ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5i16 |
|---|---|
| Clone Library Name | barley_pub |
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 100 bits (250), Expect = 2e-21 Identities = 46/63 (73%), Positives = 50/63 (79%) Frame = +1 Query: 322 QLEGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 Q EGP GANLFIYH+PQEFGDQDL F FG V+SAKVF+DK T SKCFGFVSYD+P Sbjct: 394 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 453 Query: 502 PAQ 510 AQ Sbjct: 454 SAQ 456
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 100 bits (250), Expect = 2e-21 Identities = 46/63 (73%), Positives = 50/63 (79%) Frame = +1 Query: 322 QLEGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 Q EGP GANLFIYH+PQEFGDQDL F FG V+SAKVF+DK T SKCFGFVSYD+P Sbjct: 394 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 453 Query: 502 PAQ 510 AQ Sbjct: 454 SAQ 456
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 56.2 bits (134), Expect = 5e-08 Identities = 26/55 (47%), Positives = 35/55 (63%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL+I +P DQDL Q +G+++S K +DKAT K +GFV +DSPA AQ Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQ 117 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/50 (36%), Positives = 32/50 (64%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 NL+I ++P +Q+L + + FG+V+S +V D ++GAS+ GF +S Sbjct: 142 NLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMES 190
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 54.7 bits (130), Expect = 1e-07 Identities = 25/55 (45%), Positives = 34/55 (61%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL+I +P DQDL Q +G+++S K +DK T K +GFV +DSPA AQ Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQ 117 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 NL+I ++P +Q+L + + FG+V+S ++ D ++G S+ GF +S Sbjct: 142 NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMES 190
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 49.7 bits (117), Expect = 5e-06 Identities = 23/55 (41%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL+I + DQDL Q +G+++S K +DK T K +GFV +DSP+ AQ Sbjct: 57 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQ 111 Score = 33.5 bits (75), Expect = 0.34 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 NL+I ++P +Q+L + FG+V+S ++ D +G S+ GF +S Sbjct: 136 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMES 184
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 49.7 bits (117), Expect = 5e-06 Identities = 23/55 (41%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL+I + DQDL Q +G+++S K +DK T K +GFV +DSP+ AQ Sbjct: 59 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQ 113 Score = 35.0 bits (79), Expect = 0.12 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 NL+I ++P +Q+L + FG+V+S ++ D +GAS+ GF +S Sbjct: 138 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMES 186
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/56 (44%), Positives = 33/56 (58%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NLFI ++ E D+ L F +FG + SAK+ D+ G SK FGFV Y +P A Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEA 417 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 N+FI ++ ++ L F +FG++LS KV VD+ G +K +GFV +DS Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDS 217
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 47.0 bits (110), Expect = 3e-05 Identities = 16/56 (28%), Positives = 36/56 (64%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ +++ F +GR++++++ +D+ATG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 NL + ++PQ + F S G + S K+ DK TG S +GFV+Y P A Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 46.6 bits (109), Expect = 4e-05 Identities = 16/56 (28%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ +++ F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 NL + ++PQ + F S G + S K+ DK TG S +GFV+Y P A Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 46.6 bits (109), Expect = 4e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++ F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 46.6 bits (109), Expect = 4e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++ F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 46.6 bits (109), Expect = 4e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++ F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 46.2 bits (108), Expect = 5e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 42.4 bits (98), Expect = 7e-04 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL ++PQ ++L F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 46.2 bits (108), Expect = 5e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++L F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 46.2 bits (108), Expect = 5e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++L F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 46.2 bits (108), Expect = 5e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL++ +P+ ++L F +GR++++++ VD+ TG S+ GF+ +D A+ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++L F S G + S K+ DK TG S +GFV+Y P A+ Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 46.2 bits (108), Expect = 5e-05 Identities = 19/56 (33%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL+I +P+ +D+ F FGR+++++V VD+ TG S+ F+ +D + A+ Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAE 161 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ ++L F S G V SAK+ DK G S +GFV+Y + A+ Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 46.2 bits (108), Expect = 5e-05 Identities = 19/56 (33%), Positives = 35/56 (62%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ANL+I +P+ +D+ F FGR+++++V VD+ TG S+ F+ +D + A+ Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAE 161 Score = 42.4 bits (98), Expect = 7e-04 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ +L F S G V SAK+ DK G S +GFV+Y + A+ Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 19/74 (25%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFV-------------------DKATGAS 465 +NL++ HIP + D+DL ++SFG ++S KV D G+S Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 466 KCFGFVSYDSPAPA 507 + +GFVS++SP A Sbjct: 600 RGYGFVSFESPLDA 613 Score = 37.4 bits (85), Expect = 0.024 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 PG N+F+ I + +L+ F +G +LS K+ DK G +GF+SY Sbjct: 194 PG-NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/53 (37%), Positives = 35/53 (66%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 P N+++ ++P+E G+ +L F FG + SA V D+ +G S+CFGFV+++ Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFE 277 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = +1 Query: 322 QLEGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 + E GANL++ ++ D+ L F +G V S+KV ++ G S+ FGFV+Y +P Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383 Query: 502 PA 507 A Sbjct: 384 EA 385 Score = 42.4 bits (98), Expect = 7e-04 Identities = 22/55 (40%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ ++ L F SFG +LS KV +D TG SK +GFV ++ AQ Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQ 190
