ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags5j18 |
|---|---|
| Clone Library Name | barley_pub |
>H1_WHEAT (P27806) Histone H1| Length = 238 Score = 102 bits (253), Expect(2) = 1e-25 Identities = 50/55 (90%), Positives = 53/55 (96%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HPSYAEMVSEAIAALKER GSST+AIGKF E+KHKAHLPANFRK+LLTQIKKLVA Sbjct: 55 HPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVA 109 Score = 32.0 bits (71), Expect(2) = 1e-25 Identities = 17/23 (73%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +1 Query: 61 MSTDVVA-DIPVPQVEATADPVV 126 MSTDV A DIPVPQVE AD V Sbjct: 1 MSTDVAAADIPVPQVEVAADAAV 23
>H1_MAIZE (P23444) Histone H1| Length = 245 Score = 77.0 bits (188), Expect = 1e-14 Identities = 39/55 (70%), Positives = 44/55 (80%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 H YAEMVSEAI +LKER GSS+ AI KF E+KHKA LP NFRK+L Q+KKLVA Sbjct: 49 HLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVA 103
>H1_EUPES (Q9M5W4) Histone H1| Length = 229 Score = 71.6 bits (174), Expect = 4e-13 Identities = 36/55 (65%), Positives = 44/55 (80%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HPS+ EM+S+AI+ LKER GSS AI KF E+KHK LP+NFRK+LL +KKLVA Sbjct: 51 HPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVA 104
>H1_LYCES (P37218) Histone H1| Length = 287 Score = 68.2 bits (165), Expect = 5e-12 Identities = 35/55 (63%), Positives = 42/55 (76%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP Y EM+ +AI LKER GSS AI KF EEK K+ LP+NF+K+LLTQ+KK VA Sbjct: 56 HPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKS-LPSNFKKLLLTQLKKFVA 109
>H12_ARATH (P26569) Histone H1.2| Length = 273 Score = 67.8 bits (164), Expect = 6e-12 Identities = 34/55 (61%), Positives = 41/55 (74%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP+Y EM+ +AI LKER GSS AI KF EEKHK+ LP FRK+LL +K+LVA Sbjct: 62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVA 115
>H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)| Length = 265 Score = 66.2 bits (160), Expect = 2e-11 Identities = 33/55 (60%), Positives = 41/55 (74%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP+Y EM+ +AI +LKE+ GSS AI KF EEK K LPANF+K+LL +KK VA Sbjct: 62 HPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVA 115
>H1_LYCPN (P40267) Histone H1| Length = 202 Score = 66.2 bits (160), Expect = 2e-11 Identities = 30/55 (54%), Positives = 39/55 (70%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP Y +M+ EA+ AL E+GGSS A+ K+ E+KHK LPANFRK+L Q+K A Sbjct: 49 HPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAA 103
>H11_ARATH (P26568) Histone H1.1| Length = 274 Score = 63.9 bits (154), Expect = 9e-11 Identities = 33/55 (60%), Positives = 39/55 (70%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP+Y EM+ +AI LKER GSS AI KF EEK K LP FRK+LL +K+LVA Sbjct: 62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVA 115
>H11_VOLCA (Q08864) Histone H1-I| Length = 260 Score = 46.6 bits (109), Expect = 1e-05 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHL-PANFRKMLLTQIKKLV 364 HP Y EMV +AI LKER GSS A+ KF E K+ + NF K L +K V Sbjct: 58 HPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFV 112
