Clone Information

BLAST Search Result

Clone Name	bags5f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ139268.1\| Triticum aestivum geranylgeranyl hydrogenase mRNA...	430	e-117
2	gb\|AY104414.1\| Zea mays PCO077228 mRNA sequence	131	3e-27
3	ref\|XM_467759.1\| Oryza sativa (japonica cultivar-group), mRNA	100	9e-18
4	ref\|XM_506969.1\| PREDICTED Oryza sativa (japonica cultivar-group...	100	9e-18
5	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	9e-18
6	dbj\|AP005297.3\| Oryza sativa (japonica cultivar-group) genomic D...	100	9e-18
7	dbj\|AP004114.3\| Oryza sativa (japonica cultivar-group) genomic D...	100	9e-18
8	dbj\|AK098873.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	9e-18
9	dbj\|AK061968.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	9e-18
10	emb\|AL359834.18\| Human DNA sequence from clone RP11-121P12 on ch...	46	0.12
11	gb\|AC154635.2\| Mus musculus BAC clone RP23-299N21 from 13, compl...	44	0.46
12	gb\|AC165242.6\| Mus musculus chromosome 3, clone RP24-98F15, comp...	42	1.8
13	gb\|AC115014.6\| Mus musculus chromosome 3, clone RP24-196G4, comp...	42	1.8
14	ref\|XM_521035.1\| PREDICTED: Pan troglodytes similar to PCTAIRE p...	40	7.2
15	gb\|AC099707.14\| Mus musculus chromosome 1, clone RP23-329C7, com...	40	7.2
16	ref\|NM_006201.3\| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), ...	40	7.2
17	ref\|NM_033018.2\| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), ...	40	7.2
18	ref\|XM_472947.1\| Oryza sativa (japonica cultivar-group), predic...	40	7.2
19	gb\|BC006190.2\| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA...	40	7.2
20	gb\|AC134460.4\| Mus musculus BAC clone RP23-373D18 from chromosom...	40	7.2
21	gb\|BC001048.2\| Homo sapiens PCTAIRE protein kinase 1, transcript...	40	7.2
22	gb\|BC015607.2\| Homo sapiens PCTAIRE protein kinase 1, transcript...	40	7.2
23	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	7.2
24	ref\|XM_386685.1\| Gibberella zeae PH-1 chromosome 4 hypothetical ...	40	7.2
25	gb\|BC009852.2\| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA...	40	7.2
26	ref\|XM_546338.2\| PREDICTED: Canis familiaris similar to F-box on...	40	7.2
27	emb\|AL137140.12\| Human DNA sequence from clone RP11-137M6 on chr...	40	7.2
28	emb\|AL096791.13\|HSJ659F15 Human DNA sequence from clone RP4-659F...	40	7.2
29	emb\|X66363.1\|HSSTHPKD H.sapiens mRNA PCTAIRE-1 for serine/threon...	40	7.2
30	emb\|AL606998.3\|OSJN00125 Oryza sativa genomic DNA, chromosome 4,...	40	7.2
31	gb\|BT007518.1\| Synthetic construct Homo sapiens PCTAIRE protein ...	40	7.2
32	emb\|CR383668.12\| Zebrafish DNA sequence from clone DKEY-199M13 i...	40	7.2
33	gb\|BT006827.1\| Homo sapiens PCTAIRE protein kinase 1 mRNA, compl...	40	7.2
34	gb\|AC175467.3\| Pan troglodytes BAC clone CH251-302C22 from chrom...	40	7.2
35	gb\|AC183302.2\| Pan troglodytes BAC clone CH251-258O5 from chromo...	40	7.2
36	dbj\|AK131486.1\| Homo sapiens cDNA FLJ16665 fis, clone THYMU20312...	40	7.2
37	emb\|CR620813.1\| full-length cDNA clone CS0DC008YH12 of Neuroblas...	40	7.2
38	ref\|NM_141571.2\| Drosophila melanogaster CG8223-RA (CG8223), mRNA	40	7.2
39	gb\|AY069666.1\| Drosophila melanogaster LD44305 full length cDNA	40	7.2
40	emb\|BX119930.5\| Zebrafish DNA sequence from clone DKEY-18G4 in l...	40	7.2
41	gb\|AC009512.6\| Drosophila melanogaster, chromosome 3R, region 85...	40	7.2
42	gb\|AY335624.1\| Synthetic construct Homo sapiens PCTAIRE protein ...	40	7.2
43	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.2
44	gb\|AC008314.7\|AC008314 Drosophila melanogaster, chromosome 3R, r...	40	7.2
45	gb\|AE004613.1\| Pseudomonas aeruginosa PAO1, section 174 of 529 o...	40	7.2
46	emb\|AJ535489.3\|OSA535489 Oryza sativa (indica cultivar-group) mR...	40	7.2
47	gb\|AY891941.1\| Synthetic construct Homo sapiens clone FLH013086....	40	7.2
48	gb\|AY891940.1\| Synthetic construct Homo sapiens clone FLH013085....	40	7.2
49	gb\|AY889470.1\| Synthetic construct Homo sapiens clone FLH013089....	40	7.2
50	emb\|BX004869.13\| Zebrafish DNA sequence from clone CH211-69E21 i...	40	7.2
51	dbj\|AK103296.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.2
52	emb\|AL627350.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	7.2
53	gb\|AE003680.4\| Drosophila melanogaster chromosome 3R, section 18...	40	7.2
54	emb\|CR394552.9\| Zebrafish DNA sequence from clone DKEYP-109B10 i...	40	7.2
55	emb\|CR628371.8\| Zebrafish DNA sequence from clone CH211-250J16 i...	40	7.2
56	gb\|AC153533.4\| Mus musculus 10 BAC RP23-474K10 (Roswell Park Can...	40	7.2
57	gb\|AF055296.1\|AF055296 Zantedeschia aethiopica geranylgeranyl re...	40	7.2
58	dbj\|AB209465.1\| Homo sapiens premature mRNA for Hypothetical pro...	40	7.2