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/56 (41%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL+I ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEA 346 Score = 42.7 bits (99), Expect = 6e-04 Identities = 22/49 (44%), Positives = 29/49 (59%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 N++I + +E D+ L F FG+ LS KV D G SK FGFVSY+ Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYE 239 Score = 33.1 bits (74), Expect = 0.45 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L F +FG +LS KV D+ SK + FV +++ A Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAA 151
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/59 (35%), Positives = 32/59 (54%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PP LF+ + GD+DL F FG++LS +V D+ TG S + F+ Y+ A + Sbjct: 248 PPENVLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCE 306
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/55 (36%), Positives = 32/55 (58%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 P +++ +IP + D L F G+V+SA+V D+ +G S+ FGFV+ S A Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEA 243
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/48 (41%), Positives = 30/48 (62%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 ++F+ + E +D+ AF FGR+ A+V D ATG SK +GFVS+ Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G+NL++ ++ D+ L F +G V S KV ++ + G S+ FGFV+Y +P A Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEA 381 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ ++ L F SFG +LS KV +D G SK +GFV ++ AQ Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQ 186
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 42.7 bits (99), Expect = 6e-04 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL + ++PQ+ D++L F++ G + + ++ D TG S +GFV + S A A Sbjct: 77 GTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADA 132
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/55 (36%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ++F+ + E +D+ AF FG++ A+V D ATG SK +GFVS+ + A+ Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 42.7 bits (99), Expect = 6e-04 Identities = 23/53 (43%), Positives = 30/53 (56%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 LFI + D L AF FG V+ AKV VD+ TG S+ FGFV+++ A Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAA 89
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 42.7 bits (99), Expect = 6e-04 Identities = 22/55 (40%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N++I + ++ D+ L F +FG LS KV +D TG S+ FGFV+Y + AQ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQ 245 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/56 (37%), Positives = 29/56 (51%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D L F +G + SAKV + G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEA 346 Score = 33.9 bits (76), Expect = 0.26 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L F +FG +LS KV D+ S+ +GFV +++ A Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAA 151
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/55 (36%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 ++F+ + E +D+ AF FG++ A+V D ATG SK +GFVS+ + A+ Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 152
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 42.0 bits (97), Expect = 0.001 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 6/148 (4%) Frame = +1 Query: 85 GSSIRGVSSELSPNSVAR---SFNSMQLGSPYPAGPGMQYPGSY---PGGGINSRPYMNS 246 G + G+S L P+ ++R S S YP GP M G Y GGG M S Sbjct: 22 GGRMWGMSHSL-PSGMSRYAFSPEDTDFTSSYP-GPSMNRRGGYNDFSGGGGGGGGTMGS 79 Query: 247 HNSVKVXXXXXXXXXXXXXXXXXXXQLEGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVL 426 N++ G G NL + ++PQ+ D++L F++ G + Sbjct: 80 MNNM--VNAASTNSLNCGGGGGRDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPIN 137 Query: 427 SAKVFVDKATGASKCFGFVSYDSPAPAQ 510 + ++ D TG S + FV + + +Q Sbjct: 138 TCRIMRDYKTGYSFGYAFVDFAAETDSQ 165
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + ++ L F +FG +LS KV D+ SK +GFV +++ A+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + ++ L F +FG +LS KV D+ SK +GFV +++ A+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + ++ L F +FG +LS KV D+ SK +GFV +++ A+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + ++ L F +FG +LS KV D+ SK +GFV +++ A+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/55 (40%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + + L F SFG ++S KV VD ++G SK +GFV Y + AQ Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 ++F+ + + +D+ AF FGR+ A+V D ATG SK +GFVS+ Sbjct: 107 HVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PG L++ H+P+ + L F+ FG+VL +V K TG SK +GFV ++ Sbjct: 44 PGV-LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFE 94
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 41.6 bits (96), Expect = 0.001 Identities = 17/38 (44%), Positives = 27/38 (71%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 ++ L +AF S+G +L +KV D+ TG S+ FGFV++ S Sbjct: 21 NESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSS 58
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N++I + ++ D+ L F +FG LS KV +D + G S+ FGFV+Y + AQ Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQ 245 Score = 32.3 bits (72), Expect = 0.77 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ ++ L F +FG +LS KV D+ S+ +GFV +++ A Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAA 151
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 NL++ ++ D+ L AF FG + SAKV ++ G SK FGFV + SP A Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+F+ ++ + ++ L +FG +LS V D+ SK +GFV +++ A+ Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAE 152
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NLF+ + D+ L +AF+ F LS V D TG+S+ +GFVS+ S AQ Sbjct: 162 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 216
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + ++ L F +FG +LS KV D+ SK +GFV +++ A+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAP 504 LF+ I +E + DL F+ +G V+SA + VDK T + F FV +D P Sbjct: 110 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDP 161
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D L AF +G + SAKV D+ G SK FGFV +++ + A Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEA 340 Score = 37.4 bits (85), Expect = 0.024 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 A+L++ +PQ+ + L F S G VLS +V D T S + +V++ PA A+ Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAE 57 Score = 35.8 bits (81), Expect = 0.069 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ + F +FG +LS KV D+ G SK +GFV +++ A Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAA 143
