| Clone Name | bags5i16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067B10, full insert sequence Length = 1739 Score = 436 bits (220), Expect = e-119 Identities = 433/504 (85%) Strand = Plus / Plus Query: 3 aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62 |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| Sbjct: 890 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 949 Query: 63 tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122 |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || || Sbjct: 950 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 1009 Query: 123 taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182 |||||| | | |||| || || || ||||||||||| ||||| |||||| | ||| ||| Sbjct: 1010 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 1069 Query: 183 tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242 | ||||||||||||| || |||||||||||| || |||||||||||||||| |||| Sbjct: 1070 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 1129 Query: 243 ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302 |||||| ||||| | |||||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 1130 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 1189 Query: 303 cggcagcaacactggtcctcagctagagggtcctcctggagccaacttgtttatctatca 362 |||||||| | ||||||||| |||||||||||||||||||||| || |||||||| || Sbjct: 1190 tagcagcaaccccggtcctcagatagagggtcctcctggagccaatttatttatctacca 1249 Query: 363 catcccgcaagaattcggcgaccaagatctagcacatgcatttcagagttttggtagagt 422 |||||| |||||||| |||||||||||||| || ||| |||||| ||||||||||||| Sbjct: 1250 catccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggtagagt 1309 Query: 423 attgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttgt 482 | ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| | Sbjct: 1310 actgagtgctaaagtttttgtagacaaagcaactggtcttagtaaatgcttcggttttat 1369 Query: 483 aagctacgattcacctgctcctgc 506 |||||| ||||| |||||| |||| Sbjct: 1370 aagctatgattctcctgcttctgc 1393
>dbj|AK073553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045O20, full insert sequence Length = 2722 Score = 422 bits (213), Expect = e-115 Identities = 433/505 (85%), Gaps = 1/505 (0%) Strand = Plus / Plus Query: 3 aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62 |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| Sbjct: 1910 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 1969 Query: 63 tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122 |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || || Sbjct: 1970 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 2029 Query: 123 taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182 |||||| | | |||| || || || ||||||||||| ||||| |||||| | ||| ||| Sbjct: 2030 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 2089 Query: 183 tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242 | ||||||||||||| || |||||||||||| || |||||||||||||||| |||| Sbjct: 2090 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 2149 Query: 243 ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302 |||||| ||||| | |||||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 2150 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 2209 Query: 303 cggcagcaacactggtcctcagctaga-gggtcctcctggagccaacttgtttatctatc 361 |||||||| | ||||||||| |||| |||||||||||||||||| || |||||||| | Sbjct: 2210 tagcagcaaccccggtcctcagatagaggggtcctcctggagccaatttatttatctacc 2269 Query: 362 acatcccgcaagaattcggcgaccaagatctagcacatgcatttcagagttttggtagag 421 ||||||| |||||||| |||||||||||||| || ||| |||||| |||||||||||| Sbjct: 2270 acatccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggtagag 2329 Query: 422 tattgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttg 481 || ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2330 tactgagtgctaaagtttttgtagacaaagcaactggtcttagtaaatgcttcggtttta 2389 Query: 482 taagctacgattcacctgctcctgc 506 ||||||| ||||| |||||| |||| Sbjct: 2390 taagctatgattctcctgcttctgc 2414
