ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AM087613.1| Hordeum vulgare genomic BAC clone C65 139 1e-29
2emb|AM087612.1| Hordeum vulgare ppr gene for putative pentatrico... 139 1e-29
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
5dbj|AK064921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6ref|NM_191109.1| Oryza sativa (japonica cultivar-group), predic... 98 4e-17
7ref|XM_478933.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.50
8gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
11dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
12dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
14gb|AC163013.2| Mus musculus chromosome 8, clone RP24-362N13, com... 42 2.0
15gb|AC124773.4| Mus musculus BAC clone RP23-49B23 from 3, complet... 42 2.0
16gb|AY639025.1| Arachis hypogaea auxin-induced putative ferredoxi... 40 7.8
17ref|XM_511062.1| PREDICTED: Pan troglodytes cirhin (LOC454197), ... 40 7.8
18ref|XM_587444.2| PREDICTED: Bos taurus similar to Cirhin (LOC510... 40 7.8
19ref|XM_858415.1| PREDICTED: Canis familiaris similar to Cirhin, ... 40 7.8
20ref|XM_546858.2| PREDICTED: Canis familiaris similar to Cirhin, ... 40 7.8
21emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chro... 40 7.8
22emb|AL365258.24| Human DNA sequence from clone RP11-448G4 on chr... 40 7.8
23emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chro... 40 7.8
24emb|CR859497.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1739 (from cl... 40 7.8
25dbj|AK074795.1| Homo sapiens cDNA FLJ90314 fis, clone NT2RP20014... 40 7.8
26dbj|AK027675.1| Homo sapiens cDNA FLJ14769 fis, clone NT2RP30041... 40 7.8
27dbj|AK027634.1| Homo sapiens cDNA FLJ14728 fis, clone NT2RP30018... 40 7.8
28gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, com... 40 7.8
29ref|NM_032830.1| Homo sapiens cirrhosis, autosomal recessive 1A ... 40 7.8
30gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502... 40 7.8
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
32ref|NM_001014903.1| Bos taurus x 010 protein (LOC511862), mRNA 40 7.8
33dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
34emb|BX647265.1|HSM807409 Homo sapiens mRNA; cDNA DKFZp686J1577 (... 40 7.8
35gb|BC009348.2| Homo sapiens cirrhosis, autosomal recessive 1A (c... 40 7.8
36gb|AC135002.2| Homo sapiens 3 BAC RP11-151I3 (Roswell Park Cance... 40 7.8
37gb|BT020869.1| Bos taurus x 010 protein (MDS010), mRNA, complete... 40 7.8
38gb|AF025468.2| Caenorhabditis elegans cosmid T27A1, complete seq... 40 7.8
39dbj|AB075868.2| Homo sapiens mRNA for KIAA1988 protein 40 7.8 
>emb|AM087613.1| Hordeum vulgare genomic BAC clone C65
          Length = 2829

 Score =  139 bits (70), Expect = 1e-29
 Identities = 142/166 (85%)
 Strand = Plus / Minus

                                                                       
Query: 345 tgagattgtggtgatcaagaacctaagggtatgcggggactgccactctttcctaaaggc 404
           ||||||||||||||| | |||||| ||||| || |||||||||||||| || || |||  
Sbjct: 952 tgagattgtggtgatgatgaacctgagggtgtgtggggactgccactcgttgctgaagat 893

                                                                       
Query: 405 ggtctctgcaattgccaaccgggcatttcttgtcagggacgcgagccgcttccatcgctt 464
           || ||||||||||||||||||||  ||||| ||||||||  ||||| |||| ||||||||
Sbjct: 892 ggcctctgcaattgccaaccgggtgtttctcgtcagggattcgagctgctttcatcgctt 833

                                                         
Query: 465 cgaaggtggagcatgctcctgcaaagactactggtgaagaatttgg 510
           ||||| |||||||||| ||||| |||| |||||| |||||| ||||
Sbjct: 832 cgaagttggagcatgcccctgccaagattactggcgaagaaattgg 787



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggcgaacatatacacagacacgggacaaccggatggtgtagtgagggtgcgggcgatg 60
            ||||| ||||| ||||| ||||  ||||||| ||||||||| | ||||||||||||||||
Sbjct: 1277 atggctaacatgtacactgacagtggacaacaggatggtgtcgcgagggtgcgggcgatg 1218