>gb|DQ139268.1| Triticum aestivum geranylgeranyl hydrogenase mRNA, complete cds
          Length = 1704

 Score =  430 bits (217), Expect = e-117
 Identities = 265/279 (94%), Gaps = 4/279 (1%)
 Strand = Plus / Plus

                                                                        
Query: 2    ccccatcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccg 61
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 ccccatcgaggacatcaag-ctcgccgtcaacaccatcggcagcctcgtcagggccaccg 1450

                                                                        
Query: 62   cgctgcgccgggagatggggaagctcaccttgtgatcgccgacacaccggaaacgtccct 121
            ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 1451 cgctgcgccgggagatggggaagctcaccttgtgatcgccgacccgccggaaacgttcct 1510

                                                                        
Query: 122  gacatcctgcttgggttgctcgaagctgcggcggatcgatcggtatagcagagatccgcg 181
            |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1511 gacagcctgcttgggtcgctcgaagctgcggcggatcggtcggtatagcagagatccgcg 1570

                                                                        
Query: 182  gccgatcgaacggatttgaggcagaggagatgagaataaagaggtaatggcgtcgatcga 241
            || |||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 1571 gctgatcgaacggatttgaggcagaggagatgagaata---aggtaatggcgtcgatcga 1627

                                                   
Query: 242  gaggtcgtgtcttggtcgaacctgtcccattttcttgta 280
            ||||||||||||||||||| |||||||  ||||||||||
Sbjct: 1628 gaggtcgtgtcttggtcgatcctgtccggttttcttgta 1666



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 280  acggtgatgttcagacttcag 300
            |||||||||||||||||||||
Sbjct: 1684 acggtgatgttcagacttcag 1704

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>gb|AY104414.1| Zea mays PCO077228 mRNA sequence
          Length = 1117

 Score =  131 bits (66), Expect = 3e-27
 Identities = 85/90 (94%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
           |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 571 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtcagggccaccgcactg 629

                                         
Query: 67  cgccgggagatggggaagctcaccttgtga 96
           ||||||||||||| |||| |||||||||||
Sbjct: 630 cgccgggagatggagaaggtcaccttgtga 659

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>ref|XM_467759.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1778

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
            |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 1384 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 1442

                                          
Query: 67   cgccgggagatggggaagctcaccttgtga 96
            ||||| ||||||| |||| |||||||||||
Sbjct: 1443 cgccgcgagatggagaaggtcaccttgtga 1472

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>ref|XM_506969.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.38 mRNA
          Length = 1828

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
            |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 1384 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 1442

                                          
Query: 67   cgccgggagatggggaagctcaccttgtga 96
            ||||| ||||||| |||| |||||||||||
Sbjct: 1443 cgccgcgagatggagaaggtcaccttgtga 1472

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                            
Query: 7        tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
                |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 31266850 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 31266908

                                              
Query: 67       cgccgggagatggggaagctcaccttgtga 96
                ||||| ||||||| |||| |||||||||||
Sbjct: 31266909 cgccgcgagatggagaaggtcaccttgtga 31266938