>ref|XM_475151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1146 Score = 309 bits (156), Expect = 5e-81 Identities = 355/421 (84%), Gaps = 4/421 (0%) Strand = Plus / Plus Query: 3 aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62 |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| Sbjct: 726 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 785 Query: 63 tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122 |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || || Sbjct: 786 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 845 Query: 123 taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182 |||||| | | |||| || || || ||||||||||| ||||| |||||| | ||| ||| Sbjct: 846 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 905 Query: 183 tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242 | ||||||||||||| || |||||||||||| || |||||||||||||||| |||| Sbjct: 906 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 965 Query: 243 ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302 |||||| ||||| | |||||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 966 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 1025 Query: 303 cggcagcaacactggtcctcagctagagg----gtcctcctggagccaacttgtttatct 358 |||||||| | ||||||||| |||||| |||||||||||||||| || ||||||| Sbjct: 1026 tagcagcaaccccggtcctcagatagagggtttgtcctcctggagccaatttatttatct 1085 Query: 359 atcacatcccgcaagaattcggcgaccaagatctagcacatgcatttcagagttttggta 418 | |||||||| |||||||| |||||||||||||| || ||| |||||| ||||||||| Sbjct: 1086 accacatccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggta 1145 Query: 419 g 419 | Sbjct: 1146 g 1146
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 252 bits (127), Expect = 1e-63 Identities = 280/331 (84%) Strand = Plus / Plus Query: 3 aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62 |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| Sbjct: 115693 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 115752 Query: 63 tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122 |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || || Sbjct: 115753 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 115812 Query: 123 taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182 |||||| | | |||| || || || ||||||||||| ||||| |||||| | ||| ||| Sbjct: 115813 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 115872 Query: 183 tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242 | ||||||||||||| || |||||||||||| || |||||||||||||||| |||| Sbjct: 115873 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 115932 Query: 243 ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302 |||||| ||||| | |||||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 115933 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 115992 Query: 303 cggcagcaacactggtcctcagctagagggt 333 |||||||| | ||||||||| |||||||| Sbjct: 115993 tagcagcaaccccggtcctcagatagagggt 116023 Score = 165 bits (83), Expect = 2e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 331 ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390 ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||| Sbjct: 116109 ggtcctcctggagccaatttatttatctaccacatccctcaagaatttggcgaccaagat 116168 Query: 391 ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450 || || ||| |||||| |||||||||||||| ||||||| ||||| |||||||||||| Sbjct: 116169 cttgccggtgcctttcagggttttggtagagtactgagtgctaaagtttttgtagacaaa 116228 Query: 451 gcaactggtgctagtaaatgcttcggt 477 ||||||||| |||||||||||||||| Sbjct: 116229 gcaactggtcttagtaaatgcttcggt 116255
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 252 bits (127), Expect = 1e-63 Identities = 280/331 (84%) Strand = Plus / Plus Query: 3 aacctatggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaa 62 |||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| Sbjct: 17855739 aacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaa 17855798 Query: 63 tatggttcagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccc 122 |||||||||| |||| |||||||||||||| || ||||| || | ||||||||| || || Sbjct: 17855799 tatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacc 17855858 Query: 123 taattcagttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcc 182 |||||| | | |||| || || || ||||||||||| ||||| |||||| | ||| ||| Sbjct: 17855859 taattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcc 17855918 Query: 183 tggtatgcagtatcctgggtcatatcctggtggtggcatcaatagtcgtccttacatgaa 242 | ||||||||||||| || |||||||||||| || |||||||||||||||| |||| Sbjct: 17855919 tagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaa 17855978 Query: 243 ttctcataattccgttaaagttcctaatgcaaatgctacatctcccacatcttcaagtac 