ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5h01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H08, full insert sequence Length = 1488 Score = 331 bits (167), Expect = 6e-88 Identities = 227/246 (92%), Gaps = 1/246 (0%) Strand = Plus / Plus Query: 1 aaggccggggcgtacatggtagaacgtggaggtggggaagaaccacaagaacctcatgtt 60 ||||||||||||||||||| ||||||||||||||||||||| | | |||||||| ||||| Sbjct: 451 aaggccggggcgtacatgg-agaacgtggaggtggggaagagcaagaagaacctgatgtt 509 Query: 61 catgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctc 120 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 510 catcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggctc 569 Query: 121 caccaccttccgctccgccacagtcgctgtggtgggcaacaactttctagcccgcgacct 180 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 570 caccaccttccgctccgccacagtcgctgtggtgggcaacaacttcctggcccgcgacct 629 Query: 181 gaccatcgagaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgc 240 ||| ||||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct: 630 gacgatcgagaactcggccggcccgtcgaagcaccaggcggtggcgctgcgcgtgggcgc 689 Query: 241 cgacct 246 |||||| Sbjct: 690 cgacct 695
>gb|AY107840.1| Zea mays PCO070891 mRNA sequence Length = 977 Score = 276 bits (139), Expect = 3e-71 Identities = 211/234 (90%), Gaps = 1/234 (0%) Strand = Plus / Plus Query: 1 aaggccggggcgtacatggtagaacgtggaggtggggaagaaccacaagaacctcatgtt 60 |||||||| |||||||||| ||||||||||||| |||||||| ||| ||||||||||| Sbjct: 211 aaggccggcgcgtacatgg-agaacgtggaggtcgggaagaagcacgtcaacctcatgtt 269 Query: 61 catgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctc 120 | | |||||||| || |||||||| || ||||||||||||| ||||||||||||||||| Sbjct: 270 cgtcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggcta 329 Query: 121 caccaccttccgctccgccacagtcgctgtggtgggcaacaactttctagcccgcgacct 180 ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 330 caccaccttccgctcggccacagtcgctgtggtgggcaacaacttcttggcccgcgacct 389 Query: 181 gaccatcgagaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgt 234 ||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct: 390 gacgatcgagaactcggccgggccgtcgaagcaccaggcggtggcgctccgcgt 443
>ref|NM_183703.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 194 bits (98), Expect = 9e-47 Identities = 135/146 (92%), Gaps = 1/146 (0%) Strand = Plus / Plus Query: 1 aaggccggggcgtacatggtagaacgtggaggtggggaagaaccacaagaacctcatgtt 60 ||||||||||||||||||| ||||||||||||||||||||| | | |||||||| ||||| Sbjct: 919 aaggccggggcgtacatgg-agaacgtggaggtggggaagagcaagaagaacctgatgtt 977 Query: 61 catgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctc 120 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 978 catcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggctc 1037 Query: 121 caccaccttccgctccgccacagtcg 146 |||||||||||||||||||||||||| Sbjct: 1038 caccaccttccgctccgccacagtcg 1063
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 194 bits (98), Expect = 9e-47 Identities = 135/146 (92%), Gaps = 1/146 (0%) Strand = Plus / Plus Query: 1 aaggccggggcgtacatggtagaacgtggaggtggggaagaaccacaagaacctcatgtt 60 ||||||||||||||||||| ||||||||||||||||||||| | | |||||||| ||||| Sbjct: 11725237 aaggccggggcgtacatgg-agaacgtggaggtggggaagagcaagaagaacctgatgtt 11725295 Query: 61 catgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctc 120 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 11725296 catcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggctc 11725355 Query: 121 caccaccttccgctccgccacagtcg 146 |||||||||||||||||||||||||| Sbjct: 11725356 caccaccttccgctccgccacagtcg 11725381 Score = 139 bits (70), Expect = 5e-30 Identities = 93/101 (92%) Strand = Plus / Plus Query: 146 gctgtggtgggcaacaactttctagcccgcgacctgaccatcgagaacgcggccggnccg 205 |||||||||||||||||||| || |||||||||||||| ||||||||| ||||||| ||| Sbjct: 11732671 