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N+FI ++ + ++ L F +FG +LS KV D+ SK +GFV +++ A+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 N++I + ++ D+ L F +FG LS KV +D + G S+ FGFV+Y + AQ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQ 245 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/56 (37%), Positives = 29/56 (51%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NL++ ++ D L F +G + SAKV + G SK FGFV + SP A Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEA 346 Score = 33.5 bits (75), Expect = 0.34 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 N+FI ++ + ++ L F +FG +LS KV D+ S+ +GFV +++ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFET 147
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PP LF+ + D+DL F FG++LS +V DK TG S + F+ ++S Sbjct: 245 PPENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFES 298
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/116 (25%), Positives = 45/116 (38%) Frame = +1 Query: 163 SPYPAGPGMQYPGSYPGGGINSRPYMNSHNSVKVXXXXXXXXXXXXXXXXXXXQLEGPPG 342 S YP M + G GGG N S +G G Sbjct: 26 SSYPGPSAMNHRGGR-GGGYNDFSGGGSAMGSMCNMAPAISTNSVNSGGGDCGDNQGCNG 84 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 NL + ++PQ+ D++L F++ G + + ++ D TG S + FV + S AQ Sbjct: 85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQ 140
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 G +++ ++ D L F G+V+ A+V D+ +G SK FGFV+YDS Q Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/49 (40%), Positives = 27/49 (55%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 LF+ ++P LA F+S G V +V DK TG S+ FGFV+ S Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/38 (44%), Positives = 27/38 (71%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 ++ L AF +FG+V+ +KV D+ TG S+ FGFV++ S Sbjct: 21 NETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSS 58
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/51 (39%), Positives = 30/51 (58%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 +++ +IP D L F G+V+SA+V D+ TG S+ FGFV+ S A Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 40.8 bits (94), Expect = 0.002 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 24/154 (15%) Frame = +1 Query: 118 SPNSVARSFNSMQLGSPY---PAG-------PGMQYPG--SYPGGGINSRPYMNSHNSVK 261 +P+++A+ + S Q P PA P +Y G + PG +N P +H+ Sbjct: 17 APDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPGHTLNLYPPTQTHSEQS 76 Query: 262 VXXXXXXXXXXXXXXXXXX---XQLEGPPGAN---------LFIYHIPQEFGDQDLAHAF 405 Q + P N L + +IP F D DL F Sbjct: 77 ADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMF 136 Query: 406 QSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 FG++L ++ ++ SK FGFV++++ A A Sbjct: 137 GQFGKILDVEIIFNER--GSKGFGFVTFENSADA 168
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PP LF+ + D+DL F FG+++S +V DK TG S + F+ +D+ Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDN 294
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/53 (33%), Positives = 30/53 (56%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 P +++ ++P + L F G+V+SA+V D+ TG S+ FGFV+ S Sbjct: 147 PSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSS 199
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G NLF+ ++ D+ L F +G + SAKV + G SK FGFV + +P A Sbjct: 320 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEA 374 Score = 35.8 bits (81), Expect = 0.069 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 NL++ +I E D+ F FG ++SA + D A G K FGFV+Y+ Sbjct: 219 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYE 266
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/49 (40%), Positives = 29/49 (59%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 ++L + +P + +QDL F +FG VL +V D TG SK FGFV + Sbjct: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF 152
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 379 GDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 GD +L F FG V+ +K+ D+ TG S+ FGFV++ Sbjct: 18 GDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTF 54
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 40.0 bits (92), Expect = 0.004 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 25/155 (16%) Frame = +1 Query: 118 SPNSVARSFNSMQLGSPY---PAG-------PGMQYPG--SYPGGGINSRPYMNSHNSVK 261 +P+++A+ + S Q P PA P +Y G + P +N P +H+ Sbjct: 17 APDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQS 76 Query: 262 VXXXXXXXXXXXXXXXXXXXQLEGPPGAN-------------LFIYHIPQEFGDQDLAHA 402 +G P L + +IP F D DL Sbjct: 77 PADTSAQTVSGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136 Query: 403 FQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 F FG++L ++ ++ SK FGFV++++ A A Sbjct: 137 FGQFGKILDVEIIFNER--GSKGFGFVTFENSADA 169
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P LF+ ++P + + +L F SFG V+ ++ G FGFV +D P Q Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQ 386
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P LF+ ++P + + +L F SFG V+ ++ G FGFV +D P Q Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQ 386
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 39.7 bits (91), Expect = 0.005 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +F+ I + ++ F +G ++ A++ +DK TG S+ FGFV+YDS Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 293 Score = 37.4 bits (85), Expect = 0.024 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 +FI + + + +L F +G V K+ D ATG S+ FGF+S++ P+ Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 211
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/53 (39%), Positives = 29/53 (54%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 LFI ++P ++ F+SFG V + +DK T ASK FVS+ PA A Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHA 368
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PP LF+ + D+DL F FG++LS +V DK +G S + F+ +D A+ Sbjct: 243 PPENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAE 301
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/49 (40%), Positives = 29/49 (59%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 ++L + +P + +QDL F +FG VL +V D TG SK FGFV + Sbjct: 104 SDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF 152
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 39.3 bits (90), Expect = 0.006 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAP 504 LF+ + + +Q + FQ FG ++ + +DK TG + F FV +D P Sbjct: 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDP 175
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PP LF+ + DL F FG++LS +V DK TG S + F+ +D A+ Sbjct: 259 PPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAE 317
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 38.9 bits (89), Expect = 0.008 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 G NL + ++PQ+ D++L F++ G + + ++ D TG S + FV + S AQ Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQ 157
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/58 (34%), Positives = 29/58 (50%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P LF+ ++ LA F+S G V +V DK TG S+ FGFV+ + A + Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154 Score = 37.4 bits (85), Expect = 0.024 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 G L++ ++ D L + F G+V+ A+V D+ +G SK FGFV+ S Q Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PPG ++I ++ + D+ L F SFG + AKV ++ G K FG V + S Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSS 350 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L + F +FG +LS KV D SK + +V +DS A A Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAA 158
