagtttttcgctttgctgtccgatgcgtgccacagtccatt 517 Query: 381 gaaaaggcgctagaggaagccggcctacctgcctccagtatagattggctgttgctacac 440 || ||||| || | ||||| || | |||||||||||||| || ||| ||||| |||| Sbjct: 518 gagaaggcactccaagaagctggtttgcctgcctccagtatcgactggttgttgttacat 577 Query: 441 caagctaaccagcggatcatcgatgctgct 470 |||||||| ||||| || || ||||||||| Sbjct: 578 caagctaatcagcgtattattgatgctgct 607
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 127 bits (64), Expect = 4e-26 Identities = 76/80 (95%) Strand = Plus / Plus Query: 78 gatgctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgat 137 |||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 138425 gatgctctttcacaatttgtggattggacagacagaggtacatgcatcctctttggtgat 138484 Query: 138 gctgctggtgctgttttggt 157 |||||||||||||||||||| Sbjct: 138485 gctgctggtgctgttttggt 138504 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 270 aagaccaatggtgtccctggcttcccaccaaagaagaccaacttttcttgcattgaaatg 329 |||||||||||||||||| |||||||||| || ||| | | ||| || |||||||||| Sbjct: 138898 aagaccaatggtgtccctagcttcccacctaaaaaggcaaccttctccaacattgaaatg 138957 Query: 330 aatggaaaggaggttttccgctttgctgtacgttgcgtgccacagtccatcgaaaaggcg 389 ||||||||||||||||| ||||||||||| || || |||||||| || || || ||||| Sbjct: 138958 aatggaaaggaggtttttcgctttgctgtgcgatgtgtgccacaatctattgagaaggca 139017 Query: 390 ctagaggaagccggcctacctgcctccagtatagattggctgttgct 436 | || || || || ||||||| |||||||| |||||| ||||||| Sbjct: 139018 ttggaagaggctggtttacctgcttccagtattgattggttgttgct 139064 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 1 ggttcattgttggtttaattacagctactcgttttatcaaaggt 44 |||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct: 138248 ggtttattattggtttaattacggctactcgttttatcaaaggt 138291 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 165 tgcaatgctgatgaagatggtttgctaggtttctgtgtgcaaagcgatggc 215 |||| ||||||||||||||| ||||||||||| || || ||||| |||||| Sbjct: 138714 tgcagtgctgatgaagatggcttgctaggtttttgcgttcaaagtgatggc 138764
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 127 bits (64), Expect = 4e-26 Identities = 76/80 (95%) Strand = Plus / Plus Query: 78 gatgctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgat 137 |||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 32778996 gatgctctttcacaatttgtggattggacagacagaggtacatgcatcctctttggtgat 32779055 Query: 138 gctgctggtgctgttttggt 157 |||||||||||||||||||| Sbjct: 32779056 gctgctggtgctgttttggt 32779075 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 270 aagaccaatggtgtccctggcttcccaccaaagaagaccaacttttcttgcattgaaatg 329 |||||||||||||||||| |||||||||| || ||| | | ||| || |||||||||| Sbjct: 32779469 aagaccaatggtgtccctagcttcccacctaaaaaggcaaccttctccaacattgaaatg 32779528 Query: 330 aatggaaaggaggttttccgctttgctgtacgttgcgtgccacagtccatcgaaaaggcg 389 ||||||||||||||||| ||||||||||| || || |||||||| || || || ||||| Sbjct: 32779529 aatggaaaggaggtttttcgctttgctgtgcgatgtgtgccacaatctattgagaaggca 32779588 Query: 390 ctagaggaagccggcctacctgcctccagtatagattggctgttgct 436 | || || || || ||||||| |||||||| |||||| ||||||| Sbjct: 32779589 ttggaagaggctggtttacctgcttccagtattgattggttgttgct 32779635 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 1 ggttcattgttggtttaattacagctactcgttttatcaaaggt 44 |||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct: 32778819 ggtttattattggtttaattacggctactcgttttatcaaaggt 32778862 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 165 tgcaatgctgatgaagatggtttgctaggtttctgtgtgcaaagcgatggc 215 |||| ||||||||||||||| ||||||||||| || || ||||| |||||| Sbjct: 32779285 tgcagtgctgatgaagatggcttgctaggtttttgcgttcaaagtgatggc 32779335