gctgtggtgggcaacaacttcctggcccgcgacctgacgatcgagaactcggccggcccg 11732730 Query: 206 tccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 || |||||||||||||||||||| ||||| ||||||||||| Sbjct: 11732731 tcgaagcaccaggcggtggcgctgcgcgtgggcgccgacct 11732771 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Minus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| Sbjct: 11699083 gaacacggccgggccggcgaagcaccaggcggtggcgctccggtgcggcgccgacct 11699027 Score = 50.1 bits (25), Expect = 0.003 Identities = 64/77 (83%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctccacc 124 |||||||| |||| | ||||||| |||| | ||||| |||||| |||||||||||||| Sbjct: 33447614 ggcgacggcatggaccagacggtcatcaccggcagccgcaacgtggtcgacggctccaca 33447673 Query: 125 accttccgctccgccac 141 || ||| ||||||||| Sbjct: 33447674 actttcaactccgccac 33447690 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 gcaccaggcggtggcgctccgcgtcg 236 |||||||||||||||||| ||||||| Sbjct: 8447376 gcaccaggcggtggcgctgcgcgtcg 8447351 Score = 42.1 bits (21), Expect = 0.82 Identities = 33/37 (89%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgctccgcgtcggcgccgacc 245 ||||| ||||||||||| |||||||| ||||||||| Sbjct: 33452544 aagcagcaggcggtggccctccgcgtgagcgccgacc 33452580
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 194 bits (98), Expect = 9e-47 Identities = 135/146 (92%), Gaps = 1/146 (0%) Strand = Plus / Plus Query: 1 aaggccggggcgtacatggtagaacgtggaggtggggaagaaccacaagaacctcatgtt 60 ||||||||||||||||||| ||||||||||||||||||||| | | |||||||| ||||| Sbjct: 64405 aaggccggggcgtacatgg-agaacgtggaggtggggaagagcaagaagaacctgatgtt 64463 Query: 61 catgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctc 120 ||| |||||||| || |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 64464 catcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggctc 64523 Query: 121 caccaccttccgctccgccacagtcg 146 |||||||||||||||||||||||||| Sbjct: 64524 caccaccttccgctccgccacagtcg 64549 Score = 139 bits (70), Expect = 5e-30 Identities = 93/101 (92%) Strand = Plus / Plus Query: 146 gctgtggtgggcaacaactttctagcccgcgacctgaccatcgagaacgcggccggnccg 205 |||||||||||||||||||| || |||||||||||||| ||||||||| ||||||| ||| Sbjct: 71839 gctgtggtgggcaacaacttcctggcccgcgacctgacgatcgagaactcggccggcccg 71898 Query: 206 tccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 || |||||||||||||||||||| ||||| ||||||||||| Sbjct: 71899 tcgaagcaccaggcggtggcgctgcgcgtgggcgccgacct 71939 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Minus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| Sbjct: 38251 gaacacggccgggccggcgaagcaccaggcggtggcgctccggtgcggcgccgacct 38195
>ref|NM_183704.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 888 Score = 141 bits (71), Expect = 1e-30 Identities = 94/102 (92%) Strand = Plus / Plus Query: 145 cgctgtggtgggcaacaactttctagcccgcgacctgaccatcgagaacgcggccggncc 204 ||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||| || Sbjct: 195 cgctgtggtgggcaacaacttcctggcccgcgacctgacgatcgagaactcggccggccc 254 Query: 205 gtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 ||| |||||||||||||||||||| ||||| ||||||||||| Sbjct: 255 gtcgaagcaccaggcggtggcgctgcgcgtgggcgccgacct 296
>gb|AY165036.1| Lolium perenne methyl pectinesterase mRNA, partial cds Length = 970 Score = 123 bits (62), Expect = 3e-25 Identities = 73/77 (94%) Strand = Plus / Plus Query: 170 gcccgcgacctgaccatcgagaacgcggccggnccgtccaagcaccaggcggtggcgctc 229 |||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| Sbjct: 14 gcccgcgatctgaccatcgagaactcggccggcccgtcgaagcaccaggcggtggcgctc 73 Query: 230 cgcgtcggcgccgacct 246 ||||||||||||||||| Sbjct: 74 cgcgtcggcgccgacct 90
>ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2035 Score = 95.6 bits (48), Expect = 6e-17 Identities = 143/175 (81%) Strand = Plus / Plus Query: 54 tcatgttcatgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcg 113 |||||||| | |||||||| | | | ||||| || ||||||||||||| ||||||||||| Sbjct: 1024 tcatgttcgtcggcgacggcacgtggaagaccgtcatcaaggccagccgcaacgtcgtcg 1083 Query: 114 acggctccaccaccttccgctccgccacagtcgctgtggtgggcaacaactttctagccc 173 || |||||||||||||||||| ||||| |||| |||||||||| ||||| || | Sbjct: 1084 acaactccaccaccttccgctctgccacgctcgccgtggtgggcacggggtttctggcgc 1143 Query: 174 gcgacctgaccatcgagaacgcggccggnccgtccaagcaccaggcggtggcgct 228 | ||| | || | ||||||||||| || ||| ||||||||||||||||||||| Sbjct: 1144 gggacataacggtggagaacgcggcggggccgagcaagcaccaggcggtggcgct 1198
>dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F02, full insert sequence Length = 2035 Score = 95.6 bits (48), Expect = 6e-17 Identities = 143/175 (81%) Strand = Plus / Plus Query: 54 tcatgttcatgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcg 113 |||||||| | |||||||| | | | ||||| || ||||||||||||| ||||||||||| Sbjct: 1024 tcatgttcgtcggcgacggcacgtggaagaccgtcatcaaggccagccgcaacgtcgtcg 1083 Query: 114 acggctccaccaccttccgctccgccacagtcgctgtggtgggcaacaactttctagccc 173 || |||||||||||||||||| ||||| |||| |||||||||| ||||| || | Sbjct: 1084 acaactccaccaccttccgctctgccacgctcgccgtggtgggcacggggtttctggcgc 1143 Query: 174 gcgacctgaccatcgagaacgcggccggnccgtccaagcaccaggcggtggcgct 228 | ||| | || | ||||||||||| || ||| ||||||||||||||||||||| Sbjct: 1144 gggacataacggtggagaacgcggcggggccgagcaagcaccaggcggtggcgct 1198
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 4e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 54 tcatgttcatgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcg 113 |||||||| | |||||||| | | | ||||| || ||||||||||||| ||||||||||| Sbjct: 28508357 tcatgttcgtcggcgacggcacgtggaagaccgtcatcaaggccagccgcaacgtcgtcg 28508298 Query: 114 acggctccaccaccttccgctccgccac 141 || |||||||||||||||||| ||||| Sbjct: 28508297 acaactccaccaccttccgctctgccac 28508270 Score = 52.0 bits (26), Expect = 8e-04 Identities = 37/41 (90%) Strand = Plus / Minus Query: 188 gagaacgcggccggnccgtccaagcaccaggcggtggcgct 228 ||||||||||| || ||| ||||||||||||||||||||| Sbjct: 28506385 gagaacgcggcggggccgagcaagcaccaggcggtggcgct 28506345
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0037D09 Length = 140470 Score = 79.8 bits (40), Expect = 4e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 54 tcatgttcatgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcg 113 |||||||| | |||||||| | | | ||||| || ||||||||||||| ||||||||||| Sbjct: 74109 tcatgttcgtcggcgacggcacgtggaagaccgtcatcaaggccagccgcaacgtcgtcg 74050 Query: 114 acggctccaccaccttccgctccgccac 141 || |||||||||||||||||| ||||| Sbjct: 74049 acaactccaccaccttccgctctgccac 74022 Score = 52.0 bits (26), Expect = 8e-04 Identities = 37/41 (90%) Strand = Plus / Minus Query: 188 gagaacgcggccggnccgtccaagcaccaggcggtggcgct 228 ||||||||||| || ||| ||||||||||||||||||||| Sbjct: 72137 gagaacgcggcggggccgagcaagcaccaggcggtggcgct 72097
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0618H09 Length = 142306 Score = 79.8 bits (40), Expect = 4e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 54 tcatgttcatgggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcg 113 |||||||| | |||||||| | | | ||||| || ||||||||||||| ||||||||||| Sbjct: 65898 tcatgttcgtcggcgacggcacgtggaagaccgtcatcaaggccagccgcaacgtcgtcg 65839 Query: 114 acggctccaccaccttccgctccgccac 141 || |||||||||||||||||| ||||| Sbjct: 65838 acaactccaccaccttccgctctgccac 65811 Score = 52.0 bits (26), Expect = 8e-04 Identities = 37/41 (90%) Strand = Plus / Minus Query: 188 gagaacgcggccggnccgtccaagcaccaggcggtggcgct 228 ||||||||||| || ||| ||||||||||||||||||||| Sbjct: 63926 gagaacgcggcggggccgagcaagcaccaggcggtggcgct 63886
>ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1923 Score = 61.9 bits (31), Expect = 9e-07 Identities = 42/46 (91%) Strand = Plus / Plus Query: 186 tcgagaacgcggccggnccgtccaagcaccaggcggtggcgctccg 231 |||||||| |||| || ||||| ||||||||||||||||||||||| Sbjct: 1047 tcgagaacacggcggggccgtcgaagcaccaggcggtggcgctccg 1092 Score = 61.9 bits (31), Expect = 9e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 109 cgtcgacggctccaccaccttccgctccgccacagtcgctgtg 151 ||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 970 cgtcgacggctacaccaccttccgcagcgccacagtcgctgtg 1012
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 9e-07 Identities = 42/46 (91%) Strand = Plus / Plus Query: 186 tcgagaacgcggccggnccgtccaagcaccaggcggtggcgctccg 231 |||||||| |||| || ||||| ||||||||||||||||||||||| Sbjct: 21973439 tcgagaacacggcggggccgtcgaagcaccaggcggtggcgctccg 21973484 Score = 52.0 bits (26), Expect = 8e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 109 cgtcgacggctccaccaccttccgctccgccacagtcg 146 ||||||||||| ||||||||||||| ||||||||||| Sbjct: 21971796 cgtcgacggctacaccaccttccgcagcgccacagtcg 21971833 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 21975162 aagcaccaggcggtggcgct 21975143
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_H01 Length = 128124 Score = 61.9 bits (31), Expect = 9e-07 Identities = 42/46 (91%) Strand = Plus / Plus Query: 186 tcgagaacgcggccggnccgtccaagcaccaggcggtggcgctccg 231 |||||||| |||| || ||||| ||||||||||||||||||||||| Sbjct: 59188 tcgagaacacggcggggccgtcgaagcaccaggcggtggcgctccg 59233 Score = 52.0 bits (26), Expect = 8e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 109 cgtcgacggctccaccaccttccgctccgccacagtcg 146 ||||||||||| ||||||||||||| ||||||||||| Sbjct: 57545 cgtcgacggctacaccaccttccgcagcgccacagtcg 57582 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 60911 aagcaccaggcggtggcgct 60892
>dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full insert sequence Length = 1923 Score = 61.9 bits (31), Expect = 9e-07 Identities = 42/46 (91%) Strand = Plus / Plus Query: 186 tcgagaacgcggccggnccgtccaagcaccaggcggtggcgctccg 231 |||||||| |||| || ||||| ||||||||||||||||||||||| Sbjct: 1047 tcgagaacacggcggggccgtcgaagcaccaggcggtggcgctccg 1092 Score = 61.9 bits (31), Expect = 9e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 109 cgtcgacggctccaccaccttccgctccgccacagtcgctgtg 151 ||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 970 cgtcgacggctacaccaccttccgcagcgccacagtcgctgtg 1012
>ref|XM_475113.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1701 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| |||| || ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 1071 gaacacggcggggccgtcgaagcaccaggcggtggcgctccggtccggcgccgacct 1127
>ref|NM_183700.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1674 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| Sbjct: 1020 gaacacggccgggccggcgaagcaccaggcggtggcgctccggtgcggcgccgacct 1076
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| |||| || ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 39153 gaacacggcggggccgtcgaagcaccaggcggtggcgctccggtccggcgccgacct 39209
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| |||| || ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 88385 gaacacggcggggccgtcgaagcaccaggcggtggcgctccggtccggcgccgacct 88441
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| |||| || ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 17095018 gaacacggcggggccgtcgaagcaccaggcggtggcgctccggtccggcgccgacct 17095074
>dbj|AK107006.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D07, full insert sequence Length = 2087 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| Sbjct: 1151 gaacacggccgggccggcgaagcaccaggcggtggcgctccggtgcggcgccgacct 1207
>dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138H21, full insert sequence Length = 1963 Score = 60.0 bits (30), Expect = 3e-06 Identities = 50/57 (87%) Strand = Plus / Plus Query: 190 gaacgcggccggnccgtccaagcaccaggcggtggcgctccgcgtcggcgccgacct 246 |||| |||| || ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 1135 gaacacggcggggccgtcgaagcaccaggcggtggcgctccggtccggcgccgacct 1191