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PPG ++I ++ + D+ L F SFG + AKV ++ G K FG V + S Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSS 350 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L + F +FG +LS KV D SK + +V +DS A A Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAA 158
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PPG ++I ++ + D+ L F SFG + AKV ++ G K FG V + S Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSS 350 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L + F +FG +LS KV D SK + +V +DS A A Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAA 158
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PPG ++I ++ + D+ L F SFG + AKV ++ G K FG V + S Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSS 350 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L + F +FG +LS KV D SK + +V +DS A A Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAA 158
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PPG ++I ++ + D+ L F SFG + AKV ++ G K FG V + S Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSS 350 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L + F +FG +LS KV D SK + +V +DS A A Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAA 158
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PPG ++I ++ + D+ L F SFG + AKV ++ G K FG V + S Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSS 350 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 N+FI ++ + ++ L + F +FG +LS KV D SK + +V +DS A A Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAA 158
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 38.5 bits (88), Expect = 0.011 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +1 Query: 355 IYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 + ++PQE + +L F GRV+ + DK TG K F FV+++S Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PG LFI + E ++ L F +GR++ + D+ T S+ F FV+++SPA A+ Sbjct: 7 PG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 38.1 bits (87), Expect = 0.014 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PP LF+ + D+DL F FG +LS +V DK TG S + F+ +++ Sbjct: 245 PPENVLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFEN 298
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 38.1 bits (87), Expect = 0.014 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 D+DL F FG V+ +K+ D+ +G S+ FGFV++ Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 38.1 bits (87), Expect = 0.014 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PG LFI + E ++ L F +GR++ + D+ T S+ F FV+++SPA A+ Sbjct: 7 PG-KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 38.1 bits (87), Expect = 0.014 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 L + +IP F D DL F FG++L ++ ++ SK FGFV++++ A A Sbjct: 123 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADA 173
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 38.1 bits (87), Expect = 0.014 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PP LF+ + D+DL F FG +LS +V DK TG S + F+ +++ Sbjct: 245 PPENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFEN 298
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 37.7 bits (86), Expect = 0.018 Identities = 18/54 (33%), Positives = 33/54 (61%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LF+ + ++ ++ L +F+ +SA++ D+ TG+SK FGFV + SP A+ Sbjct: 555 LFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAK 605
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 37.7 bits (86), Expect = 0.018 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 GANLF+ ++ ++ L F + G+++ A G SK +GFVSYDS Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 37.7 bits (86), Expect = 0.018 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PP LF+ + D+DL F FG++LS +V D+ TG S + F+ ++ Sbjct: 250 PPENVLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFE 302
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 37.4 bits (85), Expect = 0.024 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +1 Query: 364 IPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 IP+ + ++DL F+ +G + V +K TG SK G+V Y P+ A Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQA 174
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 37.4 bits (85), Expect = 0.024 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVS 486 P +++ ++P + + L F G+V+ A+V D+ TG S+ FGFV+ Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 37.4 bits (85), Expect = 0.024 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P LFI ++P E +L FQ+FG V+ ++ + G FGFV +D P Q Sbjct: 335 PDSHQLFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFVVFDDSEPVQ 390
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 37.4 bits (85), Expect = 0.024 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P LFI ++P E +L FQS+G V+ ++ + G FGFV +D P Q Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVFDDSEPVQ 392
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 37.4 bits (85), Expect = 0.024 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PP LF+ + D+DL F FG + S +V D TG S C+ F+ ++ Sbjct: 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFE 289
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 37.4 bits (85), Expect = 0.024 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PP LF+ + D+DL F FG + S +V D TG S C+ F+ ++ Sbjct: 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFE 289
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 37.4 bits (85), Expect = 0.024 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 D+ L AF FG + +K+ D+ TG S+ FGFV++ Sbjct: 19 DESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTF 54
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 37.0 bits (84), Expect = 0.031 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 364 IPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 IP+ + ++DL F+ +G + + +K TG SK G+V Y P+ A Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQA 174
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 37.0 bits (84), Expect = 0.031 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 364 IPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 IP+ + ++DL F+ +G + + +K TG SK G+V Y P+ A Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQA 174
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 37.0 bits (84), Expect = 0.031 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +1 Query: 385 QDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +D+ H F+ FG+V A + DK T + FGFV+++S Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 37.0 bits (84), Expect = 0.031 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +1 Query: 385 QDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +D+ H F+ FG+V A + DK T + FGFV+++S Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 37.0 bits (84), Expect = 0.031 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 LF+ + ++ L F FG V+S K+ DK TG + F FV +D Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFD 172 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + +++L + +G+V+ V D AT S+ FGF++Y Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY 80
