ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 436 e-119
2dbj|AK073553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 422 e-115
3ref|XM_475151.1| Oryza sativa (japonica cultivar-group), predic... 309 5e-81
4gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 252 1e-63
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
6gb|AY104506.1| Zea mays PCO080326 mRNA sequence 159 1e-35
7ref|NM_190082.1| Oryza sativa (japonica cultivar-group), predic... 139 1e-29
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
9dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
10dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
11dbj|AK099501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
12ref|NM_116545.2| Arabidopsis thaliana RNA binding / nucleic acid... 64 5e-07
13gb|AY084669.1| Arabidopsis thaliana clone 114653 mRNA, complete ... 64 5e-07
14gb|AY021985.1| Oryza sativa microsatellite MRG4310 containing (T... 56 1e-04
15ref|NM_178963.1| Arabidopsis thaliana RNA binding / nucleic acid... 50 0.007
16gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, nea... 50 0.007
17gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV... 50 0.007
18emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c... 50 0.007
19gb|AY065261.1| Arabidopsis thaliana putative ribonucleoprotein (... 50 0.007
20gb|AY107712.1| Zea mays PCO079656 mRNA sequence 48 0.028
21gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 44 0.44
22gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequ... 44 0.44
23gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome... 42 1.7
24dbj|AB248638.1| Uncultured bacterium gene for 16S rRNA, partial ... 42 1.7
25gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosom... 42 1.7
26emb|CT573421.5| M.truncatula DNA sequence from clone MTH2-27B10 ... 42 1.7
27ref|XM_501542.1| Yarrowia lipolytica CLIB122, YALI0C07040g predi... 40 6.9
28gb|AC159196.2| Mus musculus BAC clone RP23-430O17 from chromosom... 40 6.9
29emb|AL596168.1| Listeria innocua Clip11262 complete genome, segm... 40 6.9
30dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 6.9
31gb|AC154639.2| Mus musculus BAC clone RP23-306D9 from chromosome... 40 6.9
32emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 6.9

>dbj|AK073796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067B10, full
            insert sequence
          Length = 1739

 Score =  436 bits (220), Expect = e-119
 Identities = 433/504 (85%)
 Strand = Plus / Plus

                                                                        
Query: 3    aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62
            |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct: 890  aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 949

                                                                        
Query: 63   tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122
            |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || ||
Sbjct: 950  tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 1009

                                                                        
Query: 123  taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182
            |||||| | | |||| || || || ||||||||||| ||||| |||||| |  ||| |||
Sbjct: 1010 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 1069

                                                                        
Query: 183  tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242
            | ||||||||||||| || ||||||||||||  ||  ||||||||||||||||   ||||
Sbjct: 1070 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 1129

                                                                        
Query: 243  ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302
            |||||| |||||  | |||||||| ||||| |||||||  |||||||| |||||||||||
Sbjct: 1130 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 1189

                                                                        
Query: 303  cggcagcaacactggtcctcagctagagggtcctcctggagccaacttgtttatctatca 362
              |||||||| | ||||||||| |||||||||||||||||||||| || |||||||| ||
Sbjct: 1190 tagcagcaaccccggtcctcagatagagggtcctcctggagccaatttatttatctacca 1249

                                                                        
Query: 363  catcccgcaagaattcggcgaccaagatctagcacatgcatttcagagttttggtagagt 422
            |||||| |||||||| |||||||||||||| ||   ||| |||||| |||||||||||||
Sbjct: 1250 catccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggtagagt 1309

                                                                        
Query: 423  attgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttgt 482
            | ||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||| |
Sbjct: 1310 actgagtgctaaagtttttgtagacaaagcaactggtcttagtaaatgcttcggttttat 1369

                                    
Query: 483  aagctacgattcacctgctcctgc 506
            |||||| ||||| |||||| ||||
Sbjct: 1370 aagctatgattctcctgcttctgc 1393



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>dbj|AK073553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045O20, full
            insert sequence
          Length = 2722

 Score =  422 bits (213), Expect = e-115
 Identities = 433/505 (85%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                        
Query: 3    aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62
            |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct: 1910 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 1969

                                                                        
Query: 63   tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122
            |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || ||
Sbjct: 1970 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 2029

                                                                        
Query: 123  taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182
            |||||| | | |||| || || || ||||||||||| ||||| |||||| |  ||| |||
Sbjct: 2030 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 2089

                                                                        
Query: 183  tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242
            | ||||||||||||| || ||||||||||||  ||  ||||||||||||||||   ||||
Sbjct: 2090 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 2149

