ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome... 109 9e-21
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 109 9e-21
4gb|BT017321.1| Zea mays clone EL01N0319C08.c mRNA sequence 103 6e-19
5gb|AF457936.1| Zea mays clone cho1c.pk002.j14, mRNA sequence 103 6e-19
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 100 9e-18
8emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa... 100 9e-18
9gb|AY109342.1| Zea mays CL3469_4 mRNA sequence 96 1e-16
10dbj|AK059123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
11ref|NM_194080.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 92 2e-15
13gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 92 2e-15
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
15gb|AY110912.1| Zea mays CL3469_2 mRNA sequence 80 8e-12
16gb|AY109560.1| Zea mays CL3469_8 mRNA sequence 80 8e-12
17gb|AY846831.1| Triticum aestivum ribosomal protein S29 mRNA, com... 68 3e-08
18gb|AY310769.1| Nicotiana benthamiana clone 8-039 unknown mRNA 50 0.007
19gb|AC123899.15| Medicago truncatula clone mth2-33n6, complete se... 50 0.007
20emb|CR931730.1| Medicago truncatula chromosome 5 clone mth2-17o... 50 0.007
21gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-2... 50 0.007
22gb|AF345525.1| TT virus isolate TCHN-D2 Orf2 and Orf1 genes, com... 42 1.7
23gb|AY088245.1| Arabidopsis thaliana clone 473 mRNA, complete seq... 42 1.7
24ref|NM_119544.3| Arabidopsis thaliana structural constituent of ... 40 6.9
25ref|XM_629928.1| Dictyostelium discoideum hypothetical protein (... 40 6.9
26ref|XM_712669.1| Candida albicans SC5314 hypothetical protein (C... 40 6.9
27ref|XM_712668.1| Candida albicans SC5314 hypothetical protein (C... 40 6.9
28ref|XM_712575.1| Candida albicans SC5314 hypothetical protein (C... 40 6.9
29ref|XM_712574.1| Candida albicans SC5314 hypothetical protein (C... 40 6.9
30gb|DQ017120.1| Nelumbo nucifera RNA polymerase II second largest... 40 6.9
31emb|CR388381.12| Zebrafish DNA sequence from clone CH211-222P22 ... 40 6.9
32gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, comple... 40 6.9
33emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BA... 40 6.9
34emb|AL451018.1|NC99H12 Neurospora crassa DNA linkage group V Cos... 40 6.9
35emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, ... 40 6.9
36emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BA... 40 6.9
37emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in... 40 6.9
38gb|DQ401084.1| Chlamydomonas sp. ICE-L ribosomal protein S29 sub... 40 6.9
39gb|AF325031.2|AF325031 Arabidopsis thaliana AT3g43980 (AT3g43980... 40 6.9
40emb|BX841605.1|CNS09YHD Arabidopsis thaliana Full-length cDNA Co... 40 6.9
41emb|BX841514.1|CNS09YHL Arabidopsis thaliana Full-length cDNA Co... 40 6.9
42gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, comple... 40 6.9
43gb|AY086371.1| Arabidopsis thaliana clone 24629 mRNA, complete s... 40 6.9
44dbj|AK176815.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
45dbj|AK176861.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
46dbj|AK176439.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
47dbj|AK176332.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
48dbj|AK176322.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
49dbj|AK176295.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
50dbj|AK176294.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
51dbj|AK176070.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
52dbj|AK176060.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
53dbj|AK175918.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
54dbj|AK175819.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
55dbj|AK175739.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
56dbj|AK175731.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
57dbj|AK175283.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
58dbj|AK175173.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
59dbj|AK175172.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
60dbj|AK175152.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
61dbj|AK175132.1| Arabidopsis thaliana mRNA for ribosomal S29 subu... 40 6.9
62dbj|AK118617.1| Arabidopsis thaliana At4g33865 mRNA for putative... 40 6.9
63emb|X13254.1|NCCRP1R Neurospora crassa crp-1 mRNA for ribosomal ... 40 6.9
64emb|X06320.1|NCCRP1G Neurospora crassa crp-1 gene for ribosomal ... 40 6.9
65emb|AL139020.5|CNS01DX2 Human chromosome 14 DNA sequence BAC R-1... 40 6.9
66gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.9 
>gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0039F06, complete sequence
          Length = 133022

 Score =  109 bits (55), Expect = 9e-21
 Identities = 64/67 (95%)
 Strand = Plus / Minus

                                                                         
Query: 22    cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
             ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 87381 cgatgggccactccaacgtgtggaactcccaccccaagaactacgggcccggctcccgcg 87322

