| Clone Name | bags5i14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041C16, full insert sequence Length = 1992 Score = 180 bits (91), Expect = 3e-42 Identities = 166/191 (86%) Strand = Plus / Plus Query: 37 taggtgctgaaaacctgccaatgccagctcagtggcatcgcatagctgttcataatgagc 96 |||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| Sbjct: 1028 taggtgctgaaaacttgccaatgccagctcagtggcatcgaatatctgttcacaatgagc 1087 Query: 97 accttggtacatatgctgttcgaaagttggttaagaatgctgcagtctatgttgagggtg 156 | |||||| ||| ||| |||| ||||| || |||||| |||||||||| |||||||||| Sbjct: 1088 agcttggtgcatttgccgttcagaagttagtcaagaattctgcagtctacgttgagggtg 1147 Query: 157 atattgagactagagtctacaatgatgacatcaataatctagtgaaaattgtacctgaga 216 |||||||||| |||||||||||||| || ||| ||| |||||||| | |||| |||| Sbjct: 1148 atattgagaccagagtctacaatgacagaattaatgatcaagtgaaaaatataccagaga 1207 Query: 217 tctgtgtgcgg 227 ||||||||||| Sbjct: 1208 tctgtgtgcgg 1218 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 gcaaatcattggaagagttaaggga 298 ||||||||||||| ||||||||||| Sbjct: 1562 gcaaatcattggaggagttaaggga 1586
>gb|AY107846.1| Zea mays PCO073825 mRNA sequence Length = 1105 Score = 107 bits (54), Expect = 3e-20 Identities = 171/210 (81%) Strand = Plus / Plus Query: 52 tgccaatgccagctcagtggcatcgcatagctgttcataatgagcaccttggtacatatg 111 |||||| ||||||||||||||| ||||||||||| |||||||| || | || | |||| Sbjct: 605 tgccaaagccagctcagtggcaccgcatagctgtccataatgactacttaagtgcttatg 664 Query: 112 ctgttcgaaagttggttaagaatgctgcagtctatgttgagggtgatattgagactagag 171 |||||| ||| |||| |||||| |||| ||||||||||||||||||||||| || || | Sbjct: 665 ctgttcagaagctggtgaagaattctgctgtctatgttgagggtgatattgaaaccaggg 724 Query: 172 tctacaatgatgacatcaataatctagtgaaaattgtacctgagatctgtgtgcggtttg 231 |||||||||| | ||| ||| ||| |||| |||||||||| ||||| || || Sbjct: 725 tctacaatgacagtgttaatgatcaagtcaaaaacatacctgagatatgtgttcgacgtg 784 Query: 232 atggcaagatacacttggttcaatctgggg 261 |||||||||| || |||||| ||||||||| Sbjct: 785 atggcaagattcaattggttaaatctgggg 814
>ref|XM_475681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 51 ctgccaatgccagctcagtggcatcgcatagctgttcataatgagcaccttggtacatat 110 ||||||| |||||||||||||||||| ||||| |||||||||| || || ||| | | | Sbjct: 361 ctgccaaagccagctcagtggcatcggatagccattcataatgaccagctaggtgctttt 420 Query: 111 gctgttcgaaagttggttaagaatgctgcagtctatgttgagggtgatattgagactaga 170 ||||| | ||| |||| |||||| ||||||| |||||||||||||||||||| || ||| Sbjct: 421 gctgtccagaagctggtgaagaattctgcagtttatgttgagggtgatattgaaaccaga 480 Query: 171 gtctacaatga 181 || |||||||| Sbjct: 481 gtatacaatga 491
>dbj|AK073396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045F21, full insert sequence Length = 1107 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 51 ctgccaatgccagctcagtggcatcgcatagctgttcataatgagcaccttggtacatat 110 ||||||| |||||||||||||||||| ||||| |||||||||| || || ||| | | | Sbjct: 605 ctgccaaagccagctcagtggcatcggatagccattcataatgaccagctaggtgctttt 664 Query: 111 gctgttcgaaagttggttaagaatgctgcagtctatgttgagggtgatattgagactaga 170 ||||| | ||| |||| |||||| ||||||| |||||||||||||||||||| || ||| Sbjct: 665 gctgtccagaagctggtgaagaattctgcagtttatgttgagggtgatattgaaaccaga 724 Query: 171 gtctacaatga 181 || |||||||| Sbjct: 725 gtatacaatga 735