                                                                        
Query: 243  ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302
            |||||| |||||  | |||||||| ||||| |||||||  |||||||| |||||||||||
Sbjct: 2150 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 2209

                                                                        
Query: 303  cggcagcaacactggtcctcagctaga-gggtcctcctggagccaacttgtttatctatc 361
              |||||||| | ||||||||| |||| |||||||||||||||||| || |||||||| |
Sbjct: 2210 tagcagcaaccccggtcctcagatagaggggtcctcctggagccaatttatttatctacc 2269

                                                                        
Query: 362  acatcccgcaagaattcggcgaccaagatctagcacatgcatttcagagttttggtagag 421
            ||||||| |||||||| |||||||||||||| ||   ||| |||||| ||||||||||||
Sbjct: 2270 acatccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggtagag 2329

                                                                        
Query: 422  tattgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttg 481
            || ||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||| 
Sbjct: 2330 tactgagtgctaaagtttttgtagacaaagcaactggtcttagtaaatgcttcggtttta 2389

                                     
Query: 482  taagctacgattcacctgctcctgc 506
            ||||||| ||||| |||||| ||||
Sbjct: 2390 taagctatgattctcctgcttctgc 2414



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>ref|XM_475151.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score =  309 bits (156), Expect = 5e-81
 Identities = 355/421 (84%), Gaps = 4/421 (0%)
 Strand = Plus / Plus

                                                                        
Query: 3    aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62
            |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct: 726  aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 785

                                                                        
Query: 63   tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122
            |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || ||
Sbjct: 786  tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 845

                                                                        
Query: 123  taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182
            |||||| | | |||| || || || ||||||||||| ||||| |||||| |  ||| |||
Sbjct: 846  taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 905

                                                                        
Query: 183  tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242
            | ||||||||||||| || ||||||||||||  ||  ||||||||||||||||   ||||
Sbjct: 906  tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 965

                                                                        
Query: 243  ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302
            |||||| |||||  | |||||||| ||||| |||||||  |||||||| |||||||||||
Sbjct: 966  ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 1025

                                                                        
Query: 303  cggcagcaacactggtcctcagctagagg----gtcctcctggagccaacttgtttatct 358
              |||||||| | ||||||||| ||||||    |||||||||||||||| || |||||||
Sbjct: 1026 tagcagcaaccccggtcctcagatagagggtttgtcctcctggagccaatttatttatct 1085

                                                                        
Query: 359  atcacatcccgcaagaattcggcgaccaagatctagcacatgcatttcagagttttggta 418
            | |||||||| |||||||| |||||||||||||| ||   ||| |||||| |||||||||
Sbjct: 1086 accacatccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggta 1145

             
Query: 419  g 419
            |
Sbjct: 1146 g 1146



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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score =  252 bits (127), Expect = 1e-63
 Identities = 280/331 (84%)
 Strand = Plus / Plus

                                                                          
Query: 3      aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62
              |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct: 115693 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 115752

                                                                          
Query: 63     tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122
              |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || ||
Sbjct: 115753 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 115812

                                                                          
Query: 123    taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182
              |||||| | | |||| || || || ||||||||||| ||||| |||||| |  ||| |||
Sbjct: 115813 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 115872

                                                                          
Query: 183    tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242
              | ||||||||||||| || ||||||||||||  ||  ||||||||||||||||   ||||
Sbjct: 115873 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 115932

                                                                          
Query: 243    ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302
              |||||| |||||  | |||||||| ||||| |||||||  |||||||| |||||||||||
Sbjct: 115933 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 115992

                                             
Query: 303    cggcagcaacactggtcctcagctagagggt 333
                |||||||| | ||||||||| ||||||||
Sbjct: 115993 tagcagcaaccccggtcctcagatagagggt 116023



 Score =  165 bits (83), Expect = 2e-37
 Identities = 131/147 (89%)
 Strand = Plus / Plus

                                                                          
Query: 331    ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390
              ||||||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||
Sbjct: 116109 ggtcctcctggagccaatttatttatctaccacatccctcaagaatttggcgaccaagat 116168

                                                                          
Query: 391    ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450
              || ||   ||| |||||| |||||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 116169 cttgccggtgcctttcagggttttggtagagtactgagtgctaaagtttttgtagacaaa 116228

                                         
Query: 451    gcaactggtgctagtaaatgcttcggt 477
              |||||||||  ||||||||||||||||
Sbjct: 116229 gcaactggtcttagtaaatgcttcggt 116255