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete sequence Length = 91539 Score = 127 bits (64), Expect = 4e-26 Identities = 76/80 (95%) Strand = Plus / Plus Query: 78 gatgctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgat 137 |||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 50387 gatgctctttcacaatttgtggattggacagacagaggtacatgcatcctctttggtgat 50446 Query: 138 gctgctggtgctgttttggt 157 |||||||||||||||||||| Sbjct: 50447 gctgctggtgctgttttggt 50466 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 270 aagaccaatggtgtccctggcttcccaccaaagaagaccaacttttcttgcattgaaatg 329 |||||||||||||||||| |||||||||| || ||| | | ||| || |||||||||| Sbjct: 50860 aagaccaatggtgtccctagcttcccacctaaaaaggcaaccttctccaacattgaaatg 50919 Query: 330 aatggaaaggaggttttccgctttgctgtacgttgcgtgccacagtccatcgaaaaggcg 389 ||||||||||||||||| ||||||||||| || || |||||||| || || || ||||| Sbjct: 50920 aatggaaaggaggtttttcgctttgctgtgcgatgtgtgccacaatctattgagaaggca 50979 Query: 390 ctagaggaagccggcctacctgcctccagtatagattggctgttgct 436 | || || || || ||||||| |||||||| |||||| ||||||| Sbjct: 50980 ttggaagaggctggtttacctgcttccagtattgattggttgttgct 51026 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 1 ggttcattgttggtttaattacagctactcgttttatcaaaggt 44 |||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct: 50210 ggtttattattggtttaattacggctactcgttttatcaaaggt 50253 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 165 tgcaatgctgatgaagatggtttgctaggtttctgtgtgcaaagcgatggc 215 |||| ||||||||||||||| ||||||||||| || || ||||| |||||| Sbjct: 50676 tgcagtgctgatgaagatggcttgctaggtttttgcgttcaaagtgatggc 50726
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 127 bits (64), Expect = 4e-26 Identities = 76/80 (95%) Strand = Plus / Plus Query: 78 gatgctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgat 137 |||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 41282 gatgctctttcacaatttgtggattggacagacagaggtacatgcatcctctttggtgat 41341 Query: 138 gctgctggtgctgttttggt 157 |||||||||||||||||||| Sbjct: 41342 gctgctggtgctgttttggt 41361 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 270 aagaccaatggtgtccctggcttcccaccaaagaagaccaacttttcttgcattgaaatg 329 |||||||||||||||||| |||||||||| || ||| | | ||| || |||||||||| Sbjct: 41755 aagaccaatggtgtccctagcttcccacctaaaaaggcaaccttctccaacattgaaatg 41814 Query: 330 aatggaaaggaggttttccgctttgctgtacgttgcgtgccacagtccatcgaaaaggcg 389 ||||||||||||||||| ||||||||||| || || |||||||| || || || ||||| Sbjct: 41815 aatggaaaggaggtttttcgctttgctgtgcgatgtgtgccacaatctattgagaaggca 41874 Query: 390 ctagaggaagccggcctacctgcctccagtatagattggctgttgct 436 | || || || || ||||||| |||||||| |||||| ||||||| Sbjct: 41875 ttggaagaggctggtttacctgcttccagtattgattggttgttgct 41921 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 1 ggttcattgttggtttaattacagctactcgttttatcaaaggt 44 |||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct: 41105 ggtttattattggtttaattacggctactcgttttatcaaaggt 41148 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 165 tgcaatgctgatgaagatggtttgctaggtttctgtgtgcaaagcgatggc 215 |||| ||||||||||||||| ||||||||||| || || ||||| |||||| Sbjct: 41571 tgcagtgctgatgaagatggcttgctaggtttttgcgttcaaagtgatggc 41621
>gb|DQ459442.1| Elaeis oleifera 3-ketoacyl-acyl carrier protein synthase III mRNA, complete cds Length = 1872 Score = 109 bits (55), Expect = 8e-21 Identities = 112/131 (85%) Strand = Plus / Plus Query: 21 acagctactcgttttatcaaaggtggaggtattaaaaatgtccttgtagttggggcagat 80 ||||| ||||||||||| |||||||| || | |||||||||| ||| |||| |||||| Sbjct: 845 acagcaactcgttttattaaaggtggtgggttccaaaatgtcctagtaattggtgcagat 904 Query: 81 gctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgatgct 140 ||||| |||| |||||| || |||||||||||||| ||||| || || || ||||||||| Sbjct: 905 gctctctcacgatatgtagactggacagatagaggcacatgcatactttttggtgatgct 964 Query: 141 gctggtgctgt 151 ||||||||||| Sbjct: 965 gctggtgctgt 975 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 312 ttttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgcca 371 ||||||||||| |||||||||| |||||||| ||||||||||| || || || | |||| Sbjct: 1139 ttttcttgcatccaaatgaatggcaaggaggtcttccgctttgcagtgcggtgtgggcca 1198 Query: 372 cagtc 376 ||||| Sbjct: 1199 cagtc 1203