                                      
Query: 61   atgaaggagcgcgggctcaagaagga 86
            |||| |||||| ||||| ||||||||
Sbjct: 1217 atgagggagcgtgggctgaagaagga 1192



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 90/110 (81%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                        
Query: 103  gtcgaacacaaggggagggttcatctgtttacggctgacgaccactcacatccgcaggca 162
            |||||||||||| || | | ||||||||| | ||  ||||||||||| ||||| ||||| 
Sbjct: 1186 gtcgaacacaagtggtgagatcatctgttaatggacgacgaccactcgcatccacaggcg 1127

                                                              
Query: 163  aagaggatttacgatctcgtgattaagcttgaacaaatggtgaaggagaa 212
            ||||| ||||| || || |||||| | ||||| || ||||| ||||||||
Sbjct: 1126 aagagaatttatgagct-gtgattgaacttgagcagatggtcaaggagaa 1078
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>emb|AM087612.1| Hordeum vulgare ppr gene for putative pentatricopeptide
           repeat-containing protein
          Length = 2826

 Score =  139 bits (70), Expect = 1e-29
 Identities = 142/166 (85%)
 Strand = Plus / Minus

                                                                       
Query: 345 tgagattgtggtgatcaagaacctaagggtatgcggggactgccactctttcctaaaggc 404
           ||||||||||||||| | |||||| ||||| || |||||||||||||| || || |||  
Sbjct: 952 tgagattgtggtgatgatgaacctgagggtgtgtggggactgccactcgttgctgaagat 893

                                                                       
Query: 405 ggtctctgcaattgccaaccgggcatttcttgtcagggacgcgagccgcttccatcgctt 464
           || ||||||||||||||||||||  ||||| ||||||||  ||||| |||| ||||||||
Sbjct: 892 ggcctctgcaattgccaaccgggtgtttctcgtcagggattcgagctgctttcatcgctt 833

                                                         
Query: 465 cgaaggtggagcatgctcctgcaaagactactggtgaagaatttgg 510
           ||||| |||||||||| ||||| |||| |||||| |||||| ||||
Sbjct: 832 cgaagttggagcatgcccctgccaagattactggcgaagaaattgg 787



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggcgaacatatacacagacacgggacaaccggatggtgtagtgagggtgcgggcgatg 60
            ||||| ||||| ||||| ||||  ||||||| ||||||||| | ||||||||||||||||
Sbjct: 1275 atggctaacatgtacactgacagtggacaacaggatggtgtcgcgagggtgcgggcgatg 1216

                                      
Query: 61   atgaaggagcgcgggctcaagaagga 86
            |||| |||||| ||||| ||||||||
Sbjct: 1215 atgagggagcgtgggctgaagaagga 1190



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 139  gacgaccactcacatccgcaggcaaagaggatttacgatctcgtgattaagcttgaacaa 198
            ||||||||||| ||||| ||||| ||||| ||||| || || |||||| | ||||| || 
Sbjct: 1149 gacgaccactcgcatccacaggcgaagagaatttatgagctggtgattgaacttgagcag 1090

                          
Query: 199  atggtgaaggagaa 212
            ||||| ||||||||
Sbjct: 1089 atggtcaaggagaa 1076
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                            
Query: 430      tttcttgtcagggacgcgagccgcttccatcgcttcgaaggtggagcatgctcctgcaaa 489
                ||||| ||||||||||||||||| ||||||||||||||   ||| || |||||||||| |
Sbjct: 34941753 tttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcaga 34941812

                                       
Query: 490      gactactggtgaagaatttggtg 512
                |||||||||||||||||||||||
Sbjct: 34941813 gactactggtgaagaatttggtg 34941835



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                            
Query: 48       ggtgcgggcgatgatgaaggagcgcgggctcaagaaggagcctgggtgcagctatgtcga 107
                ||||||||||  ||||| |  ||||||||||| ||||||||| ||||| ||||| |||||
Sbjct: 34941374 ggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcga 34941433

                                                                            
Query: 108      acacaaggggagggttcatctgtttacggctgacgaccactcacatccgcaggcaaagag 167
                 |||||||||| ||| || ||||| | ||| ||||||||||| || |||||||| | |||
Sbjct: 34941434 gcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggag 34941493

