ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5i20 |
|---|---|
| Clone Library Name | barley_pub |
>NKG2A_PANTR (Q95MI5) NKG2-A/NKG2-B type II integral membrane protein| (NKG2-A/B-activating NK receptor) (NK cell receptor A) (CD159a antigen) Length = 233 Score = 32.3 bits (72), Expect = 0.62 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = +3 Query: 171 DEQKLLKTFTKMSPAAWKAIIE---HAMTCKVGDTLYMHEIKESNMEFFFDAILQLVGVK 341 D ++ +K + +SP++W + H + + HEIK+S+ A+LQ+ G+K Sbjct: 158 DNEEEMKFLSIISPSSWIGVFRNSSHHPWVTINGLAFKHEIKDSDNAELNCAVLQVNGLK 217 Query: 342 FGDC 353 C Sbjct: 218 SAQC 221
>NKG2C_MACMU (Q9MZK6) NKG2-C type II integral membrane protein| (NKG2-C-activating NK receptor) (NK cell receptor C) (CD159c antigen) Length = 231 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = +3 Query: 171 DEQKLLKTFTKMSPAAWKAII---EHAMTCKVGDTLYMHEIKESNMEFFFDAILQLVGVK 341 D ++ +K T +SP+ W + H + + HEIK+S+ + A+L L +K Sbjct: 156 DNEEEMKFLTAISPSTWTGVFRDSSHHPWVTINGLTFKHEIKDSDHAEYNCAMLHLDRLK 215 Query: 342 FGDC 353 C Sbjct: 216 SVQC 219
>NKG2C_PANTR (Q9GME8) NKG2-C type II integral membrane protein| (NKG2-C-activating NK receptor) (NK cell receptor C) (CD159c antigen) Length = 233 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = +3 Query: 171 DEQKLLKTFTKMSPAAWKAIIE---HAMTCKVGDTLYMHEIKESNMEFFFDAILQLVGVK 341 D ++ +K +SP++W + H + + HEI +S+ A+LQ+ G+K Sbjct: 156 DNEEEMKFLATISPSSWIGVFRNSSHHPWVTINGLAFKHEIIDSDHAELNCAVLQVKGLK 215 Query: 342 FGDC 353 C Sbjct: 216 SAQC 219
>TRUD2_METJA (Q58759) Probable tRNA pseudouridine synthase D 2 (EC 5.4.99.-)| (tRNA-uridine isomerase D 2) (tRNA pseudouridylate synthase D 2) Length = 422 Score = 29.6 bits (65), Expect = 4.0 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 17/113 (15%) Frame = +3 Query: 3 GTRKERRVEGFEKHYPPKLSDEVWRLE--------------KIGRNGAYRQALSDSGIDT 140 G R V G +K PK+ + + LE + ++ + + + Sbjct: 132 GNRFTITVRGLKKEDIPKIKENLKYLEFGAPNYFDSQRFGSVFDKKFIAKEVIKGNYEEA 191 Query: 141 VQKLLQSYVKDEQKL---LKTFTKMSPAAWKAIIEHAMTCKVGDTLYMHEIKE 290 V+ LL Y K E+KL LK F + W I E+ + LY++ +KE Sbjct: 192 VKILLTKYKKSEKKLIKDLKRFIDKNWGDWDKIWEYIKENNIKSRLYVNMVKE 244
>SYY2_ENTFA (Q834C7) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 420 Score = 28.9 bits (63), Expect = 6.8 Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 24/176 (13%) Frame = +3 Query: 9 RKERRVEGFEKHYPPKLSDEVWRLEKIGRNGAYRQALSDSGIDTVQKLLQSYVKDEQKLL 188 R+E+ V+GF P + + K N + A S + Q + + +D K L Sbjct: 209 RREQEVQGFGLTMPLITKADGTKFGKTEGNAVWLDAEKTSPYEFYQFWINTDDRDVVKFL 268 Query: 189 KTFTKMS-----------------PAAWKAIIEHAMTCKVGDTLYMHEIKESNMEFFFD- 314 K FT ++ AA KA+ + T G+ Y +K S F D Sbjct: 269 KYFTFLTLDEIATIEEEFTANPGQRAAQKALAKEVTTLVHGEAAYHQAVKISEALFSGDI 328 Query: 315 AILQLVGVKFGDCYKPLDMIHPAEK-NLVETLKQKAYENMK-----DVQYDHIMIN 464 L +K G P + P ++ +LV+ L E K DVQ I +N Sbjct: 329 QSLTAEEIKQGFKDVPTYEVQPEDQLSLVDLLVTSKIEPSKRQAREDVQNGAIYVN 384