>ref|XM_468128.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1775 Score = 56.0 bits (28), Expect = 5e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 214 ccaggcggtggcgctccgcgtcggcgccgacctctc 249 ||||||||||||||| |||||||||| ||||||||| Sbjct: 1147 ccaggcggtggcgctgcgcgtcggcggcgacctctc 1182
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 5e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 214 ccaggcggtggcgctccgcgtcggcgccgacctctc 249 ||||||||||||||| |||||||||| ||||||||| Sbjct: 33240499 ccaggcggtggcgctgcgcgtcggcggcgacctctc 33240464 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Minus Query: 211 gcaccaggcggtggcgctccgcgtcggcgccgacc 245 |||||||||||||||||| ||||| ||||||||| Sbjct: 10863896 gcaccaggcggtggcgctgcgcgtgagcgccgacc 10863862 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gctccaccaccttccgctcc 136 |||||||||||||||||||| Sbjct: 3204298 gctccaccaccttccgctcc 3204279
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_D08 Length = 163702 Score = 56.0 bits (28), Expect = 5e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 214 ccaggcggtggcgctccgcgtcggcgccgacctctc 249 ||||||||||||||| |||||||||| ||||||||| Sbjct: 69808 ccaggcggtggcgctgcgcgtcggcggcgacctctc 69773
>dbj|AK105110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F08, full insert sequence Length = 1775 Score = 56.0 bits (28), Expect = 5e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 214 ccaggcggtggcgctccgcgtcggcgccgacctctc 249 ||||||||||||||| |||||||||| ||||||||| Sbjct: 1147 ccaggcggtggcgctgcgcgtcggcggcgacctctc 1182
>ref|NM_190847.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1692 Score = 50.1 bits (25), Expect = 0.003 Identities = 64/77 (83%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctccacc 124 |||||||| |||| | ||||||| |||| | ||||| |||||| |||||||||||||| Sbjct: 916 ggcgacggcatggaccagacggtcatcaccggcagccgcaacgtggtcgacggctccaca 975 Query: 125 accttccgctccgccac 141 || ||| ||||||||| Sbjct: 976 actttcaactccgccac 992 Score = 42.1 bits (21), Expect = 0.82 Identities = 33/37 (89%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgctccgcgtcggcgccgacc 245 ||||| ||||||||||| |||||||| ||||||||| Sbjct: 1060 aagcagcaggcggtggccctccgcgtgagcgccgacc 1096
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 50.1 bits (25), Expect = 0.003 Identities = 64/77 (83%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctccacc 124 |||||||| |||| | ||||||| |||| | ||||| |||||| |||||||||||||| Sbjct: 123780 ggcgacggcatggaccagacggtcatcaccggcagccgcaacgtggtcgacggctccaca 123839 Query: 125 accttccgctccgccac 141 || ||| ||||||||| Sbjct: 123840 actttcaactccgccac 123856 Score = 42.1 bits (21), Expect = 0.82 Identities = 33/37 (89%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgctccgcgtcggcgccgacc 245 ||||| ||||||||||| |||||||| ||||||||| Sbjct: 128710 aagcagcaggcggtggccctccgcgtgagcgccgacc 128746
>dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N03, full insert sequence Length = 1849 Score = 50.1 bits (25), Expect = 0.003 Identities = 64/77 (83%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctccacc 124 |||||||| |||| | ||||||| |||| | ||||| |||||| |||||||||||||| Sbjct: 922 ggcgacggcatggaccagacggtcatcaccggcagccgcaacgtggtcgacggctccaca 981 Query: 125 accttccgctccgccac 141 || ||| ||||||||| Sbjct: 982 actttcaactccgccac 998 Score = 42.1 bits (21), Expect = 0.82 Identities = 33/37 (89%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgctccgcgtcggcgccgacc 245 ||||| ||||||||||| |||||||| ||||||||| Sbjct: 1066 aagcagcaggcggtggccctccgcgtgagcgccgacc 1102