                                                             
Query: 168      gatttacgatctcgtgattaagcttgaacaaatggtgaaggagaa 212
                ||| ||||| |||||| |  |||| || |  ||||||||||||||
Sbjct: 34941494 gatctacgagctcgtggtcgagctggagcggatggtgaaggagaa 34941538



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 343      agtgagattgtggtgatcaagaacctaagggtatgcggggactgccactc 392
                |||||||| |||||||||||||||||  |||| |||||||||||||||||
Sbjct: 34941666 agtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactc 34941715
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>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1529_G03
          Length = 100635

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                         
Query: 430   tttcttgtcagggacgcgagccgcttccatcgcttcgaaggtggagcatgctcctgcaaa 489
             ||||| ||||||||||||||||| ||||||||||||||   ||| || |||||||||| |
Sbjct: 71117 tttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcaga 71176

                                    
Query: 490   gactactggtgaagaatttggtg 512
             |||||||||||||||||||||||
Sbjct: 71177 gactactggtgaagaatttggtg 71199



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                         
Query: 48    ggtgcgggcgatgatgaaggagcgcgggctcaagaaggagcctgggtgcagctatgtcga 107
             ||||||||||  ||||| |  ||||||||||| ||||||||| ||||| ||||| |||||
Sbjct: 70738 ggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcga 70797

                                                                         
Query: 108   acacaaggggagggttcatctgtttacggctgacgaccactcacatccgcaggcaaagag 167
              |||||||||| ||| || ||||| | ||| ||||||||||| || |||||||| | |||
Sbjct: 70798 gcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggag 70857

                                                          
Query: 168   gatttacgatctcgtgattaagcttgaacaaatggtgaaggagaa 212
             ||| ||||| |||||| |  |||| || |  ||||||||||||||
Sbjct: 70858 gatctacgagctcgtggtcgagctggagcggatggtgaaggagaa 70902



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                               
Query: 343   agtgagattgtggtgatcaagaacctaagggtatgcggggactgccactc 392
             |||||||| |||||||||||||||||  |||| |||||||||||||||||
Sbjct: 71030 agtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactc 71079
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>dbj|AK064921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N08, full
            insert sequence
          Length = 2413

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                        
Query: 430  tttcttgtcagggacgcgagccgcttccatcgcttcgaaggtggagcatgctcctgcaaa 489
            ||||| ||||||||||||||||| ||||||||||||||   ||| || |||||||||| |
Sbjct: 1880 tttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcaga 1939

                                   
Query: 490  gactactggtgaagaatttggtg 512
            |||||||||||||||||||||||
Sbjct: 1940 gactactggtgaagaatttggtg 1962



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggtgcgggcgatgatgaaggagcgcgggctcaagaaggagcctgggtgcagctatgtcga 107
            ||||||||||  ||||| |  ||||||||||| ||||||||| ||||| ||||| |||||
Sbjct: 1501 ggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcga 1560

                                                                        
Query: 108  acacaaggggagggttcatctgtttacggctgacgaccactcacatccgcaggcaaagag 167
             |||||||||| ||| || ||||| | ||| ||||||||||| || |||||||| | |||
Sbjct: 1561 gcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggag 1620

                                                         
Query: 168  gatttacgatctcgtgattaagcttgaacaaatggtgaaggagaa 212
            ||| ||||| |||||| |  |||| || |  ||||||||||||||
Sbjct: 1621 gatctacgagctcgtggtcgagctggagcggatggtgaaggagaa 1665



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                              
Query: 343  agtgagattgtggtgatcaagaacctaagggtatgcggggactgccactc 392
            |||||||| |||||||||||||||||  |||| |||||||||||||||||
Sbjct: 1793 agtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactc 1842
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>ref|NM_191109.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1941

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggtgcgggcgatgatgaaggagcgcgggctcaagaaggagcctgggtgcagctatgtcga 107
            ||||||||||  ||||| |  ||||||||||| ||||||||| ||||| ||||| |||||
Sbjct: 1491 ggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcga 1550

                                                                        
Query: 108  acacaaggggagggttcatctgtttacggctgacgaccactcacatccgcaggcaaagag 167
             |||||||||| ||| || ||||| | ||| ||||||||||| || |||||||| | |||
Sbjct: 1551 gcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggag 1610