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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                          
Query: 7      tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
              |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 146693 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 146751

                                            
Query: 67     cgccgggagatggggaagctcaccttgtga 96
              ||||| ||||||| |||| |||||||||||
Sbjct: 146752 cgccgcgagatggagaaggtcaccttgtga 146781

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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                         
Query: 7     tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
             |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 36718 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 36776

                                           
Query: 67    cgccgggagatggggaagctcaccttgtga 96
             ||||| ||||||| |||| |||||||||||
Sbjct: 36777 cgccgcgagatggagaaggtcaccttgtga 36806

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>dbj|AK098873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C18, full
            insert sequence
          Length = 1778

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
            |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 1385 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 1443

                                          
Query: 67   cgccgggagatggggaagctcaccttgtga 96
            ||||| ||||||| |||| |||||||||||
Sbjct: 1444 cgccgcgagatggagaaggtcaccttgtga 1473

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>dbj|AK061968.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H01, full
            insert sequence
          Length = 1828

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 81/90 (90%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    tcgaggacatcaagnctcgccgtcaacaccatcggcagcctcgtcagggccaccgcgctg 66
            |||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| || 
Sbjct: 1384 tcgacgacatcaag-ctcgccgtcaacaccatcggcagcctcgtccgcgccaccgccctc 1442

                                          
Query: 67   cgccgggagatggggaagctcaccttgtga 96
            ||||| ||||||| |||| |||||||||||
Sbjct: 1443 cgccgcgagatggagaaggtcaccttgtga 1472

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>emb|AL359834.18| Human DNA sequence from clone RP11-121P12 on chromosome 1 Contains
            the 3' end of a novel gene, complete sequence
          Length = 70248

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 204  agaggagatgagaataaagaggt 226
            |||||||||||||||||||||||
Sbjct: 4970 agaggagatgagaataaagaggt 4992

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>gb|AC154635.2| Mus musculus BAC clone RP23-299N21 from 13, complete sequence
          Length = 157982

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 202   gcagaggagatgagaataaaga 223
             ||||||||||||||||||||||
Sbjct: 61771 gcagaggagatgagaataaaga 61750

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>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 377    tttttgttcatgtttgttctc 397
              |||||||||||||||||||||
Sbjct: 105968 tttttgttcatgtttgttctc 105988

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>gb|AC115014.6| Mus musculus chromosome 3, clone RP24-196G4, complete sequence
          Length = 169069

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 377    tttttgttcatgtttgttctc 397
              |||||||||||||||||||||
Sbjct: 163516 tttttgttcatgtttgttctc 163496

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>ref|XM_521035.1| PREDICTED: Pan troglodytes similar to PCTAIRE protein kinase 1;
            serine/threonine-protein kinase (LOC465602), mRNA
          Length = 2547

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 2043 ccctgacatcctgcttgggt 2062

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>gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, complete sequence
          Length = 204557

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    ggcagaggagatgagaataa 220
              ||||||||||||||||||||
Sbjct: 106823 ggcagaggagatgagaataa 106842

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>ref|NM_006201.3| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 1,
            mRNA
          Length = 3130

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1383 ccctgacatcctgcttgggt 1402

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>ref|NM_033018.2| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 2,
            mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1425 ccctgacatcctgcttgggt 1444

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>ref|XM_472947.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cgcgctgcgccgggagatgg 79
           ||||||||||||||||||||
Sbjct: 174 cgcgctgcgccgggagatgg 193

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>gb|BC006190.2| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone MGC:10347
            IMAGE:3830397), complete cds
          Length = 2987

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1239 ccctgacatcctgcttgggt 1258

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>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete sequence
          Length = 174545

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    cgatatgtgaatgaatgtag 356
              ||||||||||||||||||||
Sbjct: 116628 cgatatgtgaatgaatgtag 116647

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>gb|BC001048.2| Homo sapiens PCTAIRE protein kinase 1, transcript variant 2, mRNA
            (cDNA clone MGC:1330 IMAGE:3504276), complete cds
          Length = 2176

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1425 ccctgacatcctgcttgggt 1444

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>gb|BC015607.2| Homo sapiens PCTAIRE protein kinase 1, transcript variant 2, mRNA
            (cDNA clone MGC:23461 IMAGE:4762081), complete cds
          Length = 3142

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1392 ccctgacatcctgcttgggt 1411

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ggccaccgcgctgcgccggg 73
              ||||||||||||||||||||
Sbjct: 102404 ggccaccgcgctgcgccggg 102385