>H1B_STRPU (P15869) Histone H1-beta, late embryonic| Length = 211 Score = 44.7 bits (104), Expect = 6e-05 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPAN---FRKMLLTQIKK 358 HPS +EMV AI ALKERGGSS AI K+ E+ + + ++ L+T ++K Sbjct: 18 HPSSSEMVLAAITALKERGGSSAQAIRKYIEKNYTVDIKKQAIFIKRALITGVEK 72
>H1_ASCIM (Q9UV33) Histone H1| Length = 213 Score = 42.7 bits (99), Expect = 2e-04 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEE--KHKAHLPANFRKMLLTQIKK 358 HPSY EM+++AI LKER GSS AI KF + K K + F + L ++K Sbjct: 27 HPSYKEMLTKAITELKERNGSSRQAIKKFIQSNFKVKDNFDVQFNQALRRGVEK 80
>H12_VOLCA (Q08865) Histone H1-II| Length = 240 Score = 42.4 bits (98), Expect = 3e-04 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHL-PANFRKMLLTQIKKLV 364 HP Y +MV++AI +LKER GSS A+ KF E K+ + F K L +K V Sbjct: 24 HPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFV 78
>H1_DICDI (P54671) Histone H1| Length = 179 Score = 42.4 bits (98), Expect = 3e-04 Identities = 24/55 (43%), Positives = 32/55 (58%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP+Y M+S AIA K+R GSS AI K+ E + P F+ L +K+LVA Sbjct: 23 HPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNV-APDTFKTQLKLALKRLVA 76
>H1E_CHIPA (P40262) Histone H1E| Length = 235 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/35 (57%), Positives = 24/35 (68%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +EMV AI LKERGGSS +AI KF ++K Sbjct: 51 HPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYK 85
>H1E_CHITE (P40278) Histone H1E| Length = 237 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/35 (57%), Positives = 24/35 (68%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +EMV AI LKERGGSS +AI KF ++K Sbjct: 51 HPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYK 85
>H1O_CHITH (Q07134) Histone H1, orphon| Length = 244 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/35 (54%), Positives = 24/35 (68%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +EMV A+ LKERGGSS +AI KF ++K Sbjct: 54 HPPVSEMVVNAVTTLKERGGSSLIAIKKFVAAQYK 88
>H5_CAIMO (P06513) Histone H5| Length = 193 Score = 40.4 bits (93), Expect = 0.001 Identities = 23/55 (41%), Positives = 34/55 (61%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HPSY+EM+ AI A K RGGSS +I K+ + +K A+ + L I++L+A Sbjct: 26 HPSYSEMIVAAIRAEKSRGGSSRQSIQKYVKSHYKVGQHADLQIKL--SIRRLLA 78
>H5_CHICK (P02259) Histone H5| Length = 189 Score = 40.0 bits (92), Expect = 0.001 Identities = 22/55 (40%), Positives = 35/55 (63%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP+Y+EM++ AI A K RGGSS +I K+ + +K A+ + L I++L+A Sbjct: 25 HPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKL--SIRRLLA 77
>H5_ANSAN (P02258) Histone H5| Length = 193 Score = 39.7 bits (91), Expect = 0.002 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPAN------FRKMLLTQIKK 358 HP+Y+EM++ AI A K RGGSS +I K+ + +K A+ R++L T + K Sbjct: 26 HPTYSEMIAAAIRADKSRGGSSRQSIQKYVKSHYKVGQHADLQIKLAIRRLLTTGVLK 83
>H1A_OLILU (P82898) Histone H1A (Fragment)| Length = 47 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/46 (41%), Positives = 27/46 (58%) Frame = +2 Query: 206 PSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLL 343 P+Y +MV +AI ALK+R GSS AI K+ E K ++ + L Sbjct: 1 PTYYDMVKDAIVALKDRNGSSMQAIKKYIEANQKVEFKQHYLRAAL 46