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  252 bits (127), Expect = 1e-63
 Identities = 280/331 (84%)
 Strand = Plus / Plus

                                                                            
Query: 3        aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62
                |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct: 17855739 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 17855798

                                                                            
Query: 63       tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122
                |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || ||
Sbjct: 17855799 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 17855858

                                                                            
Query: 123      taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182
                |||||| | | |||| || || || ||||||||||| ||||| |||||| |  ||| |||
Sbjct: 17855859 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 17855918

                                                                            
Query: 183      tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242
                | ||||||||||||| || ||||||||||||  ||  ||||||||||||||||   ||||
Sbjct: 17855919 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 17855978

                                                                            
Query: 243      ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302
                |||||| |||||  | |||||||| ||||| |||||||  |||||||| |||||||||||
Sbjct: 17855979 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 17856038

                                               
Query: 303      cggcagcaacactggtcctcagctagagggt 333
                  |||||||| | ||||||||| ||||||||
Sbjct: 17856039 tagcagcaaccccggtcctcagatagagggt 17856069



 Score =  165 bits (83), Expect = 2e-37
 Identities = 131/147 (89%)
 Strand = Plus / Plus

                                                                            
Query: 331      ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390
                ||||||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||
Sbjct: 17856155 ggtcctcctggagccaatttatttatctaccacatccctcaagaatttggcgaccaagat 17856214

                                                                            
Query: 391      ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450
                || ||   ||| |||||| |||||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 17856215 cttgccggtgcctttcagggttttggtagagtactgagtgctaaagtttttgtagacaaa 17856274

                                           
Query: 451      gcaactggtgctagtaaatgcttcggt 477
                |||||||||  ||||||||||||||||
Sbjct: 17856275 gcaactggtcttagtaaatgcttcggt 17856301



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>gb|AY104506.1| Zea mays PCO080326 mRNA sequence
          Length = 1081

 Score =  159 bits (80), Expect = 1e-35
 Identities = 170/200 (85%)
 Strand = Plus / Plus

                                                                       
Query: 292 tcttcaagtaccggcagcaacactggtcctcagctagagggtcctcctggagccaacttg 351
           ||||| ||| || |||||||  |||| || ||| |||||||||||||||||||||| |||
Sbjct: 456 tcttcgagtcccagcagcaatcctggcccccagatagagggtcctcctggagccaatttg 515

                                                                       
Query: 352 tttatctatcacatcccgcaagaattcggcgaccaagatctagcacatgcatttcagagt 411
           || || || |||||||||||||||||||| ||||| ||||| ||   |||||| || |||
Sbjct: 516 ttcatataccacatcccgcaagaattcggtgaccatgatcttgccagtgcattccatagt 575

                                                                       
Query: 412 tttggtagagtattgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgc 471
           || ||||| ||| |||| |||||||| || |||||||| |||||||||| ||||||||||
Sbjct: 576 ttcggtagggtactgagcgccaaagttttcgtagacaaggcaactggtgttagtaaatgc 635

                               
Query: 472 ttcggttttgtaagctacga 491
           || ||||| |||||||||||
Sbjct: 636 tttggtttcgtaagctacga 655



 Score =  111 bits (56), Expect = 2e-21
 Identities = 143/172 (83%)
 Strand = Plus / Plus

                                                                       
Query: 29  tatctccgatgcaaaatcaagcaggcttccagaatatggttcagcctgtcaatcaaggaa 88
           |||||||  ||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct: 196 tatctcctgtgcaaaatcaagctgccttccagaatatggttcagcctgttaatcaaggaa 255

                                                                       
Query: 89  gctcaatacgtggcgttagttctgaactatcccctaattcagttgctaggtcattcaatt 148
           |||| || | ||| | || ||||||| | || |||||| ||||| |||| ||||| ||||
Sbjct: 256 gctcgatccatggagctaattctgaagtttcgcctaatccagttcctagatcatttaatt 315

                                                               
Query: 149 caatgcagttgggcagcccttatccagctgggcctggtatgcagtatcctgg 200
           |   ||||||||| ||||| ||| |  ||  ||||||| |||||||||||||
Sbjct: 316 ccgcgcagttgggaagcccctattcgcctttgcctggtttgcagtatcctgg 367



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>ref|NM_190082.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1383

 Score =  139 bits (70), Expect = 1e-29
 Identities = 187/226 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69
            ||||||||||||||||| |||||||| ||||| ||||||||    ||||  || ||||||
Sbjct: 787  ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 846