                                                         
Query: 168  gatttacgatctcgtgattaagcttgaacaaatggtgaaggagaa 212
            ||| ||||| |||||| |  |||| || |  ||||||||||||||
Sbjct: 1611 gatctacgagctcgtggtcgagctggagcggatggtgaaggagaa 1655



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                        
Query: 430  tttcttgtcagggacgcgagccgcttccatcgcttcgaaggtggagcatgctcctgcaaa 489
            ||||| ||||||||||||||||| ||||||||||||||   ||| || |||||||||| |
Sbjct: 1870 tttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcaga 1929

                        
Query: 490  gactactggtga 501
            ||||||||||||
Sbjct: 1930 gactactggtga 1941



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                              
Query: 343  agtgagattgtggtgatcaagaacctaagggtatgcggggactgccactc 392
            |||||||| |||||||||||||||||  |||| |||||||||||||||||
Sbjct: 1783 agtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactc 1832
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>ref|XM_478933.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2427

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 77   tcaagaaggagcctgggtgcag 98
            ||||||||||||||||||||||
Sbjct: 2009 tcaagaaggagcctgggtgcag 2030
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>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0060K21, complete sequence
          Length = 153973

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 295   cacagtgagaagcttgctgtggcctt 320
             |||||||||||||||||| |||||||
Sbjct: 71437 cacagtgagaagcttgctctggcctt 71462
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 295      cacagtgagaagcttgctgtggcctt 320
                |||||||||||||||||| |||||||
Sbjct: 21189278 cacagtgagaagcttgctctggcctt 21189303
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 77       tcaagaaggagcctgggtgcag 98
                ||||||||||||||||||||||
Sbjct: 23879901 tcaagaaggagcctgggtgcag 23879880
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0005G07
          Length = 142850

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 77    tcaagaaggagcctgggtgcag 98
             ||||||||||||||||||||||
Sbjct: 34828 tcaagaaggagcctgggtgcag 34807
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>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_C01
          Length = 97427

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 77    tcaagaaggagcctgggtgcag 98
             ||||||||||||||||||||||
Sbjct: 68401 tcaagaaggagcctgggtgcag 68380
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 295      cacagtgagaagcttgctgtggcctt 320
                |||||||||||||||||| |||||||
Sbjct: 21499519 cacagtgagaagcttgctctggcctt 21499544
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>gb|AC163013.2| Mus musculus chromosome 8, clone RP24-362N13, complete sequence
          Length = 115582

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   tggtgaaggagaaaacagatg 220
             |||||||||||||||||||||
Sbjct: 69467 tggtgaaggagaaaacagatg 69447
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>gb|AC124773.4| Mus musculus BAC clone RP23-49B23 from 3, complete sequence
          Length = 216860

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 538   cactccagatcttcagtgctg 558
             |||||||||||||||||||||
Sbjct: 93370 cactccagatcttcagtgctg 93350
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>gb|AY639025.1| Arachis hypogaea auxin-induced putative ferredoxin mRNA, partial
           cds
          Length = 225

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 aggtggagcatgctcctgca 487
           ||||||||||||||||||||
Sbjct: 76  aggtggagcatgctcctgca 57
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>ref|XM_511062.1| PREDICTED: Pan troglodytes cirhin (LOC454197), mRNA
          Length = 2086

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 151 aacagatggcactgtggaaa 170
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>ref|XM_587444.2| PREDICTED: Bos taurus similar to Cirhin (LOC510315), mRNA
          Length = 2019

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 186 aacagatggcactgtggaaa 205
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>ref|XM_858415.1| PREDICTED: Canis familiaris similar to Cirhin, transcript variant 3
           (LOC489738), mRNA
          Length = 2123

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 105 aacagatggcactgtggaaa 124
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>ref|XM_546858.2| PREDICTED: Canis familiaris similar to Cirhin, transcript variant 2
           (LOC489738), mRNA
          Length = 2189

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 105 aacagatggcactgtggaaa 124
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>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete
              sequence
          Length = 236130

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    catgctcctgcaaagactac 495
              ||||||||||||||||||||
Sbjct: 172144 catgctcctgcaaagactac 172163
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>emb|AL365258.24| Human DNA sequence from clone RP11-448G4 on chromosome 1 Contains the
             5' end of a novel gene, a eukaryotic translation
             elongation factor 1 alpha (EEF1A) pseudogene, a novel
             pseudogene, a novel gene and a ribosomal protein L24
             (RPL24) pseudogene, complete sequence
          Length = 129343