>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 882 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +3 Query: 57 LSDEVWRLEKIGRNGAYRQALSDSGIDTVQKLLQSYVKDEQKLLKTFTKMSP 212 L E+ R E I N ++ Q + + I+ +K +SY K +KLL++ +P Sbjct: 825 LLKEIKRSETILNNPSFLQKAASAKIEIEKKKYESYCKQYKKLLESKNNSNP 876
>PTPRG_CHICK (Q98936) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1422 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 159 SYVKDEQKLLKTFTKMSPAAWKAIIEHAMTCKVGDTLYMHEIK 287 S+ K+E + KTFTK S KAII H D LY+ ++ Sbjct: 386 SWTKNEDEKEKTFTKDSDKDLKAIISHVSP----DILYLFRVQ 424
>MERT_ACICA (Q52106) Mercuric transport protein (Mercury ion transport protein)| Length = 116 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +3 Query: 216 AWKAIIEHAMTCKVGDTLYMHEIKES-NMEFFFDAILQLVGVKF 344 AW+ I+ CK G+ + +++ + + F+F A+L LV + F Sbjct: 65 AWRRIVRPTAACKPGEVCAIPQVRTTYKLIFWFVAVLVLVALGF 108
>GPH_PASMU (Q9CKJ5) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 224 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 252 KVGDTLYMHEIKESNMEFFFDAILQLVGVKFGDCYKPLDMIHPAEKNLVETLKQKAY 422 + G TL +IK F G +G+ L +++P K+ +ETLKQK Y Sbjct: 65 QTGKTLNDEQIKALKRRF---------GFYYGENLCNLSVLYPNVKSTLETLKQKGY 112
>COFH_HALSA (Q9HNU8) FO synthase subunit 2 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2) Length = 500 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = +3 Query: 111 QALSDSGIDTVQKLLQSYVKDEQKLLKTFTKMSPAAWKAIIEHAMTCKVGDT---LYMHE 281 + L+D+G+DTV + DE + + KM+ W A +E A +G T +Y H Sbjct: 264 ETLADAGLDTVPGTAAEILVDEVRDVICPGKMTTDEWVAAMEAAADAGLGTTATIMYGHV 323 Query: 282 IKESNMEFFFDAILQL 329 ++ D I L Sbjct: 324 ENAAHRIHHLDVIRAL 339
>NKG2A_HUMAN (P26715) NKG2-A/NKG2-B type II integral membrane protein| (NKG2-A/B-activating NK receptor) (NK cell receptor A) (CD159a antigen) Length = 233 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +3 Query: 171 DEQKLLKTFTKMSPAAWKAIIE---HAMTCKVGDTLYMHEIKESNMEFFFDAILQLVGVK 341 D ++ +K + +SP++W + H + + HEIK+S+ A+LQ+ +K Sbjct: 158 DNEEEMKFLSIISPSSWIGVFRNSSHHPWVTMNGLAFKHEIKDSDNAELNCAVLQVNRLK 217 Query: 342 FGDC 353 C Sbjct: 218 SAQC 221
>RAD50_THEMA (Q9X1X1) Probable DNA double-strand break repair rad50 ATPase| Length = 852 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +3 Query: 309 FDAILQLVGVKFGDCYKPLDMIHPAEKNLVETLKQKAYENMKDVQYDHIMINN 467 F+ LV + D K L ++ + L E+LK+ EN++DV D+ + N Sbjct: 599 FEEFRILVKEEVKDAEKELGVVETEIRLLEESLKELESENVRDVSEDYEKVRN 651
>HAD_AGRTR (P60527) 2-haloalkanoic acid dehalogenase (EC 3.8.1.2)| (L-2-haloacid dehalogenase) (Halocarboxylic acid halidohydrolase) (L-DEX) (Cryptic L-isomer-specific dehalogenase) (DhlS5I) Length = 232 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -3 Query: 374 NHI*GLVTITKFHPNKLKYGIKEK-FHVAFLNFMHVKSIANFARHGMFYDGFPSCW*HLG 198 +H+ + + + P+ YG+ E+ F +A + + V S + G Y GFP+CW + G Sbjct: 139 DHLISVDPVRVYKPHDRAYGLAEEAFGLARTSILFVSS-NGWDATGARYFGFPTCWINRG 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,029,015 Number of Sequences: 219361 Number of extensions: 1269824 Number of successful extensions: 3669 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3669 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