>gb|DQ459441.1| Elaeis guineensis 3-ketoacyl-acyl carrier protein synthase III mRNA, complete cds Length = 1867 Score = 109 bits (55), Expect = 8e-21 Identities = 112/131 (85%) Strand = Plus / Plus Query: 21 acagctactcgttttatcaaaggtggaggtattaaaaatgtccttgtagttggggcagat 80 ||||| ||||||||||| |||||||| || | |||||||||| ||| |||| |||||| Sbjct: 845 acagcaactcgttttattaaaggtggtgggttccaaaatgtcctagtaattggtgcagat 904 Query: 81 gctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgatgct 140 ||||| |||| |||||| || |||||||||||||| ||||| || || || ||||||||| Sbjct: 905 gctctctcacgatatgtagactggacagatagaggcacatgcatactttttggtgatgct 964 Query: 141 gctggtgctgt 151 ||||||||||| Sbjct: 965 gctggtgctgt 975 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 312 ttttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgcca 371 ||||||||||| |||||||||| |||||||| ||||||||||| || || || |||||| Sbjct: 1136 ttttcttgcatccaaatgaatggcaaggaggtcttccgctttgcagtgcggtgtgtgcca 1195 Query: 372 cagtc 376 ||||| Sbjct: 1196 cagtc 1200
>gb|AF457934.1| Zea mays clone ceb1.pk0080.g4, mRNA sequence Length = 463 Score = 109 bits (55), Expect = 8e-21 Identities = 126/145 (86%), Gaps = 4/145 (2%) Strand = Plus / Plus Query: 9 gttggtttaattacagctactcgttttatcaaaggtggaggtattaaaaatgtccttgta 68 ||||| ||||| ||||||||||||||||||||||||||| || || | ||| |||| ||| Sbjct: 281 gttggcttaatcacagctactcgttttatcaaaggtggangttttcagaatatcctagta 340 Query: 69 gttgg-ggcagatgctctttcacaatatgtggattggacag-atagaggtacatgtatcc 126 ||||| ||| ||||| | |||| |||||||||| ||||||| | ||||||||||| |||| Sbjct: 341 gttggtggctgatgc-ccttcaaaatatgtgga-tggacagaacagaggtacatgcatcc 398 Query: 127 tcttcggtgatgctgctggtgctgt 151 | || |||||||||||||||||||| Sbjct: 399 ttttnggtgatgctgctggtgctgt 423
>gb|AF143502.1|AF143502 Elaeis guineensis ketoacyl synthase III mRNA, partial cds Length = 570 Score = 103 bits (52), Expect = 5e-19 Identities = 111/131 (84%) Strand = Plus / Plus Query: 21 acagctactcgttttatcaaaggtggaggtattaaaaatgtccttgtagttggggcagat 80 ||||| ||||||||||| | |||||| || | |||||||||| ||| |||| |||||| Sbjct: 43 acagcaactcgttttattanaggtggtgggttccaaaatgtcctagtaattggtgcagat 102 Query: 81 gctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgatgct 140 ||||| |||| |||||| || |||||||||||||| ||||| || || || ||||||||| Sbjct: 103 gctctctcacgatatgtagactggacagatagaggcacatgcatactttttggtgatgct 162 Query: 141 gctggtgctgt 151 ||||||||||| Sbjct: 163 gctggtgctgt 173 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 312 ttttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgcca 371 ||||||||||| |||||||||| |||||||| ||||||||||| || || || |||||| Sbjct: 337 ttttcttgcatccaaatgaatggcaaggaggtcttccgctttgcagtgcggtgtgtgcca 396 Query: 372 cagtc 376 ||||| Sbjct: 397 cagtc 401
>gb|AY107780.1| Zea mays PCO142704 mRNA sequence Length = 688 Score = 97.6 bits (49), Expect = 3e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 318 tgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgccacagtcc 377 |||||| | ||||| |||||||| ||||||||||||||||| || || |||||||||||| Sbjct: 25 tgcattcagatgaacggaaaggaagttttccgctttgctgtccgatgtgtgccacagtcc 84 Query: 378 atcgaaaaggcgctagaggaagccggcctacctgcctccagtatagattggctgttgcta 437 || || ||||| || | ||||| || | || |||||||||||||| ||| ||||| || Sbjct: 85 attgagaaggcactccaagaagctggtttgcccgcctccagtatagactggttgttgtta 144 Query: 438 caccaagctaaccagcggatcatcgatgc 466 || |||||||| |||||||| || ||||| Sbjct: 145 catcaagctaatcagcggattattgatgc 173