                    
Query: 82    tctggta 88
             |||||||
Sbjct: 87321 tctggta 87315
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  109 bits (55), Expect = 9e-21
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                            
Query: 22       cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
                ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 24118045 cgatgggccactccaacgtgtggaactcccaccccaagaactacgggcccggctcccgcg 24118104

                       
Query: 82       tctggta 88
                |||||||
Sbjct: 24118105 tctggta 24118111
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  109 bits (55), Expect = 9e-21
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                            
Query: 22       cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
                ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 24429714 cgatgggccactccaacgtgtggaactcccaccccaagaactacgggcccggctcccgcg 24429773

                       
Query: 82       tctggta 88
                |||||||
Sbjct: 24429774 tctggta 24429780
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>gb|BT017321.1| Zea mays clone EL01N0319C08.c mRNA sequence
          Length = 424

 Score =  103 bits (52), Expect = 6e-19
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                       
Query: 22  cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
           ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 41  cgatggggcactccaacgtgtggaactcgcaccccaagaactacgggcccggatcccgcg 100

               
Query: 82  tctg 85
           ||||
Sbjct: 101 tctg 104
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>gb|AF457936.1| Zea mays clone cho1c.pk002.j14, mRNA sequence
          Length = 402

 Score =  103 bits (52), Expect = 6e-19
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 22 cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
          ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 27 cgatggggcactccaacgtgtggaactcgcaccccaagaactacgggcccggatcccgcg 86

              
Query: 82 tctg 85
          ||||
Sbjct: 87 tctg 90
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                            
Query: 23       gatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgt 82
                |||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 19577506 gatggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgt 19577565

                      
Query: 83       ctggta 88
                ||||||
Sbjct: 19577566 ctggta 19577571
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                            
Query: 23       gatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgt 82
                |||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 19503719 gatggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgt 19503778

                      
Query: 83       ctggta 88
                ||||||
Sbjct: 19503779 ctggta 19503784
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>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144596

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                          
Query: 23     gatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgt 82
              |||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 109687 gatggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgt 109746

                    
Query: 83     ctggta 88
              ||||||
Sbjct: 109747 ctggta 109752
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>gb|AY109342.1| Zea mays CL3469_4 mRNA sequence
          Length = 814

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                       
Query: 22  cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
           ||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 57  cgatggggcactccaacgtctggaactcgcaccccaagaactacgggcccggatcccgcg 116

               
Query: 82  tctg 85
           ||||
Sbjct: 117 tctg 120
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>dbj|AK059123.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F08, full
           insert sequence
          Length = 457

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                       
Query: 23  gatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgt 82
           |||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 87  gatggggcactccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgt 146

              
Query: 83  ctg 85
           |||
Sbjct: 147 ctg 149
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>ref|NM_194080.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 509

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcc 77
          ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 33 atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatcc 86
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                      
Query: 24       atgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcc 77
                ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 31739424 atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatcc 31739371
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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
             sequence
          Length = 134496

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                   
Query: 24    atgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcc 77
             ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 64650 atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatcc 64597
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                      
Query: 24       atgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcc 77
                ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 31829940 atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatcc 31829887
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>gb|AY110912.1| Zea mays CL3469_2 mRNA sequence
          Length = 489

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 25  tgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatc 76
           |||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 92  tgggacactccaacgtgtggaactcgcaccccaagaactacggccctggatc 143
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>gb|AY109560.1| Zea mays CL3469_8 mRNA sequence
          Length = 586

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                      
Query: 22 cgatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccgcg 81
          ||||||| ||||||||||| |||||||| ||||| |||||||||||||| || |||||||
Sbjct: 31 cgatgggccactccaacgtttggaactcgcaccctaagaactacggccctggctcccgcg 90

              
Query: 82 tctg 85
          ||||
Sbjct: 91 tctg 94
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>gb|AY846831.1| Triticum aestivum ribosomal protein S29 mRNA, complete cds
          Length = 398

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcc 77
          ||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 39 atgggacactcgaacgtctggaactcgcaccccaagaactacggcgccggatcc 92
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>gb|AY310769.1| Nicotiana benthamiana clone 8-039 unknown mRNA
          Length = 392

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 23  gatgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatcccg 79
           |||||||||||| ||| | |||||  | |||||||||||||||||||| || |||||
Sbjct: 57  gatgggtcactctaacatctggaatgctcaccccaagaactacggccctggctcccg 113
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>gb|AC123899.15| Medicago truncatula clone mth2-33n6, complete sequence
          Length = 127126