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 36.6 bits (83), Expect = 0.041 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 331 GPPGAN-LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 GP G L + +IP F D DL F+ FG V ++ ++ SK FGFV+ + P A Sbjct: 148 GPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNER--GSKGFGFVTMERPQDA 205 Query: 508 Q 510 + Sbjct: 206 E 206
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 36.6 bits (83), Expect = 0.041 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 ++F+ +IP E ++ L F G V+S ++ D+ TG K +GF Y A Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 36.6 bits (83), Expect = 0.041 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQS-FGRVLSAKVFVDKATGASKCFGFVSY 489 P +LF+ + + DL FQ+ F V + +V D TG+S+CFGFV + Sbjct: 190 PEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRF 241
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 36.6 bits (83), Expect = 0.041 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 ++F+ +IP E ++ L F G V+S ++ D+ TG K +GF Y A Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 36.6 bits (83), Expect = 0.041 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Frame = +1 Query: 322 QLEGP---------PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCF 474 +L+GP P LF+ + ++ ++ L +F+ R A++ D+ TG+SK F Sbjct: 558 ELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVR---ARIVTDRETGSSKGF 614 Query: 475 GFVSYDSPAPAQ 510 GFV ++S A+ Sbjct: 615 GFVDFNSEEDAK 626
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 36.6 bits (83), Expect = 0.041 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Frame = +1 Query: 322 QLEGP---------PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCF 474 +L+GP P LF+ + ++ ++ L +F+ R A++ D+ TG+SK F Sbjct: 555 ELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVR---ARIVTDRETGSSKGF 611 Query: 475 GFVSYDSPAPAQ 510 GFV ++S A+ Sbjct: 612 GFVDFNSEEDAK 623
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 36.6 bits (83), Expect = 0.041 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 + LF+ ++P + + DL F FG++ V D + SK F +V Y P A Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAA 355
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 +F+ +P D L F+ FG + A V D+ TG S+ +GFV+ A A+ Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 36.2 bits (82), Expect = 0.053 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 ++F+ +IP E ++ L F G V+S ++ D+ TG K +GF Y A Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 36.2 bits (82), Expect = 0.053 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PG LFI + E ++ L F +GR++ + D+ T S+ F FV+ +SPA A+ Sbjct: 7 PG-KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAK 63
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 36.2 bits (82), Expect = 0.053 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 ++F+ +IP E ++ L F G V+S ++ D+ TG K +GF Y A Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVL-SAKVFVDKATGASKCFGFVSYDS 495 GAN+FI ++ E ++ L F +FG +L + K+ D TG SK + F+++ S Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 36.2 bits (82), Expect = 0.053 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAP 504 LF+ + + ++ L F+ FG+++S + DK TG + F F+ +D P Sbjct: 117 LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDP 168
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 36.2 bits (82), Expect = 0.053 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 ++F+ +IP E ++ L F G V+S ++ D+ TG K +GF Y A Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 36.2 bits (82), Expect = 0.053 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 ++F+ +IP E ++ L F G V+S ++ D+ TG K +GF Y A Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 36.2 bits (82), Expect = 0.053 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P LF+ + ++ ++ L +F+ R A++ D+ TG+SK FGFV ++S A+ Sbjct: 566 PSKTLFVKGLSEDTTEETLKESFEGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAK 620
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 36.2 bits (82), Expect = 0.053 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Frame = +1 Query: 337 PGAN-----LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PGA+ LF+ + + + DL F FG V A++ DK +G + FGFV + + Sbjct: 91 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQN 148 Score = 35.4 bits (80), Expect = 0.090 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +1 Query: 325 LEGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +E LFI + + + L F++FG + V V+ T S+CFGFV+Y + Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 57
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 35.8 bits (81), Expect = 0.069 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +1 Query: 382 DQD-LAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 DQD L F G+V+ AKV D+ +G S+ FGFV+Y S Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 244
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 35.8 bits (81), Expect = 0.069 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 ++F+ ++P + ++ LA F FG V A +DK+TG +K FV++ Sbjct: 291 SVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338 Score = 33.5 bits (75), Expect = 0.34 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LF+ IPQ+ D+ LA F +F + A V V S+ FGFVS+ Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHA-VVVKDTNKRSRGFGFVSF 73
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 35.8 bits (81), Expect = 0.069 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Frame = +1 Query: 322 QLEGP---------PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCF 474 +L+GP P LF+ + ++ ++ L +F R A++ D+ TG+SK F Sbjct: 556 ELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF 612 Query: 475 GFVSYDSPAPAQ 510 GFV ++S A+ Sbjct: 613 GFVDFNSEEDAK 624
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 35.8 bits (81), Expect = 0.069 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +1 Query: 382 DQD-LAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 DQD L F G+V+ AKV D+ +G S+ FGFV+Y S Sbjct: 200 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 35.8 bits (81), Expect = 0.069 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Frame = +1 Query: 322 QLEGP---------PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCF 474 +L+GP P LF+ + ++ ++ L +F R A++ D+ TG+SK F Sbjct: 557 ELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF 613 Query: 475 GFVSYDSPAPAQ 510 GFV ++S A+ Sbjct: 614 GFVDFNSEEDAK 625
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 35.8 bits (81), Expect = 0.069 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVS 486 G NL++ + DL + F +G+V+ AKV + + ++C+GFV+ Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVT 454