>gb|AF169015.1|AF169015 Elaeis oleifera beta ketoacyl synthase III mRNA, partial cds Length = 567 Score = 93.7 bits (47), Expect = 5e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 21 acagctactcgttttatcaaaggtggaggtattaaaaatgtccttgtagttggggcagat 80 ||||| ||| ||||||| |||||||| || | |||||||||| ||| |||| |||||| Sbjct: 43 acagcaactggttttattaaaggtggtgggttccaaaatgtcctagtaattggtgcagat 102 Query: 81 gctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgatgct 140 | ||| |||| |||||| || |||||||||||||| ||||| || || || ||||||||| Sbjct: 103 gttctctcacgatatgtagactggacagatagaggcacatgcatactttttggtgatgct 162 Query: 141 gctggtgctgt 151 ||||||||||| Sbjct: 163 gctggtgctgt 173 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 312 ttttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgcca 371 ||||||||||| |||||||||| |||||||| ||||||||||| || || || |||||| Sbjct: 334 ttttcttgcatccaaatgaatggcaaggaggtcttccgctttgcagtgcggtgtgtgcca 393 Query: 372 cagtc 376 ||||| Sbjct: 394 cagtc 398
>emb|Y14876.1|PSY14876 Pisum sativum mRNA for beta-ketoacyl-acyl carrier protein synthase III Length = 1678 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 78 gatgctctttcacaatatgtggattggacagatagaggtacatgtatcctcttcggtgat 137 ||||||||||||| |||||| ||||||||||| ||||| || ||||| | ||||||||| Sbjct: 780 gatgctctttcacgatatgttgattggacagacagaggaacctgtattttgttcggtgat 839 Query: 138 gctgctggtgctgt 151 |||||||||||||| Sbjct: 840 gctgctggtgctgt 853
>emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE Length = 136068 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 55 aaaatgtccttgtagttggggcagatgctctttcacaatatgtggattggacagatagag 114 ||||||| || || ||||| || ||||| ||||||| |||||| ||||||||||| |||| Sbjct: 60389 aaaatgttctggttgttggagctgatgcgctttcacgatatgttgattggacagacagag 60330 Query: 115 gtacatgtatcctcttcggtgatgctgctggtgctgt 151 | || ||||| || || |||||||||||||||||||| Sbjct: 60329 ggacctgtattctttttggtgatgctgctggtgctgt 60293 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Minus Query: 318 tgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgccacag 374 |||||| ||||||||||||| || || || |||||||||||||| || ||| ||||| Sbjct: 59665 tgcattcaaatgaatggaaaagaagtctttcgctttgctgtacgatgtgtggcacag 59609
>gb|AF260565.1|AF260565 Glycine max beta-ketoacyl-acyl carrier protein synthase III mRNA, complete cds Length = 1778 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 70 ttggggcagatgctctttcacaatatgtggattggacagatagaggtacatgtatcctct 129 ||||||| |||||||| |||| |||||| ||||||||||| ||||| || ||||| || | Sbjct: 727 ttggggcggatgctctctcacgatatgttgattggacagacagagggacctgtattcttt 786 Query: 130 tcggtgatgctgctggtgctgt 151 | || ||||||||||||||||| Sbjct: 787 ttggggatgctgctggtgctgt 808
>gb|AY497392.1| Populus balsamifera subsp. trichocarpa microsatellite ORPM_203 sequence Length = 649 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 325 aaatgaatggaaaggaggttttccgctttgctgt 358 ||||||||||||| |||||||||||||||||||| Sbjct: 223 aaatgaatggaaaagaggttttccgctttgctgt 256
>gb|AF026150.1|AF026150 Perilla frutescens beta-ketoacyl-ACP synthase IIIA (KAS IIIA) mRNA, complete cds Length = 1906 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 93 tatgtggattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgtt 152 ||||| |||||||| || ||||| | || |||||||| ||||||||||| ||||||||| Sbjct: 955 tatgttgattggactgacagaggatcctgcatcctctttggtgatgctgcaggtgctgtt 1014 Query: 153 tt 154 || Sbjct: 1015 tt 1016
>gb|AF026151.1| Perilla frutescens beta-ketoacyl-ACP synthase IIIB (KAS IIIB) mRNA, complete cds Length = 1904 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Plus Query: 120 tgtatcctcttcggtgatgctgctggtgctgttttggtccagtc 163 ||||| ||||| || |||||||||||||||||||| || ||||| Sbjct: 922 tgtattctctttggcgatgctgctggtgctgttttagtacagtc 965
>gb|AF134853.1|AF134853 Cuphea hookeriana acyl-ACP carrier protein synthase III-1 (KAS3-1) mRNA, complete cds Length = 1354 Score = 48.1 bits (24), Expect = 0.026 Identities = 57/68 (83%) Strand = Plus / Plus Query: 117 acatgtatcctcttcggtgatgctgctggtgctgttttggtccagtcttgcaatgctgat 176 |||||||| ||||| || ||||||||||| ||||| |||| ||||| || ||||||| Sbjct: 741 acatgtattctctttggagatgctgctggagctgtagtggtgcagtcatgtgatgctgag 800 Query: 177 gaagatgg 184 |||||||| Sbjct: 801 gaagatgg 808