>H13_GLYBA (P40265) Histone H1-III| Length = 228 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/35 (57%), Positives = 23/35 (65%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +EMV AI LKERGGSS AI KF ++K Sbjct: 40 HPPVSEMVVNAIKTLKERGGSSLQAIKKFLAAQYK 74
>H15_CAEEL (O01833) Histone H1.5 (Histone H1-like protein 5)| Length = 224 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 9/59 (15%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKH---------KAHLPANFRKMLLTQI 352 HP + M++EA++ LK+R GSS VAI KF K+ AHL + +K +++++ Sbjct: 37 HPPFINMITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKV 95
>H1C_CHITE (P40277) Histone H1C| Length = 221 Score = 39.3 bits (90), Expect = 0.002 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKA---HLPANFRKMLLTQIKK 358 HP +EMV A+ LKERGGSS AI KF ++K L +K L + ++K Sbjct: 39 HPPVSEMVFNAVKTLKERGGSSLQAIKKFLIAQYKVDVDKLDTFIKKYLKSAVEK 93
>H1B_CHITE (P40276) Histone H1B| Length = 232 Score = 39.3 bits (90), Expect = 0.002 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKA---HLPANFRKMLLTQIKK 358 HP +EMV A+ LKERGGSS AI KF ++K L +K L + ++K Sbjct: 40 HPPVSEMVVNAVKTLKERGGSSLQAIKKFLVAQYKVDVDKLAPFIKKYLKSAVEK 94
>H12_GLYBA (P40264) Histone H1-II| Length = 232 Score = 39.3 bits (90), Expect = 0.002 Identities = 20/35 (57%), Positives = 23/35 (65%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +EMV AI LKERGGSS AI KF ++K Sbjct: 40 HPPVSEMVVNAIKTLKERGGSSLQAIKKFLVAQYK 74
>H11_GLYSA (P40266) Histone H1-I| Length = 233 Score = 38.9 bits (89), Expect = 0.003 Identities = 22/54 (40%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP +EMV A+ L E+GGSS +AI KF +K + + LL IKK + Sbjct: 52 HPPVSEMVVNALKTLNEKGGSSVIAIKKFLVATYKVEI-----EKLLPFIKKFL 100
>H11_GLYBA (P40263) Histone H1-I| Length = 233 Score = 38.9 bits (89), Expect = 0.003 Identities = 22/54 (40%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP +EMV A+ L E+GGSS +AI KF +K + + LL IKK + Sbjct: 52 HPPVSEMVVNALKTLNEKGGSSVIAIKKFLVATYKVEI-----EKLLPFIKKFL 100
>H1_LYTPI (P06144) Late histone H1| Length = 210 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/38 (50%), Positives = 24/38 (63%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHL 316 HP ++MV AI ALKERGGSS AI K+ +K + Sbjct: 18 HPPTSQMVVAAITALKERGGSSNQAIKKYIAANYKVDI 55
>H1G_STRPU (P07796) Histone H1-gamma, late| Length = 217 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/29 (62%), Positives = 22/29 (75%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKF 289 HP ++MV A+ ALKERGGSST AI K+ Sbjct: 18 HPPSSQMVVAAVTALKERGGSSTQAIKKY 46
>H1_CHITH (P21895) Histone H1| Length = 231 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKA---HLPANFRKMLLTQIKK 358 HP ++M+ AI LKERGGSS AI KF ++K L +K L + ++K Sbjct: 39 HPPVSDMIVNAIKTLKERGGSSVQAIKKFLVAQYKVDTDKLSPFIKKYLKSAVEK 93
>H1_ASHGO (Q75C22) Histone H1| Length = 225 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/33 (48%), Positives = 23/33 (69%) Frame = +2 Query: 206 PSYAEMVSEAIAALKERGGSSTVAIGKFXEEKH 304 P Y +++ EA+ +L ERGGSS AI KF +K+ Sbjct: 25 PKYKDLIVEAVVSLAERGGSSRQAIKKFIRDKY 57
>H1_ECHCR (P02257) Histone H1, gonadal (Fragment)| Length = 171 Score = 37.0 bits (84), Expect = 0.012 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPA---NFRKMLLTQIK 355 HP +M++ AIAA KER GSS I + K++ + A + R+ L Q+K Sbjct: 38 HPPVIDMITAAIAAQKERRGSSVAKIQSYIAAKYRCDINALNPHIRRALKNQVK 91
