ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5f06 |
|---|---|
| Clone Library Name | barley_pub |
>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -2 Query: 201 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 43 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 31.2 bits (69), Expect = 1.8 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 11/109 (10%) Frame = -2 Query: 339 SNIGV--------LQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRS 184 SN+GV L +RR V+ T +W+ PLP + + S Sbjct: 373 SNVGVNGASPQERLMAARRAVV------TMQWNTHLGRRGRSFAPLPTGGMSIATSAASS 426 Query: 183 AADLCYTDRSAAASSNPSRMSG---TFPVCRRSQGELPHLPAQRGGPDE 46 + + S SN + S + PV ++ E PH+P GGP + Sbjct: 427 STSSASSSSSMNDGSNAKKTSDAAVSLPVGQQPAAEQPHVPTAPGGPSQ 475
>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -2 Query: 201 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 43 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 30.0 bits (66), Expect = 4.1 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -2 Query: 201 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 43 LKSVR+A L + S +P R+S V QG +P A +R G DEA Sbjct: 17 LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 281 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 111 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 281 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 111 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 281 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 111 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 281 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 111 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 293 Score = 29.3 bits (64), Expect = 7.0 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 63 AAPGDGEAHLVIADTPETSLTSCLGCSKL 149 A PGDG AH + ADT L + L KL Sbjct: 177 ATPGDGRAHNINADTVAGELAAALEAEKL 205
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.9 bits (63), Expect = 9.1 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -3 Query: 272 NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 111 NG G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 28.9 bits (63), Expect = 9.1 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = -2 Query: 321 QQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLCYTDRSAAAS 142 ++SR + S H R W + DQD S ST S+ S +D + RS A S Sbjct: 483 RRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSY---RSKSHSRSDSRGSSRSRAVS 539 Query: 141 SNPSR 127 + SR Sbjct: 540 KSSSR 544
>ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) (Mannosyltransferase- Length = 464 Score = 28.9 bits (63), Expect = 9.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 287 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDP 153 +TV + K PLD +H LF+ + S +PF R + P DP Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGSMHSPF---RARSEPEDP 253
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 28.9 bits (63), Expect = 9.1 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = -2 Query: 198 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 76 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 28.9 bits (63), Expect = 9.1 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = -2 Query: 198 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 76 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,943,167 Number of Sequences: 219361 Number of extensions: 1576218 Number of successful extensions: 4238 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4237 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