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 35.8 bits (81), Expect = 0.069 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Frame = +1 Query: 322 QLEGP---------PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCF 474 +L+GP P LF+ + ++ ++ L +F R A++ D+ TG+SK F Sbjct: 555 ELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF 611 Query: 475 GFVSYDSPAPAQ 510 GFV ++S A+ Sbjct: 612 GFVDFNSEEDAK 623
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 35.8 bits (81), Expect = 0.069 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 +F+ +P D L F+ FG + A V D+ TG S+ +GFV+ A A Sbjct: 34 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 86
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 35.4 bits (80), Expect = 0.090 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSA-KVFVDKATGASKCFGFVSYDS 495 GAN+F+ ++ E ++ L F +FG +L K+ D +G SK F F+++ S Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFAS 151
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 35.4 bits (80), Expect = 0.090 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 G +LF+ I + +L F FG V ++ + T AS+ FGF+S+ + Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 35.4 bits (80), Expect = 0.090 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 ++ L AF FG ++ +K+ D+ TG S+ FGFV++ Sbjct: 21 ERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTF 56
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 328 EGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVS 486 +G L++ +IP+ + +L + G + A+V DK +G S+ FGFV+ Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVT 131 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 ++I ++ + ++ L F G+VL AKV T S FGFVS+ S Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSS 234
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 35.0 bits (79), Expect = 0.12 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 G +F+ +IP + +Q + F G V + K+ +D TG+ K +GF + Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 35.0 bits (79), Expect = 0.12 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PG ++I HIP+ + L F FG V ++ K TG SK + +V Y+ Sbjct: 40 PGV-IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYE 90
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 34.7 bits (78), Expect = 0.15 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 L++ + ++ + L F +G V +++ +DKAT + FGFV++D Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 D L F G V+ AKV D+ +G S+ FGFV+Y S Sbjct: 221 DLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 258
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +1 Query: 382 DQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 D L F G V+ AKV D+ +G S+ FGFV+Y S Sbjct: 220 DLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 257
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 34.7 bits (78), Expect = 0.15 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G N ++ + DL + F +G+V+ AKV + + ++C+GFV+ + A Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEA 460
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 34.3 bits (77), Expect = 0.20 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 L++ ++ Q L AF +SAKV D+++G S+ FGF+++ S Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSS 267
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVS 486 G NL++ + DL F G+V+ AKV + + ++C+GFV+ Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVT 498
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 G N ++ + DL + F +G+V+ AKV + + ++C+GFV+ + A Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEA 482
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 34.3 bits (77), Expect = 0.20 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQS-FGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P ++F+ + D DL F+S + SAK+ VD TG S+ +GFV + S Q Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQ 238
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 33.9 bits (76), Expect = 0.26 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSP 498 P +FI +P + + +L F FG + ++ DK T SK + F+ + P Sbjct: 105 PYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 33.9 bits (76), Expect = 0.26 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +1 Query: 385 QDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +D+ F+ FG+V A + DK T + FGFV+++S Sbjct: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LF+ + ++ ++ L AF ++A++ D+ TGASK FGFV + + A+ Sbjct: 504 LFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAK 554
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 LFI + E + L AF +GR+ V D+ T S+ FGFV++++ Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFEN 55
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PG ++I HIP+ + L F FG V ++ K TG SK + +V ++ Sbjct: 40 PGV-IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFE 90
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 328 EGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 E A L + ++ + +++L F+ FG + + DK TG +K F FVSY Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 33.1 bits (74), Expect = 0.45 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +1 Query: 385 QDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +D+ F+ FG+V A + DK T + FGFV++++ Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 160 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 PG +FI + + L F FG + V D T S+ FGFV++ PA Sbjct: 20 PG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 33.1 bits (74), Expect = 0.45 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +1 Query: 385 QDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +D+ F+ FG+V A + DK T + FGFV++++ Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 160 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 PG +FI + + L F FG + V D T S+ FGFV++ PA Sbjct: 20 PG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 33.1 bits (74), Expect = 0.45 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 13/68 (19%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDK-------------ATGASKCFGFVS 486 NL + ++PQ + ++ F S G + S K+ DK + G S +GFV+ Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209 Query: 487 YDSPAPAQ 510 Y P A+ Sbjct: 210 YVRPQDAE 217
>YQO1_CAEEL (Q09293) Putative RNA-binding protein EEED8.1| Length = 367 Score = 33.1 bits (74), Expect = 0.45 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 A I +IP+ + D +L H FQ+FG+V +V V ++ GFV+ S A A Sbjct: 13 AGFHIRNIPKAWNDWNLFHVFQNFGKVSYCRV-VGQSNDGQVQLGFVNMMSVADA 66
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 33.1 bits (74), Expect = 0.45 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 +F+ + + +DL F FG V+ + +D TG S+ FGF+ + A + Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 123