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 517   ctgttaggagaaggaagatt 536
             ||||||||||||||||||||
Sbjct: 49803 ctgttaggagaaggaagatt 49784
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>emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chromosome 11 Contains
            the 5' end of a novel gene, the Mtmr3 gene for
            myotubularin related protein 3 and a
            glyceraldehyde-3-phosphate dehydrogenase (Gapd)
            pseudogene, complete sequence
          Length = 204413

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  gaagcttgctgtggccttca 322
            ||||||||||||||||||||
Sbjct: 3606 gaagcttgctgtggccttca 3587
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>emb|CR859497.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1739 (from clone DKFZp459B1739)
          Length = 2211

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 153 aacagatggcactgtggaaa 172
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>dbj|AK074795.1| Homo sapiens cDNA FLJ90314 fis, clone NT2RP2001469, weakly similar
           to VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1
          Length = 2206

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 167 aacagatggcactgtggaaa 186
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>dbj|AK027675.1| Homo sapiens cDNA FLJ14769 fis, clone NT2RP3004189, weakly similar
           to VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1
          Length = 2192

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 150 aacagatggcactgtggaaa 169
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>dbj|AK027634.1| Homo sapiens cDNA FLJ14728 fis, clone NT2RP3001857, weakly similar
           to VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1
          Length = 2192

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 153 aacagatggcactgtggaaa 172
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>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence
          Length = 178256

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  aacagatggcactgtggaaa 232
            ||||||||||||||||||||
Sbjct: 6587 aacagatggcactgtggaaa 6568
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>ref|NM_032830.1| Homo sapiens cirrhosis, autosomal recessive 1A (cirhin) (CIRH1A),
           mRNA
          Length = 2192

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 153 aacagatggcactgtggaaa 172
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>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence
          Length = 180835

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aacagatggcactgtggaaa 232
             ||||||||||||||||||||
Sbjct: 91127 aacagatggcactgtggaaa 91108
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     cacagtgagaagcttgctgt 314
               ||||||||||||||||||||
Sbjct: 2814794 cacagtgagaagcttgctgt 2814813
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>ref|NM_001014903.1| Bos taurus x 010 protein (LOC511862), mRNA
          Length = 2480

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  acagtgagaagcttgctgtg 315
            ||||||||||||||||||||
Sbjct: 1307 acagtgagaagcttgctgtg 1326
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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   cacagtgagaagcttgctgt 314
             ||||||||||||||||||||
Sbjct: 83022 cacagtgagaagcttgctgt 83041
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>emb|BX647265.1|HSM807409 Homo sapiens mRNA; cDNA DKFZp686J1577 (from clone DKFZp686J1577)
          Length = 2173

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 115 aacagatggcactgtggaaa 134
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>gb|BC009348.2| Homo sapiens cirrhosis, autosomal recessive 1A (cirhin), mRNA (cDNA
           clone MGC:16757 IMAGE:4131625), complete cds
          Length = 2193

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 133 aacagatggcactgtggaaa 152
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>gb|AC135002.2| Homo sapiens 3 BAC RP11-151I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 88990

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gggacaaccggatggtgtag 43
             ||||||||||||||||||||
Sbjct: 68443 gggacaaccggatggtgtag 68424
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>gb|BT020869.1| Bos taurus x 010 protein (MDS010), mRNA, complete cds
          Length = 2480

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  acagtgagaagcttgctgtg 315
            ||||||||||||||||||||
Sbjct: 1307 acagtgagaagcttgctgtg 1326
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>gb|AF025468.2| Caenorhabditis elegans cosmid T27A1, complete sequence
          Length = 36075

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   ggtctctgcaattgccaacc 424
             ||||||||||||||||||||
Sbjct: 34122 ggtctctgcaattgccaacc 34103
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>dbj|AB075868.2| Homo sapiens mRNA for KIAA1988 protein
          Length = 4183

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacagatggcactgtggaaa 232
           ||||||||||||||||||||
Sbjct: 139 aacagatggcactgtggaaa 158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,800,607
Number of Sequences: 3902068
Number of extensions: 4800607
Number of successful extensions: 88678
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88472
Number of HSP's gapped (non-prelim): 202
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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