                                                                        
Query: 70   cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129
            || ||||| |||||||||| ||| ||||| || || |   ||||||| ||||||||||||
Sbjct: 847  caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 906

                                                                        
Query: 130  gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189
            ||| |||| ||||||||  ||||||||||  |||||||||||||| |||  |||||| ||
Sbjct: 907  gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 966

                                                          
Query: 190  cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235
            |||||| |||| || || |||||||||  ||| |||| ||||||||
Sbjct: 967  cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 1012



 Score =  103 bits (52), Expect = 6e-19
 Identities = 145/176 (82%)
 Strand = Plus / Plus

                                                                        
Query: 326  tagagggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgacc 385
            |||| |||||||| ||||| ||  | ||||||||||| ||||| ||||| |  || ||||
Sbjct: 1103 tagaaggtcctccaggagctaatctatttatctatcatatcccacaagattatggggacc 1162

                                                                        
Query: 386  aagatctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtag 445
            |||| ||  |  ||||||| ||||| || ||||||||| | ||||| || || |||||||
Sbjct: 1163 aagacctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtag 1222

                                                                    
Query: 446  acaaagcaactggtgctagtaaatgcttcggttttgtaagctacgattcacctgct 501
            |||||||||| ||| | || |||||||| |||||||||||||||||||| ||||||
Sbjct: 1223 acaaagcaacgggttccagcaaatgctttggttttgtaagctacgattctcctgct 1278



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 1e-29
 Identities = 187/226 (82%)
 Strand = Plus / Plus

                                                                            
Query: 10       ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69
                ||||||||||||||||| |||||||| ||||| ||||||||    ||||  || ||||||
Sbjct: 41189916 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 41189975

                                                                            
Query: 70       cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129
                || ||||| |||||||||| ||| ||||| || || |   ||||||| ||||||||||||
Sbjct: 41189976 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 41190035

                                                                            
Query: 130      gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189
                ||| |||| ||||||||  ||||||||||  |||||||||||||| |||  |||||| ||
Sbjct: 41190036 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 41190095

                                                              
Query: 190      cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235
                |||||| |||| || || |||||||||  ||| |||| ||||||||
Sbjct: 41190096 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 41190141



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                            
Query: 331      ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390
                |||||||| ||||| ||  | ||||||||||| ||||| ||||| |  || |||||||| 
Sbjct: 41190606 ggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagac 41190665

                                                                            
Query: 391      ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450
                ||  |  ||||||| ||||| || ||||||||| | ||||| || || ||||||||||||
Sbjct: 41190666 ctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaa 41190725

                                       
Query: 451      gcaactggtgctagtaaatgctt 473
                ||||| ||| | || ||||||||
Sbjct: 41190726 gcaacgggttccagcaaatgctt 41190748



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 475      ggttttgtaagctacgattcacctgct 501
                |||||||||||||||||||| ||||||
Sbjct: 41190853 ggttttgtaagctacgattctcctgct 41190879



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>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1150F11
          Length = 130355

 Score =  139 bits (70), Expect = 1e-29
 Identities = 187/226 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69
            ||||||||||||||||| |||||||| ||||| ||||||||    ||||  || ||||||
Sbjct: 6831 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 6890

                                                                        
Query: 70   cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129
            || ||||| |||||||||| ||| ||||| || || |   ||||||| ||||||||||||
Sbjct: 6891 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 6950

                                                                        
Query: 130  gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189
            ||| |||| ||||||||  ||||||||||  |||||||||||||| |||  |||||| ||
Sbjct: 6951 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 7010

                                                          
Query: 190  cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235
            |||||| |||| || || |||||||||  ||| |||| ||||||||
Sbjct: 7011 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 7056



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                        
Query: 331  ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390
            |||||||| ||||| ||  | ||||||||||| ||||| ||||| |  || |||||||| 
Sbjct: 7521 ggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagac 7580

                                                                        
Query: 391  ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450
            ||  |  ||||||| ||||| || ||||||||| | ||||| || || ||||||||||||
Sbjct: 7581 ctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaa 7640

                                   
Query: 451  gcaactggtgctagtaaatgctt 473
            ||||| ||| | || ||||||||
Sbjct: 7641 gcaacgggttccagcaaatgctt 7663



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 475  ggttttgtaagctacgattcacctgct 501
            |||||||||||||||||||| ||||||
Sbjct: 7768 ggttttgtaagctacgattctcctgct 7794