>gb|U15934.1|CWKAS3B Cuphea wrightii beta-ketoacyl-ACP synthase III (KAS3B) mRNA, complete cds Length = 1827 Score = 48.1 bits (24), Expect = 0.026 Identities = 75/92 (81%) Strand = Plus / Plus Query: 93 tatgtggattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgtt 152 ||||| || ||||| ||| |||| || ||||| ||||| || ||||| ||||||||||| Sbjct: 869 tatgttgactggaccgatcgaggaacctgtattctctttggagatgcagctggtgctgtg 928 Query: 153 ttggtccagtcttgcaatgctgatgaagatgg 184 | || ||||| ||| ||||||| |||||||| Sbjct: 929 cttgttcagtcctgcgatgctgaggaagatgg 960 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgtacgttgcgtgccaca 373 ||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||| || Sbjct: 1096 ttcttgcatccaaatgaatggtaaagaggtcttccgcttcgcttgccgttgcgtgcctca 1155 Query: 374 gtc 376 ||| Sbjct: 1156 gtc 1158
>gb|AF134854.1|AF134854 Cuphea hookeriana acyl-ACP carrier protein synthase III-2 (KAS3-2) mRNA, complete cds Length = 1689 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgct 356 |||||||||| ||||||| || || ||||| |||||||||||| Sbjct: 1070 ttcttgcattcaaatgaacggtaaagaggtattccgctttgct 1112
>gb|U30600.1|APU30600 Allium porrum 3-ketoacyl carrier protein synthase III mRNA, complete cds Length = 1456 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctgg 145 |||||||| |||||||| || || || || ||||||||||||||||| Sbjct: 722 gattggactgatagaggaacgtgcattctattcggtgatgctgctgg 768
>emb|Z22771.1|SOKASIIIA S.oleracea 3-ketoacyl-acyl carrier protein synthase III (KAS III) Length = 1880 Score = 44.1 bits (22), Expect = 0.41 Identities = 43/50 (86%) Strand = Plus / Plus Query: 102 tggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 ||||| ||||||||||| || || || || |||||||||||||| ||||| Sbjct: 815 tggactgatagaggtacttgcatactttttggtgatgctgctggagctgt 864
>ref|NM_104942.2| Arabidopsis thaliana KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier protein] synthase AT1G62640 (KAS III) transcript variant AT1G62640.1 mRNA, complete cds Length = 1797 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1080 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1124 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 856 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 908
>ref|NM_001036144.1| Arabidopsis thaliana KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier protein] synthase AT1G62640 (KAS III) transcript variant AT1G62640.2 mRNA, complete cds Length = 1726 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1037 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1081 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 813 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 865
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 105 acagatagaggtacatgtatcctcttcggtgatgctgctgg 145 ||||| |||||||||||||| || || ||||||| |||||| Sbjct: 1855926 acagacagaggtacatgtattctttttggtgatggtgctgg 1855886
>emb|Y11689.1|ATKASIIIG A.thaliana KAS III gene Length = 2640 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1927 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1971 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 1416 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 1468
>gb|AY091275.1| Arabidopsis thaliana putative 3-ketoacyl-acyl carrier protein synthase III (KAS III) (At1g62640) mRNA, complete cds Length = 1246 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 864 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 908 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 640 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 692
>gb|AY063804.1| Arabidopsis thaliana putative 3-ketoacyl-acyl carrier protein synthase III (KAS III) (At1g62640) mRNA, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1080 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1124 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 856 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 908