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>ref|XM_386685.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06509.1)
           partial mRNA
          Length = 1617

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 tgttcatgtttgttctcgcg 400
           ||||||||||||||||||||
Sbjct: 419 tgttcatgtttgttctcgcg 438

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>gb|BC009852.2| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone
           IMAGE:3632161), partial cds
          Length = 1484

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 ccctgacatcctgcttgggt 137
           ||||||||||||||||||||
Sbjct: 685 ccctgacatcctgcttgggt 704

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>ref|XM_546338.2| PREDICTED: Canis familiaris similar to F-box only protein 4 isoform
           1 (LOC489220), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  atcggcagcctcgtcagggc 56
           ||||||||||||||||||||
Sbjct: 191 atcggcagcctcgtcagggc 172

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>emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chromosome 13q21.33-22.3
              Contains the SCEL gene for sciellin, a novel gene and a CpG
              island, complete sequence
          Length = 193098

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    ttttttgttcatgtttgttc 395
              ||||||||||||||||||||
Sbjct: 130725 ttttttgttcatgtttgttc 130744

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>emb|AL096791.13|HSJ659F15 Human DNA sequence from clone RP4-659F15 on chromosome Xp11.21-11.4
            Contains the PCTK1 gene for PCTAIRE protein kinase 1, the
            USP11 gene for ubiquitin specific protease 11 (UXH1) and
            a CpG Island, complete sequence
          Length = 41087

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 6342 ccctgacatcctgcttgggt 6361

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>emb|X66363.1|HSSTHPKD H.sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase
          Length = 1745

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1110 ccctgacatcctgcttgggt 1129

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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    cgcgctgcgccgggagatgg 79
             ||||||||||||||||||||
Sbjct: 94375 cgcgctgcgccgggagatgg 94394

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>gb|BT007518.1| Synthetic construct Homo sapiens PCTAIRE protein kinase 1 mRNA,
            partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 987  ccctgacatcctgcttgggt 1006

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>emb|CR383668.12| Zebrafish DNA sequence from clone DKEY-199M13 in linkage group 3,
             complete sequence
          Length = 228685

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   tgtgaatgaatgtagtataa 361
             ||||||||||||||||||||
Sbjct: 31605 tgtgaatgaatgtagtataa 31586

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>gb|BT006827.1| Homo sapiens PCTAIRE protein kinase 1 mRNA, complete cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 987  ccctgacatcctgcttgggt 1006

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>gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chromosome unknown,
             complete sequence
          Length = 186532

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 370   ttcaagttttttgttcatgtttgt 393
             |||||||||||||||||| |||||
Sbjct: 44712 ttcaagttttttgttcatatttgt 44735

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>gb|AC183302.2| Pan troglodytes BAC clone CH251-258O5 from chromosome unknown, complete
             sequence
          Length = 211208

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   ttcaagttttttgttcatgtttgt 393
             |||||||||||||||||| |||||
Sbjct: 55798 ttcaagttttttgttcatatttgt 55775

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>dbj|AK131486.1| Homo sapiens cDNA FLJ16665 fis, clone THYMU2031249, highly  similar
            to SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-)
          Length = 3016

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 2123 ccctgacatcctgcttgggt 2142

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>emb|CR620813.1| full-length cDNA clone CS0DC008YH12 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1574

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1381 ccctgacatcctgcttgggt 1400

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>ref|NM_141571.2| Drosophila melanogaster CG8223-RA (CG8223), mRNA
          Length = 1997

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 27  cgtcaacaccatcggcagcctcgtcagg 54
           ||||| || |||||||||||||||||||
Sbjct: 607 cgtcatcatcatcggcagcctcgtcagg 580

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>gb|AY069666.1| Drosophila melanogaster LD44305 full length cDNA
          Length = 1997

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 27  cgtcaacaccatcggcagcctcgtcagg 54
           ||||| || |||||||||||||||||||
Sbjct: 595 cgtcatcatcatcggcagcctcgtcagg 568

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>emb|BX119930.5| Zebrafish DNA sequence from clone DKEY-18G4 in linkage group 3, complete
              sequence
          Length = 186318

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    tttttgttcatgtttgttct 396
              ||||||||||||||||||||
Sbjct: 142871 tttttgttcatgtttgttct 142890

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>gb|AC009512.6| Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone
             BACR01F13, complete sequence
          Length = 167467

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 27    cgtcaacaccatcggcagcctcgtcagg 54
             ||||| || |||||||||||||||||||
Sbjct: 37684 cgtcatcatcatcggcagcctcgtcagg 37711