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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score =  139 bits (70), Expect = 1e-29
 Identities = 187/226 (82%)
 Strand = Plus / Plus

                                                                         
Query: 10    ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69
             ||||||||||||||||| |||||||| ||||| ||||||||    ||||  || ||||||
Sbjct: 86971 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 87030

                                                                         
Query: 70    cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129
             || ||||| |||||||||| ||| ||||| || || |   ||||||| ||||||||||||
Sbjct: 87031 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 87090

                                                                         
Query: 130   gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189
             ||| |||| ||||||||  ||||||||||  |||||||||||||| |||  |||||| ||
Sbjct: 87091 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 87150

                                                           
Query: 190   cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235
             |||||| |||| || || |||||||||  ||| |||| ||||||||
Sbjct: 87151 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 87196



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                         
Query: 331   ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390
             |||||||| ||||| ||  | ||||||||||| ||||| ||||| |  || |||||||| 
Sbjct: 87661 ggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagac 87720

                                                                         
Query: 391   ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450
             ||  |  ||||||| ||||| || ||||||||| | ||||| || || ||||||||||||
Sbjct: 87721 ctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaa 87780

                                    
Query: 451   gcaactggtgctagtaaatgctt 473
             ||||| ||| | || ||||||||
Sbjct: 87781 gcaacgggttccagcaaatgctt 87803



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 475   ggttttgtaagctacgattcacctgct 501
             |||||||||||||||||||| ||||||
Sbjct: 87908 ggttttgtaagctacgattctcctgct 87934



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>dbj|AK099501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028I07, full
            insert sequence
          Length = 1837

 Score =  139 bits (70), Expect = 1e-29
 Identities = 187/226 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69
            ||||||||||||||||| |||||||| ||||| ||||||||    ||||  || ||||||
Sbjct: 963  ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 1022

                                                                        
Query: 70   cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129
            || ||||| |||||||||| ||| ||||| || || |   ||||||| ||||||||||||
Sbjct: 1023 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 1082

                                                                        
Query: 130  gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189
            ||| |||| ||||||||  ||||||||||  |||||||||||||| |||  |||||| ||
Sbjct: 1083 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 1142

                                                          
Query: 190  cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235
            |||||| |||| || || |||||||||  ||| |||| ||||||||
Sbjct: 1143 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 1188



 Score =  103 bits (52), Expect = 6e-19
 Identities = 145/176 (82%)
 Strand = Plus / Plus

                                                                        
Query: 326  tagagggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgacc 385
            |||| |||||||| ||||| ||  | ||||||||||| ||||| ||||| |  || ||||
Sbjct: 1279 tagaaggtcctccaggagctaatctatttatctatcatatcccacaagattatggggacc 1338

                                                                        
Query: 386  aagatctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtag 445
            |||| ||  |  ||||||| ||||| || ||||||||| | ||||| || || |||||||
Sbjct: 1339 aagacctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtag 1398

                                                                    
Query: 446  acaaagcaactggtgctagtaaatgcttcggttttgtaagctacgattcacctgct 501
            |||||||||| ||| | || |||||||| |||||||||||||||||||| ||||||
Sbjct: 1399 acaaagcaacgggttccagcaaatgctttggttttgtaagctacgattctcctgct 1454



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>ref|NM_116545.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110
            transcript variant AT4G03110.1 mRNA, complete cds
          Length = 1759

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 425  tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttgtaa 484
            |||||||||| || |||||||||||||| |||||||  || ||||| ||||||||||| |
Sbjct: 1254 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggttttgtta 1313

                
Query: 485  gcta 488
            ||||
Sbjct: 1314 gcta 1317



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>gb|AY084669.1| Arabidopsis thaliana clone 114653 mRNA, complete sequence
          Length = 1746

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 425  tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttgtaa 484
            |||||||||| || |||||||||||||| |||||||  || ||||| ||||||||||| |
Sbjct: 1255 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggttttgtta 1314

                
Query: 485  gcta 488
            ||||
Sbjct: 1315 gcta 1318



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>gb|AY021985.1| Oryza sativa microsatellite MRG4310 containing (TC)X12, closest to
           marker R1014A, genomic sequence
          Length = 224

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                       
Query: 398 atgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaagcaactg 457
           ||||||| ||||| || ||||||||| | ||||| || || ||||||||||||||||| |
Sbjct: 19  atgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaagcaacgg 78

                           
Query: 458 gtgctagtaaatgctt 473
           || | || ||||||||
Sbjct: 79  gttccagcaaatgctt 94