>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060B06, complete sequence Length = 162568 Score = 48.1 bits (24), Expect = 0.013 Identities = 27/28 (96%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatca 92 ||||||||| |||||||||||||||||| Sbjct: 24438 ggcgacggagtgggcaagacggtgatca 24465
>gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1111_B01, complete sequence Length = 136068 Score = 48.1 bits (24), Expect = 0.013 Identities = 27/28 (96%) Strand = Plus / Minus Query: 65 ggcgacggaatgggcaagacggtgatca 92 ||||||||| |||||||||||||||||| Sbjct: 9595 ggcgacggagtgggcaagacggtgatca 9568
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.013 Identities = 27/28 (96%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatca 92 ||||||||| |||||||||||||||||| Sbjct: 20481644 ggcgacggagtgggcaagacggtgatca 20481671
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.013 Identities = 27/28 (96%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatca 92 ||||||||| |||||||||||||||||| Sbjct: 20791879 ggcgacggagtgggcaagacggtgatca 20791906
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Plus Query: 172 ccgcgacctgaccatcgagaacg 194 ||||||||||||||||||||||| Sbjct: 2308097 ccgcgacctgaccatcgagaacg 2308119
>ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Plus Query: 211 gcaccaggcggtggcgctccgcgtcggcgccgacc 245 |||||||||||||||||| ||||| ||||||||| Sbjct: 1068 gcaccaggcggtggcgctgcgcgtgagcgccgacc 1102
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Minus Query: 212 caccaggcggtggcgctccgcgt 234 ||||||||||||||||||||||| Sbjct: 10537637 caccaggcggtggcgctccgcgt 10537615
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Minus Query: 212 caccaggcggtggcgctccgcgt 234 ||||||||||||||||||||||| Sbjct: 93450 caccaggcggtggcgctccgcgt 93428
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Minus Query: 212 caccaggcggtggcgctccgcgt 234 ||||||||||||||||||||||| Sbjct: 10535738 caccaggcggtggcgctccgcgt 10535716
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Minus Query: 211 gcaccaggcggtggcgctccgcgtcggcgccgacc 245 |||||||||||||||||| ||||| ||||||||| Sbjct: 70095 gcaccaggcggtggcgctgcgcgtgagcgccgacc 70061
>dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H06, full insert sequence Length = 1797 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Plus Query: 211 gcaccaggcggtggcgctccgcgtcggcgccgacc 245 |||||||||||||||||| ||||| ||||||||| Sbjct: 1068 gcaccaggcggtggcgctgcgcgtgagcgccgacc 1102
>dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full insert sequence Length = 2099 Score = 46.1 bits (23), Expect = 0.052 Identities = 23/23 (100%) Strand = Plus / Plus Query: 212 caccaggcggtggcgctccgcgt 234 ||||||||||||||||||||||| Sbjct: 1157 caccaggcggtggcgctccgcgt 1179
>ref|NM_187890.1| Oryza sativa (japonica cultivar-group), Ozsa8332 predicted mRNA Length = 1836 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 211 gcaccaggcggtggcgctccgcgtcg 236 |||||||||||||||||| ||||||| Sbjct: 1221 gcaccaggcggtggcgctgcgcgtcg 1246
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 gcaccaggcggtggcgctccgcgtcg 236 |||||||||||||||||| ||||||| Sbjct: 22529 gcaccaggcggtggcgctgcgcgtcg 22504
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Plus Query: 112 cgacggctccaccaccttccgctccgccac 141 |||||||| |||||||||||||||||||| Sbjct: 4712397 cgacggctggaccaccttccgctccgccac 4712426
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 gcaccaggcggtggcgctccgcgtcg 236 |||||||||||||||||| ||||||| Sbjct: 62331 gcaccaggcggtggcgctgcgcgtcg 62306
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Plus Query: 112 cgacggctccaccaccttccgctccgccac 141 |||||||| |||||||||||||||||||| Sbjct: 74996 cgacggctggaccaccttccgctccgccac 75025
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ggcgctccgcgtcggcgccga 243 ||||||||||||||||||||| Sbjct: 2103721 ggcgctccgcgtcggcgccga 2103701
