>GYRA_CAMFE (P47235) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 862

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
 Frame = +3

Query: 279 SFISDAGSVYKTKIDSAKNA------ATGLTDKDELIVI-----RSDESSGSGVLDNE-L 422
           +F +  G V +T +   KN       A  L D DEL+ +       DES      D E +
Sbjct: 615 AFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGV 674

Query: 423 TNLATWLEGSYQKADGKLNIPLKSGNSLTLLLNKEVDIKFASSLISLLKTIKRGI 587
           +NL T  E + + +       L+SG  L  +  K + IKFA + +  +  + RG+
Sbjct: 675 SNLQTISEDNSENS-------LESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGV 722

>RAD52_CANGA (Q6FSW2) DNA repair and recombination protein RAD52|
          Length = 505

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 23/91 (25%), Positives = 40/91 (43%)
 Frame = +3

Query: 207 LPKPFDRPRAVFLVQIDGSHDSVDSFISDAGSVYKTKIDSAKNAATGLTDKDELIVIRSD 386
           +P P D      L + D S+++ D+  S +  + K+ I S  N            +  S 
Sbjct: 370 IPNPIDDSTDSRLAENDKSNENDDTETSHSTEIEKSAISSVNNGTN---------ISGST 420

Query: 387 ESSGSGVLDNELTNLATWLEGSYQKADGKLN 479
           ESS + V  +  T+  T +E    KAD +++
Sbjct: 421 ESSVTTVPSHNSTSQTTNIEAKVDKADSQVS 451

>TRME_STRP1 (Q99ZU0) tRNA modification GTPase trmE|
          Length = 458

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
 Frame = +3

Query: 297 GSVYKTKIDSAKNAATGLTDKDELIVIRSDESSGSGVLDNELTNLATWLEGSYQKADGKL 476
           G V  T+ ++  +     TDK   I ++  + S S ++++    +   L      A  ++
Sbjct: 126 GRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTL------AQVEV 179

Query: 477 NIPLKSGNS---LTLLLNKEVDIKFASSLISLLKTIKRGIQVHEDFSGGIV 620
           NI     +    +T  L +E   +F S L SLL+T KRG  + E  S  I+
Sbjct: 180 NIDYPEYDDVEEMTTALLREKTQEFQSLLESLLRTAKRGKILREGLSTAII 230

>RAS1_YEAST (P01119) Ras-like protein 1 precursor|
          Length = 309

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
 Frame = +3

Query: 207 LPKPFDRPRAVFLVQIDGSHDSVDSFISDAGSVYKTKIDSAKNAATGLTDKD---ELIVI 377
           L  PF    A   + +D +  S+   + D G  Y +      N    + D +        
Sbjct: 145 LNAPFLETSAKQAINVDEAFYSLIRLVRDDGGKYNSMNRQLDNT-NEIRDSELTSSATAD 203

Query: 378 RSDESSGSGVLDNELTNLATWLEGSYQKA----DGKLNIPLKSGNSLTLLLNKEVDIKFA 545
           R  +++GS VLDN LTN  T   GS  K+    +G+        N +    N E + K++
Sbjct: 204 REKKNNGSYVLDNSLTNAGT---GSSSKSAVNHNGETTKRTDEKNYVNQNNNNEGNTKYS 260

Query: 546 SSLISLLKTIKRGIQ 590
           S+       I RG Q
Sbjct: 261 SNGNGNRSDISRGNQ 275

>SYH_MOUSE (Q61035) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 509

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 369 IVIRSDESSGSGVLDNELTNLATWLEGSYQKADGKLNIPLKSGNSLTLLLNKEVDIKFAS 548
           ++IR  +  G+ V+D  +  L   L G Y + D KL   LK      L L  ++ + FA 
Sbjct: 79  VIIRCFKRHGAEVIDTPVFELKETLTGKYGE-DSKLIYDLKDQGGELLSLRYDLTVPFAR 137

Query: 549 SL-ISLLKTIKR 581
            L ++ L  IKR
Sbjct: 138 YLAMNKLTNIKR 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,144,789
Number of Sequences: 219361
Number of extensions: 1546696
Number of successful extensions: 4411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4410
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)