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 475 ggttttgtaagctacgattcacctgct 501
           |||||||||||||||||||| ||||||
Sbjct: 187 ggttttgtaagctacgattctcctgct 213



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>ref|NM_178963.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110
            transcript variant AT4G03110.2 mRNA, complete cds
          Length = 1847

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 425  tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477
            |||||||||| || |||||||||||||| |||||||  || ||||| ||||||
Sbjct: 1247 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 1299



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>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
            sequence
          Length = 98913

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 425  tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477
            |||||||||| || |||||||||||||| |||||||  || ||||| ||||||
Sbjct: 6435 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 6487



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>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17
            cM, complete sequence
          Length = 136335

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 425  tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477
            |||||||||| || |||||||||||||| |||||||  || ||||| ||||||
Sbjct: 9681 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 9629



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>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 425   tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477
             |||||||||| || |||||||||||||| |||||||  || ||||| ||||||
Sbjct: 28052 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 28000



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>gb|AY065261.1| Arabidopsis thaliana putative ribonucleoprotein (At4g03110) mRNA,
            complete cds
          Length = 1842

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 425  tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477
            |||||||||| || |||||||||||||| |||||||  || ||||| ||||||
Sbjct: 1223 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 1275



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>gb|AY107712.1| Zea mays PCO079656 mRNA sequence
          Length = 471

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 445 gacaaagcaactggtgctagtaaatgcttcggttttgtaagctacgattcacctgc 500
           ||||||||||| || |  || ||||||||||||||||| |||||||| || |||||
Sbjct: 38  gacaaagcaacgggcgtgagcaaatgcttcggttttgtgagctacgactctcctgc 93



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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     tcctaatgcaaatgctacatct 285
               ||||||||||||||||||||||
Sbjct: 1893710 tcctaatgcaaatgctacatct 1893731



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>gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequence
          Length = 137074

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 264   tcctaatgcaaatgctacatct 285
             ||||||||||||||||||||||
Sbjct: 34144 tcctaatgcaaatgctacatct 34165



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>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence
          Length = 195082

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 400    gcatttcagagttttggtaga 420
              |||||||||||||||||||||
Sbjct: 165467 gcatttcagagttttggtaga 165447



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>dbj|AB248638.1| Uncultured bacterium gene for 16S rRNA, partial sequence,
           clone:BHB09
          Length = 1578

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 416 gtagagtattgagtgccaaag 436
           |||||||||||||||||||||
Sbjct: 182 gtagagtattgagtgccaaag 202



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>gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosome 18, complete
             sequence
          Length = 197898

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 400   gcatttcagagttttggtaga 420
             |||||||||||||||||||||
Sbjct: 44901 gcatttcagagttttggtaga 44881



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>emb|CT573421.5| M.truncatula DNA sequence from clone MTH2-27B10 on chromosome 3,
             complete sequence
          Length = 123669

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   atgcaaatgctacatctccca 289
             |||||||||||||||||||||
Sbjct: 35194 atgcaaatgctacatctccca 35214



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>ref|XM_501542.1| Yarrowia lipolytica CLIB122, YALI0C07040g predicted mRNA
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 477  ttttgtaagctacgattcac 496
            ||||||||||||||||||||
Sbjct: 1710 ttttgtaagctacgattcac 1729



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>gb|AC159196.2| Mus musculus BAC clone RP23-430O17 from chromosome 13, complete sequence
          Length = 198595

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 119    cccctaattcagttgctaggtcat 142
              ||||||||||||||||| ||||||
Sbjct: 191075 cccctaattcagttgcttggtcat 191098



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>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12
          Length = 333050

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    caactggtgctagtaaatgc 471
              ||||||||||||||||||||
Sbjct: 200523 caactggtgctagtaaatgc 200504



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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 273     aaatgctacatctcccacat 292
               ||||||||||||||||||||
Sbjct: 1575482 aaatgctacatctcccacat 1575463



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>gb|AC154639.2| Mus musculus BAC clone RP23-306D9 from chromosome 13, complete sequence
          Length = 187693

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   cccctaattcagttgctaggtcat 142
             ||||||||||||||||| ||||||
Sbjct: 11376 cccctaattcagttgcttggtcat 11399



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 477    ttttgtaagctacgattcac 496
              ||||||||||||||||||||
Sbjct: 943783 ttttgtaagctacgattcac 943802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,921,177
Number of Sequences: 3902068
Number of extensions: 3921177
Number of successful extensions: 70184
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70045
Number of HSP's gapped (non-prelim): 126
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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