302 |||||| ||||| | |||||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 17855979 ttctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtac 17856038 Query: 303 cggcagcaacactggtcctcagctagagggt 333 |||||||| | ||||||||| |||||||| Sbjct: 17856039 tagcagcaaccccggtcctcagatagagggt 17856069 Score = 165 bits (83), Expect = 2e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 331 ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390 ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||| Sbjct: 17856155 ggtcctcctggagccaatttatttatctaccacatccctcaagaatttggcgaccaagat 17856214 Query: 391 ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450 || || ||| |||||| |||||||||||||| ||||||| ||||| |||||||||||| Sbjct: 17856215 cttgccggtgcctttcagggttttggtagagtactgagtgctaaagtttttgtagacaaa 17856274 Query: 451 gcaactggtgctagtaaatgcttcggt 477 ||||||||| |||||||||||||||| Sbjct: 17856275 gcaactggtcttagtaaatgcttcggt 17856301
>gb|AY104506.1| Zea mays PCO080326 mRNA sequence Length = 1081 Score = 159 bits (80), Expect = 1e-35 Identities = 170/200 (85%) Strand = Plus / Plus Query: 292 tcttcaagtaccggcagcaacactggtcctcagctagagggtcctcctggagccaacttg 351 ||||| ||| || ||||||| |||| || ||| |||||||||||||||||||||| ||| Sbjct: 456 tcttcgagtcccagcagcaatcctggcccccagatagagggtcctcctggagccaatttg 515 Query: 352 tttatctatcacatcccgcaagaattcggcgaccaagatctagcacatgcatttcagagt 411 || || || |||||||||||||||||||| ||||| ||||| || |||||| || ||| Sbjct: 516 ttcatataccacatcccgcaagaattcggtgaccatgatcttgccagtgcattccatagt 575 Query: 412 tttggtagagtattgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgc 471 || ||||| ||| |||| |||||||| || |||||||| |||||||||| |||||||||| Sbjct: 576 ttcggtagggtactgagcgccaaagttttcgtagacaaggcaactggtgttagtaaatgc 635 Query: 472 ttcggttttgtaagctacga 491 || ||||| ||||||||||| Sbjct: 636 tttggtttcgtaagctacga 655 Score = 111 bits (56), Expect = 2e-21 Identities = 143/172 (83%) Strand = Plus / Plus Query: 29 tatctccgatgcaaaatcaagcaggcttccagaatatggttcagcctgtcaatcaaggaa 88 ||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct: 196 tatctcctgtgcaaaatcaagctgccttccagaatatggttcagcctgttaatcaaggaa 255 Query: 89 gctcaatacgtggcgttagttctgaactatcccctaattcagttgctaggtcattcaatt 148 |||| || | ||| | || ||||||| | || |||||| ||||| |||| ||||| |||| Sbjct: 256 gctcgatccatggagctaattctgaagtttcgcctaatccagttcctagatcatttaatt 315 Query: 149 caatgcagttgggcagcccttatccagctgggcctggtatgcagtatcctgg 200 | ||||||||| ||||| ||| | || ||||||| ||||||||||||| Sbjct: 316 ccgcgcagttgggaagcccctattcgcctttgcctggtttgcagtatcctgg 367
>ref|NM_190082.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1383 Score = 139 bits (70), Expect = 1e-29 Identities = 187/226 (82%) Strand = Plus / Plus Query: 10 ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69 ||||||||||||||||| |||||||| ||||| |||||||| |||| || |||||| Sbjct: 787 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 846 Query: 70 cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129 || ||||| |||||||||| ||| ||||| || || | ||||||| |||||||||||| Sbjct: 847 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 906 Query: 130 gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189 ||| |||| |||||||| |||||||||| |||||||||||||| ||| |||||| || Sbjct: 907 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 966 Query: 190 cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235 |||||| |||| || || ||||||||| ||| |||| |||||||| Sbjct: 967 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 1012 Score = 103 bits (52), Expect = 6e-19 Identities = 145/176 (82%) Strand = Plus / Plus Query: 326 tagagggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgacc 385 |||| |||||||| ||||| || | ||||||||||| ||||| ||||| | || |||| Sbjct: 1103 tagaaggtcctccaggagctaatctatttatctatcatatcccacaagattatggggacc 1162 Query: 386 aagatctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtag 445 |||| || | ||||||| ||||| || ||||||||| | ||||| || || ||||||| Sbjct: 1163 aagacctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtag 1222 Query: 446 acaaagcaactggtgctagtaaatgcttcggttttgtaagctacgattcacctgct 501 |||||||||| ||| | || |||||||| |||||||||||||||||||| |||||| Sbjct: 1223 acaaagcaacgggttccagcaaatgctttggttttgtaagctacgattctcctgct 1278