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>gb|AY335624.1| Synthetic construct Homo sapiens PCTAIRE protein kinase 1 (PCTK1)
            mRNA, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 987  ccctgacatcctgcttgggt 1006

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       cgcgctgcgccgggagatgg 79
                ||||||||||||||||||||
Sbjct: 24271963 cgcgctgcgccgggagatgg 24271982

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>gb|AC008314.7|AC008314 Drosophila melanogaster, chromosome 3R, region 85B-85B, BAC clone
             BACR02B21, complete sequence
          Length = 186322

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 27    cgtcaacaccatcggcagcctcgtcagg 54
             ||||| || |||||||||||||||||||
Sbjct: 50935 cgtcatcatcatcggcagcctcgtcagg 50908

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>gb|AE004613.1| Pseudomonas aeruginosa PAO1, section 174 of 529 of the complete genome
          Length = 20342

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    ggccaccgcgctgcgccgggagat 77
             ||||| ||||||||||||||||||
Sbjct: 16459 ggccagcgcgctgcgccgggagat 16482

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>emb|AJ535489.3|OSA535489 Oryza sativa (indica cultivar-group) mRNA for RML1 protein
          Length = 1766

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cgcgctgcgccgggagatgg 79
           ||||||||||||||||||||
Sbjct: 176 cgcgctgcgccgggagatgg 195

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>gb|AY891941.1| Synthetic construct Homo sapiens clone FLH013086.01L PCTAIRE protein
            kinase 1 (PCTK1) mRNA, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 987  ccctgacatcctgcttgggt 1006

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>gb|AY891940.1| Synthetic construct Homo sapiens clone FLH013085.01L PCTAIRE protein
            kinase 1 (PCTK1) mRNA, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 987  ccctgacatcctgcttgggt 1006

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>gb|AY889470.1| Synthetic construct Homo sapiens clone FLH013089.01X PCTAIRE protein
            kinase 1 (PCTK1) mRNA, complete cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 987  ccctgacatcctgcttgggt 1006

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>emb|BX004869.13| Zebrafish DNA sequence from clone CH211-69E21 in linkage group 17,
             complete sequence
          Length = 182325

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   tttttgttcatgtttgttct 396
             ||||||||||||||||||||
Sbjct: 88294 tttttgttcatgtttgttct 88313

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>dbj|AK103296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125B02, full
           insert sequence
          Length = 1873

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cgcgctgcgccgggagatgg 79
           ||||||||||||||||||||
Sbjct: 270 cgcgctgcgccgggagatgg 289

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>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05,
           complete sequence
          Length = 61795

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cgcgctgcgccgggagatgg 79
           ||||||||||||||||||||
Sbjct: 401 cgcgctgcgccgggagatgg 420

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>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the
             complete sequence
          Length = 270517

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 27    cgtcaacaccatcggcagcctcgtcagg 54
             ||||| || |||||||||||||||||||
Sbjct: 91797 cgtcatcatcatcggcagcctcgtcagg 91770

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>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25,
             complete sequence
          Length = 196037

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   tgtgaatgaatgtagtataa 361
             ||||||||||||||||||||
Sbjct: 88798 tgtgaatgaatgtagtataa 88779

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>emb|CR628371.8| Zebrafish DNA sequence from clone CH211-250J16 in linkage group 10,
              complete sequence
          Length = 153880

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    tgtgaatgaatgtagtataa 361
              ||||||||||||||||||||
Sbjct: 106981 tgtgaatgaatgtagtataa 107000

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>gb|AC153533.4| Mus musculus 10 BAC RP23-474K10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187069

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cgatatgtgaatgaatgtag 356
              ||||||||||||||||||||
Sbjct: 126234 cgatatgtgaatgaatgtag 126215

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>gb|AF055296.1|AF055296 Zantedeschia aethiopica geranylgeranyl reductase mRNA, partial cds
          Length = 995

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 25  gccgtcaacaccatcggcagcctc 48
           |||||||| |||||||||||||||
Sbjct: 784 gccgtcaagaccatcggcagcctc 807

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>dbj|AB209465.1| Homo sapiens premature mRNA for Hypothetical protein FLJ16665 variant
          Length = 3388

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccctgacatcctgcttgggt 137
            ||||||||||||||||||||
Sbjct: 1659 ccctgacatcctgcttgggt 1678


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,086,635
Number of Sequences: 3902068
Number of extensions: 4086635
Number of successful extensions: 84660
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84451
Number of HSP's gapped (non-prelim): 207
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result