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 24     atgggtcactccaacgtgtggaactcccaccccaaga 60
              |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 126508 atgggtcactccaatgtgtggaactctcaccctaaga 126472
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>emb|CR931730.1| Medicago truncatula chromosome 5 clone  mth2-17o15, COMPLETE
           SEQUENCE
          Length = 89342

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 24  atgggtcactccaacgtgtggaactcccaccccaaga 60
           |||||||||||||| || |||||||| ||||||||||
Sbjct: 130 atgggtcactccaatgtctggaactctcaccccaaga 166
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>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete
             sequence
          Length = 123020

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 24    atgggtcactccaacgtgtggaactcccaccccaaga 60
             |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 18705 atgggtcactccaatgtgtggaactctcaccctaaga 18669
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>gb|AF345525.1| TT virus isolate TCHN-D2 Orf2 and Orf1 genes, complete cds
          Length = 3196

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 406  cttgcaagttttaagctgcacttta 430
            ||||||||||| |||||||||||||
Sbjct: 2918 cttgcaagtttgaagctgcacttta 2894
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>gb|AY088245.1| Arabidopsis thaliana clone 473 mRNA, complete sequence
          Length = 401

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacggccccggatc 76
           ||||||||||| || || ||||||||||| || ||||| ||||| || |||||
Sbjct: 78  atgggtcactctaatgtatggaactcccatccgaagaagtacggtcctggatc 130
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>ref|NM_119544.3| Arabidopsis thaliana structural constituent of ribosome AT4G33865
           mRNA, complete cds
          Length = 439

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 83  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 126
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>ref|XM_629928.1| Dictyostelium discoideum hypothetical protein (DDB0184065), partial
           mRNA
          Length = 2970

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tgctttttcatctgtttgct 358
           ||||||||||||||||||||
Sbjct: 606 tgctttttcatctgtttgct 587
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>ref|XM_712669.1| Candida albicans SC5314 hypothetical protein (CaO19_5387), mRNA
          Length = 4041

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   cggaagcggagaagacgatg 26
           ||||||||||||||||||||
Sbjct: 234 cggaagcggagaagacgatg 253
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>ref|XM_712668.1| Candida albicans SC5314 hypothetical protein (CaO19_5386), mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   cggaagcggagaagacgatg 26
           ||||||||||||||||||||
Sbjct: 150 cggaagcggagaagacgatg 131
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>ref|XM_712575.1| Candida albicans SC5314 hypothetical protein (CaO19_12842), mRNA
          Length = 4041

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   cggaagcggagaagacgatg 26
           ||||||||||||||||||||
Sbjct: 234 cggaagcggagaagacgatg 253
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>ref|XM_712574.1| Candida albicans SC5314 hypothetical protein (CaO19_12841), mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   cggaagcggagaagacgatg 26
           ||||||||||||||||||||
Sbjct: 150 cggaagcggagaagacgatg 131
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>gb|DQ017120.1| Nelumbo nucifera RNA polymerase II second largest subunit (RPB2)
           gene, exons 2 through 23 and partial cds
          Length = 5530

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 410 caagttttaagctgcacttt 429
           ||||||||||||||||||||
Sbjct: 959 caagttttaagctgcacttt 978
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>emb|CR388381.12| Zebrafish DNA sequence from clone CH211-222P22 in linkage group 16,
             complete sequence
          Length = 141855

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tggtggtgcttgcaagtttt 417
             ||||||||||||||||||||
Sbjct: 43581 tggtggtgcttgcaagtttt 43600
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>gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, complete sequence
          Length = 179641

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    ttcatctgtttgctaggaat 364
              ||||||||||||||||||||
Sbjct: 150284 ttcatctgtttgctaggaat 150303
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>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24
          Length = 157180

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   atgttgtctgctggtggtgc 406
             ||||||||||||||||||||
Sbjct: 39975 atgttgtctgctggtggtgc 39956
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>emb|AL451018.1|NC99H12 Neurospora crassa DNA linkage group V Cosmid contig 99H12
          Length = 85165

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   atgttgtctgctggtggtgc 406
             ||||||||||||||||||||
Sbjct: 25266 atgttgtctgctggtggtgc 25285
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>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
          Length = 192861

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 24    atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
             ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 67671 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 67628
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>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone  F17I5 (ESSA project)
          Length = 86748

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 24    atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
             ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 18647 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 18604
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>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1,
             complete sequence
          Length = 214471