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 37 taggtgctgaaaacctgccaatgccagctcagtggcatcgcatagctgttcataatgagc 96 |||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| Sbjct: 17503027 taggtgctgaaaacttgccaatgccagctcagtggcatcgaatatctgttcacaatgagc 17502968 Query: 97 accttggtacatatgctgttc 117 | |||||| ||| ||| |||| Sbjct: 17502967 agcttggtgcatttgccgttc 17502947 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 136 ctgcagtctatgttgagggtgatattgagactagagtctacaatgatgacatcaataatc 195 |||||||||| |||||||||||||||||||| |||||||||||||| || ||| ||| Sbjct: 17502820 ctgcagtctacgttgagggtgatattgagaccagagtctacaatgacagaattaatgatc 17502761 Query: 196 tagtgaaaattgtacctgagatctgtgtgcgg 227 |||||||| | |||| ||||||||||||||| Sbjct: 17502760 aagtgaaaaatataccagagatctgtgtgcgg 17502729
>emb|AL662974.3|OSJN00171 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061G20, complete sequence Length = 191218 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 37 taggtgctgaaaacctgccaatgccagctcagtggcatcgcatagctgttcataatgagc 96 |||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| Sbjct: 161793 taggtgctgaaaacttgccaatgccagctcagtggcatcgaatatctgttcacaatgagc 161734 Query: 97 accttggtacatatgctgttc 117 | |||||| ||| ||| |||| Sbjct: 161733 agcttggtgcatttgccgttc 161713 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 136 ctgcagtctatgttgagggtgatattgagactagagtctacaatgatgacatcaataatc 195 |||||||||| |||||||||||||||||||| |||||||||||||| || ||| ||| Sbjct: 161586 ctgcagtctacgttgagggtgatattgagaccagagtctacaatgacagaattaatgatc 161527 Query: 196 tagtgaaaattgtacctgagatctgtgtgcgg 227 |||||||| | |||| ||||||||||||||| Sbjct: 161526 aagtgaaaaatataccagagatctgtgtgcgg 161495
>dbj|AB242851.1| Quercus mongolica var. crispula DNA, microsatellite marker: bcqm50 Length = 927 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 139 cagtctatgttgagggtgatattgagactagagtctacaatgatgacatcaat 191 |||| ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 202 cagtttatgttgagggggatattgagactagagtttacaatgatagcatcaat 254
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 136 ctgcagtctatgttgagggtgatattgagactagagtctacaatga 181 ||||||| |||||||||||||||||||| || ||||| |||||||| Sbjct: 126516 ctgcagtttatgttgagggtgatattgaaaccagagtatacaatga 126471 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 51 ctgccaatgccagctcagtggcatcgcatagctgttcataatga 94 ||||||| |||||||||||||||||| ||||| |||||||||| Sbjct: 126738 ctgccaaagccagctcagtggcatcggatagccattcataatga 126695
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 136 ctgcagtctatgttgagggtgatattgagactagagtctacaatga 181 ||||||| |||||||||||||||||||| || ||||| |||||||| Sbjct: 318 ctgcagtttatgttgagggtgatattgaaaccagagtatacaatga 273 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 51 ctgccaatgccagctcagtggcatcgcatagctgttcataatga 94 ||||||| |||||||||||||||||| ||||| |||||||||| Sbjct: 540 ctgccaaagccagctcagtggcatcggatagccattcataatga 497
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 136 ctgcagtctatgttgagggtgatattgagactagagtctacaatga 181 ||||||| |||||||||||||||||||| || ||||| |||||||| Sbjct: 25057663 ctgcagtttatgttgagggtgatattgaaaccagagtatacaatga 25057618 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 51 ctgccaatgccagctcagtggcatcgcatagctgttcataatga 94 ||||||| |||||||||||||||||| ||||| |||||||||| Sbjct: 25057885 ctgccaaagccagctcagtggcatcggatagccattcataatga 25057842
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence Length = 125707 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 139 cagtctatgttgagggtgatattgagactagagtctacaatgat 182 |||| |||||||||||||| |||||||||||||| || |||||| Sbjct: 106698 cagtgtatgttgagggtgaaattgagactagagtttataatgat 106741 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 63 gctcagtggcatcgcatagctgttcataatga 94 ||||||||||||||||| ||||| |||||||| Sbjct: 106538 gctcagtggcatcgcattgctgtgcataatga 106569