>emb|AL844584.4| Mouse DNA sequence from clone RP23-309F17 on chromosome 11 Contains the 5' end of a variant of the Sgcd gene for sarcoglycan delta (dystrophin-associated glycoprotein) and a CpG island, complete sequence Length = 196442 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cattgaaatgaatggaaagga 340 ||||||||||||||||||||| Sbjct: 193129 cattgaaatgaatggaaagga 193149
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 gaagccggcctacctgcctcc 416 ||||||||||||||||||||| Sbjct: 4605545 gaagccggcctacctgcctcc 4605565
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 tcttgcattgaaatgaatgga 335 ||||||||||||||||||||| Sbjct: 3298 tcttgcattgaaatgaatgga 3318
>emb|BX813454.1|CNS0AC6P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZE09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1611 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1017 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1061 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 793 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 845
>emb|BX818522.1|CNS0AB4P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZG02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1575 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1053 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1097 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 829 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 881
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence Length = 86801 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 7125 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 7169 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 6614 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 6666
>gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis thaliana BAC T3P18 from Chromosome 1, complete sequence Length = 97054 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 85145 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 85189 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 84634 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 84686
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 attgttggtttaattacagct 26 ||||||||||||||||||||| Sbjct: 1142665 attgttggtttaattacagct 1142645
>emb|CT486004.9| Mouse DNA sequence from clone RP23-424K3 on chromosome 9, complete sequence Length = 212874 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ggtgatgctgctggtgctgtt 152 ||||||||||||||||||||| Sbjct: 182246 ggtgatgctgctggtgctgtt 182226
>emb|AL929471.16| Mouse DNA sequence from clone RP23-289F24 on chromosome 4, complete sequence Length = 146547 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 tgctaggtttctgtgtgcaaa 207 ||||||||||||||||||||| Sbjct: 61576 tgctaggtttctgtgtgcaaa 61556
>gb|AC173340.1| Mus musculus BAC clone RP24-257F22 from chromosome 9, complete sequence Length = 195116 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ggtgatgctgctggtgctgtt 152 ||||||||||||||||||||| Sbjct: 152282 ggtgatgctgctggtgctgtt 152302
>dbj|AP004500.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05P21, TM0032, complete sequence Length = 106632 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 294 ccaccaaagaagaccaacttttcttgcat 322 ||||| |||||||| |||||||||||||| Sbjct: 32954 ccaccgaagaagacaaacttttcttgcat 32982
>gb|U15935.1|CWKAS3A Cuphea wrightii beta-ketoacyl-ACP synthase III (KAS3A) mRNA, complete cds Length = 1695 Score = 42.1 bits (21), Expect = 1.6 Identities = 54/65 (83%) Strand = Plus / Plus Query: 120 tgtatcctcttcggtgatgctgctggtgctgttttggtccagtcttgcaatgctgatgaa 179 ||||| ||||| || ||||||||||| ||||| |||| ||||| || ||||||| ||| Sbjct: 872 tgtattctctttggagatgctgctggagctgtagtggtgcagtcctgtgatgctgaggaa 931 Query: 180 gatgg 184 ||||| Sbjct: 932 gatgg 936