>emb|Y13285.1|ZMY13285 Zea Mays mRNA for pectin methylesterase-like protein Length = 1901 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 gcaccaggcggtggcgctccg 231 ||||||||||||||||||||| Sbjct: 1068 gcaccaggcggtggcgctccg 1088
>dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full insert sequence Length = 1859 Score = 42.1 bits (21), Expect = 0.82 Identities = 33/37 (89%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgctccgcgtcggcgccgacc 245 ||||| ||||||||||| |||||||| ||||||||| Sbjct: 1066 aagcagcaggcggtggccctccgcgtgagcgccgacc 1102 Score = 42.1 bits (21), Expect = 0.82 Identities = 63/77 (81%) Strand = Plus / Plus Query: 65 ggcgacggaatgggcaagacggtgatcaaggccagcctcaacgtcgtcgacggctccacc 124 |||||||| |||| | ||||||| |||| | ||||| ||| || |||||||||||||| Sbjct: 922 ggcgacggcatggaccagacggtcatcaccggcagccgcaaggtggtcgacggctccaca 981 Query: 125 accttccgctccgccac 141 || ||| ||||||||| Sbjct: 982 actttcaactccgccac 998
>gb|AY109517.1| Zea mays CL1790_1 mRNA sequence Length = 1903 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 gcaccaggcggtggcgctccg 231 ||||||||||||||||||||| Sbjct: 1068 gcaccaggcggtggcgctccg 1088
>dbj|AB107252.1| Pisum sativum Pspme2 mRNA for pectin methylesterase, complete cds Length = 1912 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgctccgcgtcgg 237 |||||||||||||| || ||||||||||| Sbjct: 1064 aagcaccaggcggtagctctccgcgtcgg 1092
>ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2268 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 1476 aagcaccaggcggtggcgct 1495
>emb|AL121959.15|HSDJ78N10 Human DNA sequence from clone RP1-78N10 on chromosome 6q22.33-23.3 Contains the 5' end of the EYA4 gene for eyes absent homolog 4 (Drosophila) (Deafness, autosomal nonsyndromic sensorineural, 10 (DFNA10)) and a novel gene. Contains a CpG island, complete sequence Length = 136377 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gtggaggtggggaagaacca 45 |||||||||||||||||||| Sbjct: 42248 gtggaggtggggaagaacca 42229
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 caccaccttccgctccgcca 140 |||||||||||||||||||| Sbjct: 1381429 caccaccttccgctccgcca 1381448
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 15867971 aagcaccaggcggtggcgct 15867952
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 31097 aagcaccaggcggtggcgct 31078
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gctccaccaccttccgctcc 136 |||||||||||||||||||| Sbjct: 76485 gctccaccaccttccgctcc 76466
>dbj|AK108324.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H05, full insert sequence Length = 1476 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gctccaccaccttccgctcc 136 |||||||||||||||||||| Sbjct: 215 gctccaccaccttccgctcc 196
>dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O18, full insert sequence Length = 2268 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 1476 aagcaccaggcggtggcgct 1495
>ref|NM_212208.1| Eremothecium gossypii AFR525Cp (AFR525C), mRNA Length = 1194 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 caccaccttccgctccgcca 140 |||||||||||||||||||| Sbjct: 111 caccaccttccgctccgcca 92
>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full insert sequence Length = 2346 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aagcaccaggcggtggcgct 228 |||||||||||||||||||| Sbjct: 1355 aagcaccaggcggtggcgct 1374 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,671,315 Number of Sequences: 3902068 Number of extensions: 1671315 Number of successful extensions: 33629 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33221 Number of HSP's gapped (non-prelim): 404 length of query: 250 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 228 effective length of database: 17,147,199,772 effective search space: 3909561548016 effective search space used: 3909561548016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