>gb|AC147963.2| Medicago truncatula chromosome 1 BAC clone mth2-42e19, complete sequence Length = 106951 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 139 cagtctatgttgagggtgatattgagactagagtctacaatgat 182 |||| |||||||||||||| |||||||||||||| || |||||| Sbjct: 96651 cagtgtatgttgagggtgaaattgagactagagtttataatgat 96608 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 63 gctcagtggcatcgcatagctgttcataatga 94 ||||||||||||||||| ||||| |||||||| Sbjct: 96811 gctcagtggcatcgcattgctgtgcataatga 96780
>ref|NM_117176.2| Arabidopsis thaliana single-stranded DNA binding AT4G11060 mRNA, complete cds Length = 1004 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 604 tatgtggaaggtgatattgagactagagtgtataatgat 642
>emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 30 Length = 198136 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 192519 tatgtggaaggtgatattgagactagagtgtataatgat 192481
>emb|AL049876.1|ATT22B4 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project) Length = 108598 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 26916 tatgtggaaggtgatattgagactagagtgtataatgat 26878
>emb|AJ582222.1|ATH582222 Arabidopsis thaliana mRNA for single-stranded DNA binding protein (ssb gene) Length = 652 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 439 tatgtggaaggtgatattgagactagagtgtataatgat 477
>gb|BT005015.1| Arabidopsis thaliana clone U20710 unknown protein (At4g11060) mRNA, complete cds Length = 637 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 439 tatgtggaaggtgatattgagactagagtgtataatgat 477
>gb|BT004166.1| Arabidopsis thaliana clone RAFL15-18-E17 (R20710) unknown protein (At4g11060) mRNA, complete cds Length = 1017 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 604 tatgtggaaggtgatattgagactagagtgtataatgat 642
>gb|AF080120.1|F2P3 Arabidopsis thaliana BAC F2P3 Length = 74406 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 144 tatgttgagggtgatattgagactagagtctacaatgat 182 ||||| || |||||||||||||||||||| || |||||| Sbjct: 66438 tatgtggaaggtgatattgagactagagtgtataatgat 66476
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gttcataatgagcaccttggtacata 109 |||||||||||||| ||||||||||| Sbjct: 1532221 gttcataatgagcagcttggtacata 1532246
>gb|AC151795.1| Ornithorhynchus anatinus chromosome UNK clone OABb-95A1, complete sequence Length = 106226 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gagaggttaggtgctgaaaa 49 |||||||||||||||||||| Sbjct: 78603 gagaggttaggtgctgaaaa 78584
>gb|AC122117.10| Mus musculus chromosome 18, clone RP23-61O22, complete sequence Length = 207024 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tggaagagttaagggagggg 302 |||||||||||||||||||| Sbjct: 95752 tggaagagttaagggagggg 95771
>ref|XM_954708.1| Neurospora crassa OR74A hypothetical protein (NCU02380.1) partial mRNA Length = 2367 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 326 acaatgagcagcaggaggagttggccaa 353 |||| ||||||||||||||| ||||||| Sbjct: 191 acaaggagcagcaggaggagctggccaa 218
>ref|XM_331155.1| Neurospora crassa OR74A hypothetical protein (NCU02380.1) partial mRNA Length = 2367 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 326 acaatgagcagcaggaggagttggccaa 353 |||| ||||||||||||||| ||||||| Sbjct: 191 acaaggagcagcaggaggagctggccaa 218
>gb|AC115051.6| Mus musculus chromosome 1, clone RP24-340A23, complete sequence Length = 158391 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tgaaaacctgccaatgccag 63 |||||||||||||||||||| Sbjct: 4773 tgaaaacctgccaatgccag 4754
