ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5j14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192705.1| Oryza sativa (japonica cultivar-group), predic... 165 2e-37
2dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
5dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
6ref|XM_815830.1| Trypanosoma cruzi strain CL Brener GTPase prote... 44 0.41
7emb|CR786571.6| Zebrafish DNA sequence from clone DKEY-234L24 in... 44 0.41
8gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.6
9ref|XM_780001.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
10ref|XM_571799.1| Cryptococcus neoformans var. neoformans JEC21 c... 42 1.6
11gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 1.6
12ref|XM_506929.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.5
13ref|XM_467361.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
14gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.5
15gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosom... 40 6.5
16gb|AC151742.9| Medicago truncatula clone mth2-83e4, complete seq... 40 6.5
17gb|AC146909.23| Medicago truncatula clone mth2-57e16, complete s... 40 6.5
18emb|CR378671.1| Photobacterium profundum SS9; segment 9/12 40 6.5
19emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i... 40 6.5
20gb|AC182685.2| Populus trichocarpa clone Pop1-37K2, complete seq... 40 6.5
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
22gb|AC154283.1| Mus musculus BAC clone RP24-279H4 from chromosome... 40 6.5
23gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-1... 40 6.5
24dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
25dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
26dbj|AK061066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
27dbj|AK059507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
28gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 6.5
29dbj|AP006700.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.5 
>ref|NM_192705.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2301

 Score =  165 bits (83), Expect = 2e-37
 Identities = 116/127 (91%)
 Strand = Plus / Plus

                                                                        
Query: 6    gaggagctcgagccgctcttcgactactcccgcgtgcagcccaccatcgacttctgcttc 65
            |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct: 1597 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 1656

                                                                        
Query: 66   gacgattccgacctcgagaagtcggacatcttcgtccactgcaacaagcgccccaaggtg 125
            |||||| ||||| | |||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 1657 gacgataccgacattgagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtg 1716

                   
Query: 126  gcggacg 132
            || ||||
Sbjct: 1717 gccgacg 1723
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>dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C07, full
           insert sequence
          Length = 1254

 Score =  165 bits (83), Expect = 2e-37
 Identities = 116/127 (91%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaggagctcgagccgctcttcgactactcccgcgtgcagcccaccatcgacttctgcttc 65
           |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct: 232 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 291

                                                                       
Query: 66  gacgattccgacctcgagaagtcggacatcttcgtccactgcaacaagcgccccaaggtg 125
           |||||| ||||| | |||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 292 gacgataccgacattgagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtg 351

                  
Query: 126 gcggacg 132
           || ||||
Sbjct: 352 gccgacg 358
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                            
Query: 6        gaggagctcgagccgctcttcgactactcccgcgtgcagcccaccatcgacttctgcttc 65
                |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct: 23930573 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 23930632

                    
Query: 66       gacg 69
                ||||
Sbjct: 23930633 gacg 23930636



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 81       gagaagtcggacatcttcgtccactgcaacaagcgccccaaggtggcggacg 132
                |||||||| |||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 23930775 gagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtggccgacg 23930826



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 334      ttcaaaaggttgttgaaaat 353
                ||||||||||||||||||||
Sbjct: 13914514 ttcaaaaggttgttgaaaat 13914495
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                         
Query: 6     gaggagctcgagccgctcttcgactactcccgcgtgcagcccaccatcgacttctgcttc 65
             |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct: 76977 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 77036

                 
Query: 66    gacg 69
             ||||
Sbjct: 77037 gacg 77040



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 81    gagaagtcggacatcttcgtccactgcaacaagcgccccaaggtggcggacg 132
             |||||||| |||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 77179 gagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtggccgacg 77230
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                         
Query: 6     gaggagctcgagccgctcttcgactactcccgcgtgcagcccaccatcgacttctgcttc 65
             |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct: 45095 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 45154

                 
Query: 66    gacg 69
             ||||
Sbjct: 45155 gacg 45158



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 81    gagaagtcggacatcttcgtccactgcaacaagcgccccaaggtggcggacg 132
             |||||||| |||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 45297 gagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtggccgacg 45348
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>ref|XM_815830.1| Trypanosoma cruzi strain CL Brener GTPase protein
           (Tc00.1047053504153.300) partial mRNA
          Length = 1524

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 330 gaatttcaaaaggttgttgaaa 351
           ||||||||||||||||||||||
Sbjct: 439 gaatttcaaaaggttgttgaaa 460
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>emb|CR786571.6| Zebrafish DNA sequence from clone DKEY-234L24 in linkage group 4,
              complete sequence
          Length = 182259

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 445    tctgcataatgtttcaggaaaa 466
              ||||||||||||||||||||||
Sbjct: 112860 tctgcataatgtttcaggaaaa 112839
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    ggtgaatttggatgatgagga 220
              |||||||||||||||||||||
Sbjct: 212551 ggtgaatttggatgatgagga 212571
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>ref|XM_780001.1| PREDICTED: Strongylocentrotus purpuratus similar to CG33556-PA
           (LOC579910), mRNA
          Length = 2100