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 33.1 bits (74), Expect = 0.45 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 13/68 (19%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDK-------------ATGASKCFGFVS 486 NL + ++PQ + ++ F S G + S K+ DK + G S +GFV+ Sbjct: 186 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 245 Query: 487 YDSPAPAQ 510 Y P A+ Sbjct: 246 YVRPQDAE 253
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 32.7 bits (73), Expect = 0.59 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = +1 Query: 403 FQSFGRVLSAKVFVDKATGASKCFGFVSY 489 F+ FGR+ S ++ +D TG SK +GF+++ Sbjct: 270 FEPFGRIESIQLMMDSETGRSKGYGFITF 298
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 32.7 bits (73), Expect = 0.59 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = +1 Query: 403 FQSFGRVLSAKVFVDKATGASKCFGFVSY 489 F+ FGR+ S ++ +D TG SK +GF+++ Sbjct: 270 FEPFGRIESIQLMMDSETGRSKGYGFITF 298
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 32.7 bits (73), Expect = 0.59 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Frame = +1 Query: 16 MQYPLSPMQNQAGFQNMVQPVNQGSSIRGVSSEL---SPNSVARSFNSMQLGSPYPAGPG 186 MQYP +P AG + +P+ QGS G + L P + N GSPY PG Sbjct: 205 MQYP-NPGMGSAG-NLLTEPLQQGSPQMGGQTGLRGPQPLKMGMMNNPNPYGSPYTQNPG 262 Query: 187 MQYPGSYPGGGINSRPYMNSHNS 255 Q S G I ++ ++++ S Sbjct: 263 QQIGASGLGLQIQTKTVLSNNLS 285
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 32.7 bits (73), Expect = 0.59 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = +1 Query: 340 GANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 G +F+ +P + DL F +G+V + D+ S+ FGF+S++ + + Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 32.7 bits (73), Expect = 0.59 Identities = 12/52 (23%), Positives = 29/52 (55%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPA 501 ++F+ +I + + + F+ G++ + D+ TG K +G++ ++SPA Sbjct: 65 SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPA 116
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 32.7 bits (73), Expect = 0.59 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +1 Query: 337 PGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 PG +++ H+P + + F FG V ++ K TG SK + FV ++S Sbjct: 44 PGV-VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFES 95
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 32.3 bits (72), Expect = 0.77 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +1 Query: 346 NLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 N+F+ ++P+ + L F+ FG ++S KV G S+ +GFV ++ Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKV-ATLEDGKSRGYGFVQFE 160
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 32.3 bits (72), Expect = 0.77 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 LF+ + +Q L F SFG + V D+ T S+ FGF+++ +P A Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 32.3 bits (72), Expect = 0.77 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +1 Query: 328 EGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGA---SKCFGFVSYDSP 498 E PG LFI ++ + ++ L F G V S + K S FGFV Y P Sbjct: 725 ESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKP 784 Query: 499 APAQ 510 AQ Sbjct: 785 EQAQ 788 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 LF+ ++P ++DL F +G + +D T K F F+++ P A Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 32.3 bits (72), Expect = 0.77 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 343 ANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 A LF+ ++ E + +L F FG++ V D SK F +V Y P A Sbjct: 295 ARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAA 349
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 32.3 bits (72), Expect = 0.77 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +++ +P F +++L+ F FG + ++ +K TG S+ +GF+ + Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEF 139
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 32.3 bits (72), Expect = 0.77 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPA 507 LF+ + +Q L F SFG + V D+ T S+ FGF+++ +P A Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI +P D + SFG + + + D ATG SK + F Y Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI +P D + SFG + + + D ATG SK + F Y Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +FI +P D + SFG++ + + D ATG SK + F Y Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 32.0 bits (71), Expect = 1.0 Identities = 14/59 (23%), Positives = 29/59 (49%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PP +LF+ ++ + +DL F +G ++ V +D T + F +V ++ A+ Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 32.0 bits (71), Expect = 1.0 Identities = 14/59 (23%), Positives = 29/59 (49%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PP +LF+ ++ + +DL F +G ++ V +D T + F +V ++ A+ Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 32.0 bits (71), Expect = 1.0 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +F+ + + +DL F FG V+ + +D TG S+ FGF+ + Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +FI + + +DL F FG V+ + +D TG S+ FGFV + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +FI + + +DL F FG V+ + +D TG S+ FGFV + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 32.0 bits (71), Expect = 1.0 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P G+ +FI +PQ+ + L FQ GR+ ++ + +G ++ F + Y S AQ Sbjct: 55 PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1082 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +1 Query: 49 AGFQNMVQPVNQGSSIRGVSSELSPNSVARSFNSMQLGSPYPAGPGMQYPGSYPGGGI-- 222 AG+QN P + + ++ + SP+ ++ M G+P P G Y PG GI Sbjct: 913 AGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG----YNPHTPGSGIEQ 968 Query: 223 NSRPYMNSHNSVKV 264 NS ++ + VKV Sbjct: 969 NSSDWVTTDIQVKV 982
>PAQR3_MOUSE (Q6TCG8) Progestin and adipoQ receptor family member 3 (Progestin| and adipoQ receptor family member III) Length = 311 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 144 QFNAVGQPLSSWAWYAVSWVISWWWHQ*SSLHEFS*FR*SS*CKCYISHI 293 Q N +G S W+ ++ V+ +WWHQ S+++ +R S C Y+SH+ Sbjct: 266 QLNYLGS--SHQIWHVLAVVMLYWWHQ-STVYVMQ-YRHSKPCPDYVSHL 311
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +F+ + E D+++ F FG ++ ++ DK K F F+++DS Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/53 (24%), Positives = 24/53 (45%) Frame = +1 Query: 331 GPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 G P LF+ + E + + F+S+G + + D+ T K + F+ Y Sbjct: 134 GDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D L F+ +G++ V D T S+ FGFV+Y Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Frame = +1 Query: 337 PGANL-----FIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 PGA+L F+ I ++ + L +S+G++ + +V D+ +G + F FV++D Sbjct: 111 PGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFD 167
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D L F+ +G++ V D T S+ FGFV+Y Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75
>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1083 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +1 Query: 49 AGFQNMVQPVNQGSSIRGVSSELSPNSVARSFNSMQLGSPYPAGPGMQYPGSYPGGGI-- 222 AG+QN P + + ++ + SP+ ++ M G+P P G Y PG GI Sbjct: 915 AGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG----YNPHTPGSGIEQ 970 Query: 223 NSRPYMNSHNSVKV 264 NS ++ + VKV Sbjct: 971 NSSDWVTTDIQVKV 984