>H11_CAEEL (P10771) Histone H1.1| Length = 207 Score = 37.0 bits (84), Expect = 0.012 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP Y M+ EAI LK+R G+S AI KF + +K Sbjct: 37 HPPYINMIKEAIKQLKDRKGASKQAILKFISQNYK 71
>H1_TIGCA (P35060) Histone H1| Length = 181 Score = 37.0 bits (84), Expect = 0.012 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPAN---FRKML--LTQIKKLV 364 HP + MV AI ALKER GSS AI K+ +K + N +K L L + KKLV Sbjct: 21 HPPTSVMVMAAIKALKERNGSSLPAIKKYIAANYKVDVVKNAHFIKKALKSLVEKKKLV 79
>H1A_PLADU (P06894) Histone H1A, sperm| Length = 121 Score = 37.0 bits (84), Expect = 0.012 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK---AHLPANFRKMLLTQIKK 358 HP A MV AI LKER GSS VAI K+ ++ A L RK + +K+ Sbjct: 11 HPPVATMVVTAILGLKERKGSSMVAIKKYIAANYRVDVARLAPFIRKFIRKAVKQ 65
>H16_CAEEL (O16277) Putative histone H1.6 (Histone H1-like protein 6)| Length = 189 Score = 37.0 bits (84), Expect = 0.012 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP + MV+ AI++LKER GSS +AI K+ +K Sbjct: 34 HPPFINMVTAAISSLKERKGSSKIAILKYITANYK 68
>H12_CAEEL (P15796) Histone H1.2 (Histone H1-like protein 2)| Length = 190 Score = 37.0 bits (84), Expect = 0.012 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP + MV+ AI++LKER GSS +AI K+ +K Sbjct: 37 HPPFINMVTAAISSLKERKGSSKIAILKYITANYK 71
>H11_WHEAT (P15871) Histone H1.1 (Fragment)| Length = 25 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/25 (80%), Positives = 20/25 (80%) Frame = +2 Query: 221 MVSEAIAALKERGGSSTVAIGKFXE 295 MVSEAIAALKER GSS AIGK E Sbjct: 1 MVSEAIAALKEREGSSEFAIGKKKE 25
>H1_NEUCR (Q8J0U2) Histone H1| Length = 236 Score = 35.8 bits (81), Expect = 0.026 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKF 289 H SY +M+++AI ALK+R GSS A+ K+ Sbjct: 37 HASYLDMITDAIVALKDRAGSSRQALKKY 65
>H13_CAEEL (Q19743) Histone H1.3 (Histone H1-like protein 3)| Length = 207 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKH 304 HP Y MV+ AI LKER GSS +AI K+ + + Sbjct: 37 HPPYINMVTAAINGLKERKGSSKIAILKYITKNY 70
>H10_RAT (P43278) Histone H1.0 (H1(0)) (Histone H1')| Length = 193 Score = 35.8 bits (81), Expect = 0.026 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP Y++M+ AI A K R GSS +I K+ + +K + N + IK+LV Sbjct: 24 HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYK--VGENADSQIKLSIKRLV 75
>H10_MOUSE (P10922) Histone H1' (H1.0) (H1(0))| Length = 193 Score = 35.8 bits (81), Expect = 0.026 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP Y++M+ AI A K R GSS +I K+ + +K + N + IK+LV Sbjct: 24 HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYK--VGENADSQIKLSIKRLV 75
>H10_HUMAN (P07305) Histone H1.0 (H1(0)) (Histone H1')| Length = 193 Score = 35.8 bits (81), Expect = 0.026 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP Y++M+ AI A K R GSS +I K+ + +K + N + IK+LV Sbjct: 24 HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYK--VGENADSQIKLSIKRLV 75
>H1B_OLILU (P82899) Histone H1B (Fragment)| Length = 42 Score = 35.8 bits (81), Expect = 0.026 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = +2 Query: 209 SYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANF 328 +Y E++ AI ALKER GSS AI K+ E +K F Sbjct: 1 TYYELIKAAILALKERNGSSAQAIKKYILENNKIEFQQTF 40