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aactctcccaatggctcccg 127
             ||||||||||||||||||||
Sbjct: 73793 aactctcccaatggctcccg 73774
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>gb|DQ401084.1| Chlamydomonas sp. ICE-L ribosomal protein S29 subunit mRNA,
          complete cds
          Length = 735

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 50 ccaccccaagaactacggcc 69
          ||||||||||||||||||||
Sbjct: 76 ccaccccaagaactacggcc 95
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>gb|AF325031.2|AF325031 Arabidopsis thaliana AT3g43980 (AT3g43980/T15B3_120) mRNA, complete
           cds
          Length = 420

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 80  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 123
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>emb|BX841605.1|CNS09YHD Arabidopsis thaliana Full-length cDNA Complete sequence from
          clone GSLTSIL66ZF11 of Silique of strain col-0 of
          Arabidopsis thaliana (thale cress)
          Length = 358

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 16 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 59
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>emb|BX841514.1|CNS09YHL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB28ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 413

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 57  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 100
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>gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, complete sequence
          Length = 111078

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 342   tttttcatctgtttgctaggaattaatg 369
             ||||||||| ||||| ||||||||||||
Sbjct: 51722 tttttcatcagtttgttaggaattaatg 51695
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>gb|AY086371.1| Arabidopsis thaliana clone 24629 mRNA, complete sequence
          Length = 423

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 83  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 126
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>dbj|AK176815.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds,
           clone: RAFL25-36-M09
          Length = 496

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 57  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 100
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>dbj|AK176861.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL25-41-O05
          Length = 359

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 44 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 87
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>dbj|AK176439.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL24-19-N14
          Length = 367

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK176332.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds,
           clone: RAFL23-32-J11
          Length = 385

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 85  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 128
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>dbj|AK176322.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL23-29-F01
          Length = 370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK176295.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL23-24-M01
          Length = 368

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 50 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 93
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>dbj|AK176294.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL23-24-E02
          Length = 370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK176070.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL22-81-B04
          Length = 407

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK176060.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL22-80-C13
          Length = 407

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK175918.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds,
           clone: RAFL22-58-A09
          Length = 407

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 57  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 100
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>dbj|AK175819.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL22-41-I17
          Length = 407

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK175739.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL22-28-I01
          Length = 407

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK175731.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL22-27-J17
          Length = 407

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK175283.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL21-72-B11
          Length = 388

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK175173.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL21-59-B22
          Length = 359

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 44 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 87
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>dbj|AK175172.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL21-59-A02
          Length = 370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 52 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 95
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>dbj|AK175152.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds,
           clone: RAFL21-57-E24
          Length = 423

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 68  atgggtcactccaacgtctggaattctcatcctaagaaatacgg 111
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>dbj|AK175132.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete
          cds, clone: RAFL21-54-P17
          Length = 394

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 24 atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
          ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 44 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 87
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>dbj|AK118617.1| Arabidopsis thaliana At4g33865 mRNA for putative ribosomal S29
           subunit, complete cds, clone: RAFL19-88-C17
          Length = 427

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 24  atgggtcactccaacgtgtggaactcccaccccaagaactacgg 67
           ||||||||||||||||| ||||| || || || ||||| |||||
Sbjct: 101 atgggtcactccaacgtctggaattctcatcctaagaaatacgg 144
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>emb|X13254.1|NCCRP1R Neurospora crassa crp-1 mRNA for ribosomal protein homologous to
           yeast cyH2 gene encoding L29
          Length = 850

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 atgttgtctgctggtggtgc 406
           ||||||||||||||||||||
Sbjct: 28  atgttgtctgctggtggtgc 9
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>emb|X06320.1|NCCRP1G Neurospora crassa crp-1 gene for ribosomal protein homologous to
           yeast cyH2 gene encoding L29
          Length = 2214

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 atgttgtctgctggtggtgc 406
           ||||||||||||||||||||
Sbjct: 762 atgttgtctgctggtggtgc 743
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>emb|AL139020.5|CNS01DX2 Human chromosome 14 DNA sequence BAC R-164H13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166308

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    aaactgtgtttgatgtttga 464
              ||||||||||||||||||||
Sbjct: 158074 aaactgtgtttgatgtttga 158093
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 73    gatcccgcgtctggtaagcgcccactgc 100
             ||||||||||| || |||||||||||||
Sbjct: 13317 gatcccgcgtccggcaagcgcccactgc 13290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,692,390
Number of Sequences: 3902068
Number of extensions: 3692390
Number of successful extensions: 72989
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72803
Number of HSP's gapped (non-prelim): 186
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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