>emb|AL596109.6| Human DNA sequence from clone RP11-695D11 on chromosome 1, complete sequence Length = 82965 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gctgaaaacctgccaatgcc 61 |||||||||||||||||||| Sbjct: 16725 gctgaaaacctgccaatgcc 16744
>emb|AL391384.18| Human DNA sequence from clone RP11-555G22 on chromosome 13 Contains the 5' end of the gene for mitotic control protein (DIS3,KIAA1008), the 5' end of the gene for progesterone-induced blocking factor 1 (PIBF1) and a CpG island, complete sequence Length = 155270 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 caagtttgccaaagcacttt 392 |||||||||||||||||||| Sbjct: 100731 caagtttgccaaagcacttt 100712
>emb|AL392003.11| Human DNA sequence from clone RP11-331H2 on chromosome 1 Containt the 3' end of the HSD17B7 gene for hydroxysteroid (17-beta) dehydrogenase 7, a novel protein (MGC48998) and a cytochrome c oxidase subunit VIIb (COX7B) pseudogene, complete sequence Length = 191872 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gtttgccaaagcacttttat 395 |||||||||||||||||||| Sbjct: 23676 gtttgccaaagcacttttat 23657
>gb|AC091941.3| Homo sapiens chromosome 5 clone RP11-334G8, complete sequence Length = 197701 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ctgggggcactgatgtcagc 275 |||||||||||||||||||| Sbjct: 114321 ctgggggcactgatgtcagc 114340
>dbj|AK143537.1| Mus musculus 12 days embryo whole body cDNA, RIKEN full-length enriched library, clone:E970016M14 product:hypothetical Proline-rich region profile containing protein, full insert sequence Length = 4792 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tggaagagttaagggagggg 302 |||||||||||||||||||| Sbjct: 2612 tggaagagttaagggagggg 2593
>dbj|AK147610.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1088M20 product:hypothetical protein, full insert sequence Length = 9711 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tggaagagttaagggagggg 302 |||||||||||||||||||| Sbjct: 7296 tggaagagttaagggagggg 7277
>ref|XM_395007.2| PREDICTED: Apis mellifera similar to hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2 (LOC411536), partial mRNA Length = 11240 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 acaatgatgacatcaataat 194 |||||||||||||||||||| Sbjct: 2008 acaatgatgacatcaataat 2027
>gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287O16, complete sequence Length = 175977 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gctgaaaacctgccaatgcc 61 |||||||||||||||||||| Sbjct: 75254 gctgaaaacctgccaatgcc 75235
>emb|BX901926.19| Zebrafish DNA sequence from clone CH211-195N20 in linkage group 1, complete sequence Length = 204799 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 178 atgatgacatcaataatctagtgaaaat 205 |||||||| ||||||||||||| ||||| Sbjct: 80560 atgatgacttcaataatctagttaaaat 80587
>gb|AF111169.2|AF111169 Homo sapiens chromosome 14 BAC containing gene for KIAA0759 and other possible new transcripts, complete sequence Length = 183916 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 gccagctcagtggcatcgca 78 |||||||||||||||||||| Sbjct: 149471 gccagctcagtggcatcgca 149452
>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence Length = 192734 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tgaaaacctgccaatgccag 63 |||||||||||||||||||| Sbjct: 144011 tgaaaacctgccaatgccag 143992 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,887,071 Number of Sequences: 3902068 Number of extensions: 3887071 Number of successful extensions: 73992 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73861 Number of HSP's gapped (non-prelim): 127 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)