>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (DSIF p160) (Tat-cotransactivator 1 protein) (Tat-CT1 protein) Length = 1087 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +1 Query: 49 AGFQNMVQPVNQGSSIRGVSSELSPNSVARSFNSMQLGSPYPAGPGMQYPGSYPGGGI-- 222 AG+QN P + + ++ + SP+ ++ M G+P P G Y PG GI Sbjct: 919 AGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG----YNPHTPGSGIEQ 974 Query: 223 NSRPYMNSHNSVKV 264 NS ++ + VKV Sbjct: 975 NSSDWVTTDIQVKV 988
>PAQR3_HUMAN (Q6TCH7) Progestin and adipoQ receptor family member 3 (Progestin| and adipoQ receptor family member III) Length = 311 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 144 QFNAVGQPLSSWAWYAVSWVISWWWHQ*SSLHEFS*FR*SS*CKCYISHI 293 Q N +G S W+ ++ V+ +WWHQ S+++ +R S C Y+SH+ Sbjct: 266 QLNYLGS--SHQIWHILAVVMLYWWHQ-STVYVMQ-YRHSKPCPDYVSHL 311
>SGPP1_HUMAN (Q9BX95) Sphingosine-1-phosphate phosphatase 1 (EC 3.1.3.-)| (Sphingosine-1-phosphatase 1) (SPPase1) (Spp1) (hSPPase1) Length = 441 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = -3 Query: 215 PPGYDPGYCIPGPAG*GLPNCIELNDLATELGDSS 111 PPG D C P G G PN + N LA ELG +S Sbjct: 68 PPGSDRNQCPAKPDGGGAPNGVR-NGLAAELGPAS 101
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +FI + + +DL F FG V+ + +D TG S+ FGFV + Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF 143
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 P G+ ++I +PQ+ + L FQ GR+ ++ + +G ++ F + Y S AQ Sbjct: 55 PSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112
>GDF6_HUMAN (Q6KF10) Growth/differentiation factor 6 precursor (GDF-6)| (Growth/differentiation factor 16) Length = 455 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Frame = +1 Query: 19 QYPLSPMQNQAGFQNMVQPVNQGSSIRGVSSELSPNSVARSFNSMQLGSPYPAGPGMQYP 198 Q P P GF V+P + + + + N A QLGS AGPG Sbjct: 253 QQPPPPDLRSLGFGRRVRPPQERALLVVFTRSQRKNLFAEMRE--QLGSAEAAGPGAGAE 310 Query: 199 GSY--PGGGINSRPYMNS 246 GS+ P G ++RP++ S Sbjct: 311 GSWPPPSGAPDARPWLPS 328
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D L F+ +G + V D T S+ FGFV+Y Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D L F+ +G + V D T S+ FGFV+Y Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D+ L F+ +G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D+ L F+ +G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D+ L F+ +G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 +F+ IP G+ +L F+ FG V + D + FGF++++ Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYD 492 +F+ IP G+ +L F+ FG V + D + FGF++++ Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 30.4 bits (67), Expect = 2.9 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Frame = +1 Query: 328 EGPPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGA---SKCFGFVSYDSP 498 E PG LFI ++ ++ L F G + S + K S FGFV Y P Sbjct: 717 ESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 776 Query: 499 APAQ 510 AQ Sbjct: 777 EQAQ 780
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D+ L F+ +G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D L F+ +G + V D T S+ FGFV+Y Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 30.4 bits (67), Expect = 2.9 Identities = 14/59 (23%), Positives = 28/59 (47%) Frame = +1 Query: 334 PPGANLFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 PP +LFI ++ +DL F +G ++ + +D T + F +V ++ A+ Sbjct: 7 PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAE 65
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D+ L F+ +G + V D T S+ FGFV+Y Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61
>CMTA1_HUMAN (Q9Y6Y1) Calmodulin-binding transcription activator 1| Length = 1673 Score = 30.0 bits (66), Expect = 3.8 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +1 Query: 88 SSIRGVSSELSPNSVARSFNSMQLGSPYPAGPGMQYPGSYPGGGINSRPYMNSHNSVKV 264 SS + V LSP+ R F S +L P P Q GS P G NS+ ++V+V Sbjct: 1278 SSKQSVPETLSPSEGVRDF-SRELSPPTPETAAFQASGSQPVGKWNSKDLYIGVSTVQV 1335
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 30.0 bits (66), Expect = 3.8 Identities = 11/47 (23%), Positives = 25/47 (53%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 +++ I + ++D+ F++FG +L K+ + K +GF+ Y Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEY 275
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21| Length = 1447 Score = 30.0 bits (66), Expect = 3.8 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Frame = +1 Query: 19 QYPLSPMQNQAGFQNMVQPVNQGSSIRGVSSELSPNSVARSFNSMQLGSPYPAGPGMQYP 198 Q P P Q Q F Q V QGS+ S L+ +V + N+ + + AG GMQ P Sbjct: 1209 QLPQQPQQAQQQFHAQPQFVPQGSN----SPNLNMPTVNGTPNNPAMIAALQAGGGMQSP 1264 Query: 199 ---GSYPGGGINSRPYMNSHNSV 258 S P G P M N++ Sbjct: 1265 PFHNSAPQGVSTPSPRMGQPNTL 1287
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDSPAPAQ 510 LFI ++P+E +Q++ F+ +G+VL + K +GFV + A+ Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAE 49
>ANX11_HUMAN (P50995) Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50)| (CAP-50) (56 kDa autoantigen) Length = 505 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Frame = +1 Query: 7 YGLMQYPLSPMQNQAGFQNMVQPVNQGSS--IRGVSSELSPNSVARSFNSMQLGSPYPAG 180 +G YP P G N+ Q + + G+++ +S +F + + YP Sbjct: 23 WGGAAYPPPPSMPPIGLDNVATYAGQFNQDYLSGMAANMSG-----TFGGANMPNLYPGA 77 Query: 181 PGMQYPGSYPGG 216 PG YP PGG Sbjct: 78 PGAGYPPVPPGG 89
>GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry proximal)| (BSH4) Length = 449 Score = 29.3 bits (64), Expect = 6.5 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Frame = +1 Query: 40 QNQAGFQNMVQPVNQGSSIRGVSSELSPNSVARSFNSMQLGS--PYPAGPGMQYPGSYPG 213 ++ G + + P+N GSS GV LS + + + +GS Y PG G+ Sbjct: 239 KHSGGSNSGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMN 298 Query: 214 GGINSRPYMNS--HNSVKVXXXXXXXXXXXXXXXXXXXQLEGPPGANLFIYHIPQEFGDQ 387 G++ + S H++ G PG + P FG Q Sbjct: 299 DGVHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGG----FAQPGHFGSQ 354 Query: 388 DLAH 399 + H Sbjct: 355 NYYH 358
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LF+ +I ++D F FG + V +D TG SK F +V + Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLF 393
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 29.3 bits (64), Expect = 6.5 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSY 489 LFI + E D+ L F+ +G + V D + S+ FGFV+Y Sbjct: 16 LFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 28.9 bits (63), Expect = 8.5 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = +1 Query: 349 LFIYHIPQEFGDQDLAHAFQSFGRVLSAKVFVDKATGASKCFGFVSYDS 495 +++ H+P + + + FG + ++ K TG SK + FV ++S Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFES 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,710,047 Number of Sequences: 219361 Number of extensions: 1540513 Number of successful extensions: 3376 Number of sequences better than 10.0: 209 Number of HSP's better than 10.0 without gapping: 3119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3369 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