>gb|L31891.1|ATHKASIII Arabidopsis thaliana 3-ketoacyl-acyl carrier protein synthase III (KAS III) mRNA, complete cds Length = 1748 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 314 ttcttgcattgaaatgaatggaaaggaggttttccgctttgctgt 358 |||||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct: 1034 ttcttgtattcagatgaatggaaaagaggtctttcgctttgctgt 1078 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatgctgctggtgctgt 151 |||||||| |||||||| || || || || || || ||||||||||||||||| Sbjct: 810 gattggacggatagagggacttgcattctatttggagatgctgctggtgctgt 862
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 cagtccatcgaaaaggcgct 391 |||||||||||||||||||| Sbjct: 925823 cagtccatcgaaaaggcgct 925804
>ref|XM_322299.1| Neurospora crassa OR74A predicted protein (NCU00214.1) partial mRNA Length = 507 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cggtgatgctgctggtgctg 150 |||||||||||||||||||| Sbjct: 441 cggtgatgctgctggtgctg 460
>ref|XM_951506.1| Neurospora crassa OR74A hypothetical protein (NCU00214.1) partial mRNA Length = 507 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cggtgatgctgctggtgctg 150 |||||||||||||||||||| Sbjct: 441 cggtgatgctgctggtgctg 460
>emb|Z73896.1|CEF09E8 Caenorhabditis elegans Cosmid F09E8, complete sequence Length = 40124 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 ttgcaatgctgatgaagatggttt 187 ||||| |||||||||||||||||| Sbjct: 23002 ttgcagtgctgatgaagatggttt 23025
>emb|CR956377.9| Pig DNA sequence from clone PigE-220E19 on chromosome 7, complete sequence Length = 222390 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tggaaaggaggttttccgct 351 |||||||||||||||||||| Sbjct: 35800 tggaaaggaggttttccgct 35781
>emb|CR956388.7| Pig DNA sequence from clone PigI-736G5 on chromosome 7, complete sequence Length = 151383 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tggaaaggaggttttccgct 351 |||||||||||||||||||| Sbjct: 65326 tggaaaggaggttttccgct 65307
>gb|AC128862.4| Rattus norvegicus 4 BAC CH230-419L6 (Children's Hospital Oakland Research Institute) complete sequence Length = 184149 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tgctaggtttctgtgtgcaa 206 |||||||||||||||||||| Sbjct: 96936 tgctaggtttctgtgtgcaa 96917
>gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence Length = 259603 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gatggtttgctaggtttctgtgtgcaaa 207 |||||||||||||| | ||||||||||| Sbjct: 169586 gatggtttgctaggctcctgtgtgcaaa 169613
>emb|CR848031.5| Zebrafish DNA sequence from clone DKEY-288I10 in linkage group 14, complete sequence Length = 160671 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tggaggtattaaaaatgtcc 63 |||||||||||||||||||| Sbjct: 33482 tggaggtattaaaaatgtcc 33463
>emb|AL627447.12| Human DNA sequence from clone RP11-619F23 on chromosome 10 Contains part of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1 and a novel gene, complete sequence Length = 52539 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tcttgcaatgctgatgaaga 181 |||||||||||||||||||| Sbjct: 50375 tcttgcaatgctgatgaaga 50394
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 99 gattggacagatagaggtacatgtatcctcttcggtgatg 138 |||||||||||| | || || |||||||| |||||||||| Sbjct: 1683148 gattggacagatcgtggcacctgtatccttttcggtgatg 1683187
>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12 Contains part of a novel ring finger gene, a novel zinc finger pseudogene, a novel zinc finger gene and a novel gene similar to valop (vertebrate ancient long opsin), complete sequence Length = 165151 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tggaggtattaaaaatgtcc 63 |||||||||||||||||||| Sbjct: 126208 tggaggtattaaaaatgtcc 126189
>emb|AJ305234.1|BSU305234 Brucella suis chvE gene, gguA gene, gguB gene and ORF1 Length = 5597 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cagtccatcgaaaaggcgct 391 |||||||||||||||||||| Sbjct: 844 cagtccatcgaaaaggcgct 863
>gb|AC112222.2| Homo sapiens chromosome 3 clone RP11-114A11, complete sequence Length = 151031 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aacttttcttgcattgaaat 328 |||||||||||||||||||| Sbjct: 62505 aacttttcttgcattgaaat 62524