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 139 bits (70), Expect = 1e-29 Identities = 187/226 (82%) Strand = Plus / Plus Query: 10 ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69 ||||||||||||||||| |||||||| ||||| |||||||| |||| || |||||| Sbjct: 41189916 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 41189975 Query: 70 cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129 || ||||| |||||||||| ||| ||||| || || | ||||||| |||||||||||| Sbjct: 41189976 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 41190035 Query: 130 gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189 ||| |||| |||||||| |||||||||| |||||||||||||| ||| |||||| || Sbjct: 41190036 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 41190095 Query: 190 cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235 |||||| |||| || || ||||||||| ||| |||| |||||||| Sbjct: 41190096 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 41190141 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 331 ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390 |||||||| ||||| || | ||||||||||| ||||| ||||| | || |||||||| Sbjct: 41190606 ggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagac 41190665 Query: 391 ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450 || | ||||||| ||||| || ||||||||| | ||||| || || |||||||||||| Sbjct: 41190666 ctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaa 41190725 Query: 451 gcaactggtgctagtaaatgctt 473 ||||| ||| | || |||||||| Sbjct: 41190726 gcaacgggttccagcaaatgctt 41190748 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggttttgtaagctacgattcacctgct 501 |||||||||||||||||||| |||||| Sbjct: 41190853 ggttttgtaagctacgattctcctgct 41190879
>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1150F11 Length = 130355 Score = 139 bits (70), Expect = 1e-29 Identities = 187/226 (82%) Strand = Plus / Plus Query: 10 ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69 ||||||||||||||||| |||||||| ||||| |||||||| |||| || |||||| Sbjct: 6831 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 6890 Query: 70 cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129 || ||||| |||||||||| ||| ||||| || || | ||||||| |||||||||||| Sbjct: 6891 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 6950 Query: 130 gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189 ||| |||| |||||||| |||||||||| |||||||||||||| ||| |||||| || Sbjct: 6951 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 7010 Query: 190 cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235 |||||| |||| || || ||||||||| ||| |||| |||||||| Sbjct: 7011 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 7056 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 331 ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390 |||||||| ||||| || | ||||||||||| ||||| ||||| | || |||||||| Sbjct: 7521 ggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagac 7580 Query: 391 ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450 || | ||||||| ||||| || ||||||||| | ||||| || || |||||||||||| Sbjct: 7581 ctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaa 7640 Query: 451 gcaactggtgctagtaaatgctt 473 ||||| ||| | || |||||||| Sbjct: 7641 gcaacgggttccagcaaatgctt 7663 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggttttgtaagctacgattcacctgct 501 |||||||||||||||||||| |||||| Sbjct: 7768 ggttttgtaagctacgattctcctgct 7794
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 139 bits (70), Expect = 1e-29 Identities = 187/226 (82%) Strand = Plus / Plus Query: 10 ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69 ||||||||||||||||| |||||||| ||||| |||||||| |||| || |||||| Sbjct: 86971 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 87030 Query: 70 cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129 || ||||| |||||||||| ||| ||||| || || | ||||||| |||||||||||| Sbjct: 87031 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 87090 Query: 130 gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189 ||| |||| |||||||| |||||||||| |||||||||||||| ||| |||||| || Sbjct: 87091 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 87150 Query: 190 cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235 |||||| |||| || || ||||||||| ||| |||| |||||||| Sbjct: 87151 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 87196 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 331 ggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgaccaagat 390 |||||||| ||||| || | ||||||||||| ||||| ||||| | || |||||||| Sbjct: 87661 ggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagac 87720 Query: 391 ctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaa 450 || | ||||||| ||||| || ||||||||| | ||||| || || |||||||||||| Sbjct: 87721 ctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaa 87780 Query: 451 gcaactggtgctagtaaatgctt 473 ||||| ||| | || |||||||| Sbjct: 87781 gcaacgggttccagcaaatgctt 87803 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggttttgtaagctacgattcacctgct 501 |||||||||||||||||||| |||||| Sbjct: 87908 ggttttgtaagctacgattctcctgct 87934