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 311 acagaaactggttgatgatga 331
           |||||||||||||||||||||
Sbjct: 786 acagaaactggttgatgatga 806
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>ref|XM_571799.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 2256

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 ggtgaatttggatgatgagga 220
           |||||||||||||||||||||
Sbjct: 556 ggtgaatttggatgatgagga 576
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 296    aaagaaacaagaagtacagaa 316
              |||||||||||||||||||||
Sbjct: 473086 aaagaaacaagaagtacagaa 473106
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>ref|XM_506929.1| PREDICTED Oryza sativa (japonica cultivar-group), P0724B10.35 mRNA
          Length = 1198

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gctccaccgccgctgaagcc 247
           ||||||||||||||||||||
Sbjct: 126 gctccaccgccgctgaagcc 145
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>ref|XM_467361.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1189

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gctccaccgccgctgaagcc 247
           ||||||||||||||||||||
Sbjct: 146 gctccaccgccgctgaagcc 165
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 5       cgaggagctcgagccgctcttcga 28
               ||||| ||||||||||||||||||
Sbjct: 1827439 cgaggggctcgagccgctcttcga 1827462
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>gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosome 14, complete sequence
          Length = 178254

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    ataatgtttcaggaaaagga 469
              ||||||||||||||||||||
Sbjct: 139877 ataatgtttcaggaaaagga 139896
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>gb|AC151742.9| Medicago truncatula clone mth2-83e4, complete sequence
          Length = 99595

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 321   gttgatgatgaatttcaaaaggttgttg 348
             |||| ||||||||| |||||||||||||
Sbjct: 94805 gttgttgatgaattccaaaaggttgttg 94778
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>gb|AC146909.23| Medicago truncatula clone mth2-57e16, complete sequence
          Length = 121218

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 321    gttgatgatgaatttcaaaaggttgttg 348
              |||| ||||||||| |||||||||||||
Sbjct: 100211 gttgttgatgaattccaaaaggttgttg 100184
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>emb|CR378671.1| Photobacterium profundum SS9; segment 9/12
          Length = 349688

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   aagaaatcgaaagagaagat 445
             ||||||||||||||||||||
Sbjct: 52661 aagaaatcgaaagagaagat 52642
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>emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i23, COMPLETE SEQUENCE
          Length = 122746

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 321  gttgatgatgaatttcaaaaggttgttg 348
            |||| ||||||||| |||||||||||||
Sbjct: 3631 gttgttgatgaattccaaaaggttgttg 3604
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>gb|AC182685.2| Populus trichocarpa clone Pop1-37K2, complete sequence
          Length = 69711

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   ttgttgaaaatgttaagaaa 362
             ||||||||||||||||||||
Sbjct: 27436 ttgttgaaaatgttaagaaa 27455
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 228      gctccaccgccgctgaagcc 247
                ||||||||||||||||||||
Sbjct: 29088078 gctccaccgccgctgaagcc 29088097
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>gb|AC154283.1| Mus musculus BAC clone RP24-279H4 from chromosome 14, complete sequence
          Length = 192706

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   ataatgtttcaggaaaagga 469
             ||||||||||||||||||||
Sbjct: 18611 ataatgtttcaggaaaagga 18630
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>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence
          Length = 150242

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gaaaatgttaagaaagacat 367
             ||||||||||||||||||||
Sbjct: 49653 gaaaatgttaagaaagacat 49672
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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1051E10
          Length = 207782

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ttcaaaaggttgttgaaaat 353
             ||||||||||||||||||||
Sbjct: 74816 ttcaaaaggttgttgaaaat 74797
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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0724B10
          Length = 169143

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    gctccaccgccgctgaagcc 247
              ||||||||||||||||||||
Sbjct: 134243 gctccaccgccgctgaagcc 134262
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>dbj|AK061066.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B10, full
           insert sequence
          Length = 1189

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gctccaccgccgctgaagcc 247
           ||||||||||||||||||||
Sbjct: 146 gctccaccgccgctgaagcc 165
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>dbj|AK059507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A12, full
           insert sequence
          Length = 1198

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gctccaccgccgctgaagcc 247
           ||||||||||||||||||||
Sbjct: 126 gctccaccgccgctgaagcc 145
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 189     aaggccatggtggtgaatttggatgatg 216
               |||| ||||||||||| |||||||||||
Sbjct: 2105180 aaggtcatggtggtgactttggatgatg 2105153
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>dbj|AP006700.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H09, TM0550,
            complete sequence
          Length = 76403

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  ggtggtgaatttggatgatg 216
            ||||||||||||||||||||
Sbjct: 9947 ggtggtgaatttggatgatg 9966


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,740,829
Number of Sequences: 3902068
Number of extensions: 4740829
Number of successful extensions: 89160
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88923
Number of HSP's gapped (non-prelim): 237
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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