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 tatagattggctgttgctac 438 |||||||||||||||||||| Sbjct: 3644067 tatagattggctgttgctac 3644086
>gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome 16, complete sequence Length = 178958 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaaatgaatggaaaggaggt 343 |||||||||||||||||||| Sbjct: 155044 gaaatgaatggaaaggaggt 155063
>gb|AE009673.1| Brucella melitensis 16M chromosome II, section 35 of 107 of the complete sequence Length = 10817 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cagtccatcgaaaaggcgct 391 |||||||||||||||||||| Sbjct: 6152 cagtccatcgaaaaggcgct 6171
>ref|NM_001004132.1| Rattus norvegicus PCTAIRE-motif protein kinase 1 (Pctk1), transcript variant 1, mRNA Length = 1791 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 caagaccaatggtgtccctg 288 |||||||||||||||||||| Sbjct: 88 caagaccaatggtgtccctg 107
>ref|NM_031077.1| Rattus norvegicus PCTAIRE-motif protein kinase 1 (Pctk1), transcript variant 2, mRNA Length = 3111 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 caagaccaatggtgtccctg 288 |||||||||||||||||||| Sbjct: 316 caagaccaatggtgtccctg 335
>dbj|AB196698.1| Daucus carota DcNLP gene for nucellin-like protein, complete cds Length = 2358 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 accaacttttcttgcattga 325 |||||||||||||||||||| Sbjct: 2157 accaacttttcttgcattga 2138
>gb|U36444.1|RRU36444 Rattus norvegicus PCTAIRE-1 protein kinase mRNA, alternatively spliced, complete cds Length = 3111 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 caagaccaatggtgtccctg 288 |||||||||||||||||||| Sbjct: 316 caagaccaatggtgtccctg 335
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 gtgatgctgctggtgctgtt 152 |||||||||||||||||||| Sbjct: 4214897 gtgatgctgctggtgctgtt 4214916
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cagtccatcgaaaaggcgct 391 |||||||||||||||||||| Sbjct: 291418 cagtccatcgaaaaggcgct 291437
>gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, complete sequence Length = 163687 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gaaatgaatggaaaggaggt 343 |||||||||||||||||||| Sbjct: 154610 gaaatgaatggaaaggaggt 154591
>gb|BC078711.1| Rattus norvegicus PCTAIRE-motif protein kinase 1, transcript variant 1, mRNA (cDNA clone MGC:93131 IMAGE:7112874), complete cds Length = 1791 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 caagaccaatggtgtccctg 288 |||||||||||||||||||| Sbjct: 88 caagaccaatggtgtccctg 107
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cggtgatgctgctggtgctg 150 |||||||||||||||||||| Sbjct: 2096164 cggtgatgctgctggtgctg 2096183
>gb|AC116474.13| Mus musculus chromosome 17, clone RP23-386F9, complete sequence Length = 221805 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gctgctggtgctgttttggt 157 |||||||||||||||||||| Sbjct: 10466 gctgctggtgctgttttggt 10447
>emb|CT573017.5| Mouse DNA sequence from clone RP24-309J23 on chromosome 17, complete sequence Length = 157643 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gctgctggtgctgttttggt 157 |||||||||||||||||||| Sbjct: 66012 gctgctggtgctgttttggt 65993
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cagtccatcgaaaaggcgct 391 |||||||||||||||||||| Sbjct: 291487 cagtccatcgaaaaggcgct 291506
>emb|AL845498.9| Mouse DNA sequence from clone RP23-222D20 on chromosome 2, complete sequence Length = 154935 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 atggtgtccctggcttccca 296 |||||||||||||||||||| Sbjct: 100824 atggtgtccctggcttccca 100843 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,432,861 Number of Sequences: 3902068 Number of extensions: 4432861 Number of successful extensions: 87632 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87250 Number of HSP's gapped (non-prelim): 369 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)