>dbj|AK099501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028I07, full insert sequence Length = 1837 Score = 139 bits (70), Expect = 1e-29 Identities = 187/226 (82%) Strand = Plus / Plus Query: 10 ggacttatgcagtaccctttatctccgatgcaaaatcaagcaggcttccagaatatggtt 69 ||||||||||||||||| |||||||| ||||| |||||||| |||| || |||||| Sbjct: 963 ggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggtt 1022 Query: 70 cagcctgtcaatcaaggaagctcaatacgtggcgttagttctgaactatcccctaattca 129 || ||||| |||||||||| ||| ||||| || || | ||||||| |||||||||||| Sbjct: 1023 caacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattca 1082 Query: 130 gttgctaggtcattcaattcaatgcagttgggcagcccttatccagctgggcctggtatg 189 ||| |||| |||||||| |||||||||| |||||||||||||| ||| |||||| || Sbjct: 1083 gttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtg 1142 Query: 190 cagtatcctgggtcatatcctggtggtggcatcaatagtcgtcctt 235 |||||| |||| || || ||||||||| ||| |||| |||||||| Sbjct: 1143 cagtatgctggatcctaccctggtggtctcatgaataatcgtcctt 1188 Score = 103 bits (52), Expect = 6e-19 Identities = 145/176 (82%) Strand = Plus / Plus Query: 326 tagagggtcctcctggagccaacttgtttatctatcacatcccgcaagaattcggcgacc 385 |||| |||||||| ||||| || | ||||||||||| ||||| ||||| | || |||| Sbjct: 1279 tagaaggtcctccaggagctaatctatttatctatcatatcccacaagattatggggacc 1338 Query: 386 aagatctagcacatgcatttcagagttttggtagagtattgagtgccaaagtatttgtag 445 |||| || | ||||||| ||||| || ||||||||| | ||||| || || ||||||| Sbjct: 1339 aagacctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtag 1398 Query: 446 acaaagcaactggtgctagtaaatgcttcggttttgtaagctacgattcacctgct 501 |||||||||| ||| | || |||||||| |||||||||||||||||||| |||||| Sbjct: 1399 acaaagcaacgggttccagcaaatgctttggttttgtaagctacgattctcctgct 1454
>ref|NM_116545.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110 transcript variant AT4G03110.1 mRNA, complete cds Length = 1759 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttgtaa 484 |||||||||| || |||||||||||||| ||||||| || ||||| ||||||||||| | Sbjct: 1254 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggttttgtta 1313 Query: 485 gcta 488 |||| Sbjct: 1314 gcta 1317
>gb|AY084669.1| Arabidopsis thaliana clone 114653 mRNA, complete sequence Length = 1746 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggttttgtaa 484 |||||||||| || |||||||||||||| ||||||| || ||||| ||||||||||| | Sbjct: 1255 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggttttgtta 1314 Query: 485 gcta 488 |||| Sbjct: 1315 gcta 1318
>gb|AY021985.1| Oryza sativa microsatellite MRG4310 containing (TC)X12, closest to marker R1014A, genomic sequence Length = 224 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 398 atgcatttcagagttttggtagagtattgagtgccaaagtatttgtagacaaagcaactg 457 ||||||| ||||| || ||||||||| | ||||| || || ||||||||||||||||| | Sbjct: 19 atgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaagcaacgg 78 Query: 458 gtgctagtaaatgctt 473 || | || |||||||| Sbjct: 79 gttccagcaaatgctt 94 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 475 ggttttgtaagctacgattcacctgct 501 |||||||||||||||||||| |||||| Sbjct: 187 ggttttgtaagctacgattctcctgct 213
>ref|NM_178963.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110 transcript variant AT4G03110.2 mRNA, complete cds Length = 1847 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477 |||||||||| || |||||||||||||| ||||||| || ||||| |||||| Sbjct: 1247 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 1299
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete sequence Length = 98913 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477 |||||||||| || |||||||||||||| ||||||| || ||||| |||||| Sbjct: 6435 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 6487