>H1_DROHY (P17268) Histone H1| Length = 249 Score = 35.4 bits (80), Expect = 0.034 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +MV +I LKERGGSS +AI K+ +K Sbjct: 46 HPPTQQMVDASIQNLKERGGSSLLAIKKYISATYK 80
>H5A_XENLA (P22844) Histone H5A (XLH5A) (H1D) (H1-SA)| Length = 196 Score = 35.4 bits (80), Expect = 0.034 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP Y++M+ A+ A K R GSS +I K+ + +K + N + IK+LV Sbjct: 25 HPKYSDMILAAVQAEKSRSGSSRQSIQKYIKNHYK--VGENADSQIKLSIKRLV 76
>H1_YEAST (P53551) Histone H1| Length = 258 Score = 35.0 bits (79), Expect = 0.045 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +2 Query: 209 SYAEMVSEAIAALKERGGSSTVAIGKFXEEKH 304 SY E++ E + ALKER GSS A+ KF +E + Sbjct: 46 SYRELIIEGLTALKERKGSSRPALKKFIKENY 77 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +2 Query: 209 SYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHL--PANFRKMLLTQIKKLV 364 +Y EM+ +++ L + GSS + + K+ ++ + L +NF + + IKK V Sbjct: 179 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCV 232
>H1_DROME (P02255) Histone H1| Length = 256 Score = 35.0 bits (79), Expect = 0.045 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +MV +I LKERGGSS +AI K+ +K Sbjct: 46 HPPTQQMVDASIKNLKERGGSSLLAIKKYITATYK 80
>H5B_XENLA (P22845) Histone H5B (XLH5B) (H1E) (H1-SB)| Length = 194 Score = 35.0 bits (79), Expect = 0.045 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLV 364 HP Y++M+ +A+ A K R GSS +I K+ K+ + N + IK+LV Sbjct: 23 HPKYSDMILDAVQAKKSRSGSSRQSIQKYI--KNNYTVGENADSQIKLSIKRLV 74
>H13_DROVI (Q94972) Histone H1.3| Length = 250 Score = 34.7 bits (78), Expect = 0.059 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +MV +I LKERGGSS +AI K+ +K Sbjct: 45 HPPTQQMVDASIKNLKERGGSSLLAIKKYIGATYK 79
>H12_DROVI (Q94555) Histone H1.2| Length = 250 Score = 34.7 bits (78), Expect = 0.059 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +MV +I LKERGGSS +AI K+ +K Sbjct: 45 HPPTQQMVDASIKNLKERGGSSLLAIKKYIGATYK 79
>H11_DROVI (Q24704) Histone H1.1| Length = 250 Score = 34.7 bits (78), Expect = 0.059 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 HP +MV +I LKERGGSS +AI K+ +K Sbjct: 45 HPPTQQMVDASIKNLKERGGSSLLAIKKYIGATYK 79
>H14_CAEEL (O17536) Histone H1.4 (Histone H1-like protein 4)| Length = 252 Score = 34.7 bits (78), Expect = 0.059 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPAN 325 HP + MV+EAI+++K+R G S AI K+ K+ AN Sbjct: 51 HPPFINMVTEAISSIKDRKGPSRAAILKYITTKYTLGDQAN 91
>H1E_STRPU (P19375) Histone H1, early embryonic| Length = 205 Score = 34.7 bits (78), Expect = 0.059 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKF 289 HP AEMV+ AI LK+R GSS AI K+ Sbjct: 18 HPPAAEMVATAITELKDRNGSSLQAIKKY 46
>H1A_CHITE (P40275) Histone H1A| Length = 232 Score = 34.7 bits (78), Expect = 0.059 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKA---HLPANFRKMLLTQIKK 358 H ++MV A+ LKERGGSS AI KF ++K L +K L + ++K Sbjct: 40 HLPVSDMVVNAVKTLKERGGSSVQAIKKFLVAQYKVDVDKLSPFIKKYLKSAVEK 94
>H1D_STRPU (P15870) Histone H1-delta| Length = 185 Score = 34.3 bits (77), Expect = 0.076 Identities = 14/29 (48%), Positives = 22/29 (75%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKF 289 HP Y++M++ A+ +LKE+ GSS AI K+ Sbjct: 33 HPKYSDMIASALESLKEKKGSSRQAILKY 61