>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence Length = 136335 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477 |||||||||| || |||||||||||||| ||||||| || ||||| |||||| Sbjct: 9681 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 9629
>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8 Length = 195429 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477 |||||||||| || |||||||||||||| ||||||| || ||||| |||||| Sbjct: 28052 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 28000
>gb|AY065261.1| Arabidopsis thaliana putative ribonucleoprotein (At4g03110) mRNA, complete cds Length = 1842 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 425 tgagtgccaaagtatttgtagacaaagcaactggtgctagtaaatgcttcggt 477 |||||||||| || |||||||||||||| ||||||| || ||||| |||||| Sbjct: 1223 tgagtgccaaggtttttgtagacaaagccactggtgtaagcaaatgtttcggt 1275
>gb|AY107712.1| Zea mays PCO079656 mRNA sequence Length = 471 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Plus Query: 445 gacaaagcaactggtgctagtaaatgcttcggttttgtaagctacgattcacctgc 500 ||||||||||| || | || ||||||||||||||||| |||||||| || ||||| Sbjct: 38 gacaaagcaacgggcgtgagcaaatgcttcggttttgtgagctacgactctcctgc 93
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 tcctaatgcaaatgctacatct 285 |||||||||||||||||||||| Sbjct: 1893710 tcctaatgcaaatgctacatct 1893731
>gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequence Length = 137074 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 tcctaatgcaaatgctacatct 285 |||||||||||||||||||||| Sbjct: 34144 tcctaatgcaaatgctacatct 34165
>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence Length = 195082 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gcatttcagagttttggtaga 420 ||||||||||||||||||||| Sbjct: 165467 gcatttcagagttttggtaga 165447
>dbj|AB248638.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone:BHB09 Length = 1578 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 gtagagtattgagtgccaaag 436 ||||||||||||||||||||| Sbjct: 182 gtagagtattgagtgccaaag 202
>gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosome 18, complete sequence Length = 197898 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gcatttcagagttttggtaga 420 ||||||||||||||||||||| Sbjct: 44901 gcatttcagagttttggtaga 44881
>emb|CT573421.5| M.truncatula DNA sequence from clone MTH2-27B10 on chromosome 3, complete sequence Length = 123669 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 atgcaaatgctacatctccca 289 ||||||||||||||||||||| Sbjct: 35194 atgcaaatgctacatctccca 35214
>ref|XM_501542.1| Yarrowia lipolytica CLIB122, YALI0C07040g predicted mRNA Length = 1821 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ttttgtaagctacgattcac 496 |||||||||||||||||||| Sbjct: 1710 ttttgtaagctacgattcac 1729
>gb|AC159196.2| Mus musculus BAC clone RP23-430O17 from chromosome 13, complete sequence Length = 198595 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cccctaattcagttgctaggtcat 142 ||||||||||||||||| |||||| Sbjct: 191075 cccctaattcagttgcttggtcat 191098
>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12 Length = 333050 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 caactggtgctagtaaatgc 471 |||||||||||||||||||| Sbjct: 200523 caactggtgctagtaaatgc 200504
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 aaatgctacatctcccacat 292 |||||||||||||||||||| Sbjct: 1575482 aaatgctacatctcccacat 1575463
>gb|AC154639.2| Mus musculus BAC clone RP23-306D9 from chromosome 13, complete sequence Length = 187693 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cccctaattcagttgctaggtcat 142 ||||||||||||||||| |||||| Sbjct: 11376 cccctaattcagttgcttggtcat 11399
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ttttgtaagctacgattcac 496 |||||||||||||||||||| Sbjct: 943783 ttttgtaagctacgattcac 943802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,921,177 Number of Sequences: 3902068 Number of extensions: 3921177 Number of successful extensions: 70184 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70045 Number of HSP's gapped (non-prelim): 126 length of query: 511 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 488 effective length of database: 17,143,297,704 effective search space: 8365929279552 effective search space used: 8365929279552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)