>H1_PARAN (P02256) Histone H1, gonadal| Length = 248 Score = 34.3 bits (77), Expect = 0.076 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFR 331 HP EMV AI A+KER GSS I K+++ AN+R Sbjct: 42 HPPVLEMVQAAITAMKERKGSSAAKI--------KSYMAANYR 76
>H1_EMENI (Q9P8F8) Histone H1| Length = 200 Score = 33.9 bits (76), Expect = 0.100 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHK 307 H SY +M+ +AI LKER GSS +I K+ +K Sbjct: 19 HTSYRDMIKDAILNLKERNGSSRQSIKKYVLANNK 53
>H1X_CAEEL (Q18336) Histone H1.X (Histone H1-like protein 1)| Length = 232 Score = 32.7 bits (73), Expect = 0.22 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKM---LLTQIKKLV 364 HPSY +M+ AI A+ GSS AI K+ + + H+ N K+ L + +KK V Sbjct: 37 HPSYMDMIKGAIQAIDNGTGSSKAAILKYIAQNY--HVGENLPKVNNHLRSVLKKAV 91
>H1L5_ENSMI (P27203) Histone H1-like protein EM5 (Fragment)| Length = 36 Score = 32.0 bits (71), Expect = 0.38 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +2 Query: 221 MVSEAIAALKERGGSSTVAIGKFXEEKHK 307 M++ A+ ALKERGGSS AI K+ + K Sbjct: 1 MITAAVGALKERGGSSRQAILKYIQANFK 29
>H1B_PLADU (P06895) Histone H1B, sperm| Length = 119 Score = 31.2 bits (69), Expect = 0.65 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +2 Query: 203 HPSYAEMVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 HP A V AI LK+R GSS VAI K+ + + A + ++K VA Sbjct: 9 HPPVATAVVAAILGLKDRKGSSMVAIKKYLAANYNVDV-ARLGPFIRRFVRKAVA 62
>H13_WHEAT (P15872) Histone H1.3 (Fragments)| Length = 31 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/49 (44%), Positives = 23/49 (46%) Frame = +2 Query: 221 MVSEAIAALKERGGSSTVAIGKFXEEKHKAHLPANFRKMLLTQIKKLVA 367 MVSEAI ALKER GS +LTQIKKLVA Sbjct: 1 MVSEAITALKERTGS------------------------MLTQIKKLVA 25
>HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)| Length = 176 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 206 PSYAEMVSEAIAALKERGGSSTVAIGKFXE 295 P Y EM+ + + AL E GS+ AI K+ E Sbjct: 13 PPYPEMIVKTLEALNEPNGSNKSAISKYIE 42
>F107A_PONPY (Q5NVP3) Protein FAM107A| Length = 144 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 184 EEAHRVPPLLRRDGVGGHRRPEGKRRVEHRRDRQVXR 294 +E HR + R G+G +PE +R +EHRR Q+ + Sbjct: 45 QELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIK 81
>F107A_HUMAN (O95990) Protein FAM107A (Down-regulated in renal cell carcinoma 1)| (Protein TU3A) Length = 144 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 184 EEAHRVPPLLRRDGVGGHRRPEGKRRVEHRRDRQVXR 294 +E HR + R G+G +PE +R +EHRR Q+ + Sbjct: 45 QELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIK 81
>ZBT37_HUMAN (Q5TC79) Zinc finger and BTB domain-containing protein 37| Length = 503 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 181 PEEAHRVPPLLRRDGVGGHRRPEGKRR 261 P E+HRV P L R H P+G RR Sbjct: 149 PPESHRVTPNLNRSLSPRHNTPKGNRR 175
>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)| (11 kDa core protein) Length = 79 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 214 RRDGVGGHRRPEGKRRVEHRRDRQVXR 294 RR G+ GH G RR HRR R R Sbjct: 19 RRRGMAGHGLTGGMRRAHHRRRRASHR 45 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,877,535 Number of Sequences: 219361 Number of extensions: 417042 Number of successful extensions: 1207 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 1166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1202 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
