ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4p22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596543.1| Saccharum officinarum clone SCCCCL4007B07, complete sequence Length = 1774 Score = 434 bits (219), Expect = e-118 Identities = 398/457 (87%), Gaps = 1/457 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 |||||||||||||||||| || ||||| || || |||||||| ||||| || ||| |||| Sbjct: 799 gaaccctggcatggaggatgatccaacttgtggtcctatcctagacaatgttgccgtcaa 858 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| | || |||||| ||||||| ||| ||||| | ||||||||||||||||| Sbjct: 859 gaagctcttcactccagacaaaccaaaggataacgtggtgctgaatggagactttgagga 918 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| ||||||||||| || ||||| ||||| ||||| |||||||| || ||||||||||| Sbjct: 919 gggtccatggatgttcccgaacacgagctttggcgtgctgctcccaactaaccttgacga 978 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 ||||||||| ||| |||| || ||||||||||| || |||||||| ||||||| ||| || Sbjct: 979 gcagacatctgccatacctggttggatgatcgagtcaaaccgcgccgtccgctacataga 1038 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| || |||||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 1039 ctctgatgagtacaag-gttccccaggggaagcgtgccattgagcttctgtcaggcaagg 1097 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 |||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct: 1098 agggtatcatctcccagatggttgagacgacccctcagaaggtttacagcctgacgttca 1157 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 | |||||| |||| || || |||||||| |||||||||||||||||||||||||| || | Sbjct: 1158 cactgggcacggcgggggactcgtgccaaccaccaatggccgtcatggcattcgcggggg 1217 Query: 455 accaggcccagaacttncactactcccctatgggcaa 491 | |||||||||||||| ||||||||||| |||||||| Sbjct: 1218 atcaggcccagaacttccactactccccaatgggcaa 1254
>gb|AY108251.1| Zea mays PCO077043 mRNA sequence Length = 1664 Score = 426 bits (215), Expect = e-116 Identities = 397/457 (86%), Gaps = 1/457 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 |||||||||||||||||| || ||||| || || |||||||| |||||||| ||| |||| Sbjct: 751 gaaccctggcatggaggatgatccaacttgtggtcctatcctagacaacgttgccgtcaa 810 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| |||| |||||| ||||||| ||| ||||| | ||||||||||||||||| Sbjct: 811 gaagctcttcaccccagacaaaccaaaggataacgtggtgctgaatggagactttgagga 870 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| ||||||||||| || ||||| ||||||||||| |||||||| || ||||||||||| Sbjct: 871 gggtccatggatgttccccaacacgagcttcggcgtgctgctcccaactaaccttgacga 930 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 ||| || || ||| |||| || ||||||||||| || |||||||| ||||||| ||| || Sbjct: 931 gcaaacgtctgccatacctggttggatgatcgagtcaaaccgcgccgtccgctacataga 990 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| || |||||| ||||||||||| ||||| |||||||||||||| || ||||||| Sbjct: 991 ctctgatgagtacaag-gttccccagggaaagcgtgccattgagcttctgtcaggcaagg 1049 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 |||| |||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| Sbjct: 1050 agggtatcatctcccagatggttgagaccacccctcagaaggtttacagcctgacgttca 1109 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 | |||||| |||| || || |||||||| |||||||||||||||||||||||||| || | Sbjct: 1110 cactgggcacggcgggggactcgtgccaaccaccaatggccgtcatggcattcgcggggg 1169 Query: 455 accaggcccagaacttncactactcccctatgggcaa 491 | |||||||||||||| ||||||||||| |||||||| Sbjct: 1170 atcaggcccagaacttccactactccccaatgggcaa 1206
>ref|NM_193187.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1017 Score = 369 bits (186), Expect = 6e-99 Identities = 392/460 (85%), Gaps = 1/460 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || |||||||||||||||||||| ||||| || Sbjct: 336 gaaccctggtatggaggatgatccgacttgtgggcctatccttgacaacgttgccataaa 395 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| | || |||||| ||||||| || ||||| ||||||||||||||||| Sbjct: 396 gaagctcttcactccagacaaaccaaaggataatgtggtgtcgaatggagactttgagga 455 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| |||||||||||||||||||| ||||| || || || ||||| || ||||| || || Sbjct: 456 gggtccatggatgtttccaaacacgagctttggggtgcttctcccaaccaacctcgatga 515 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 |||||| || ||||| || || |||||||| || || || || || |||||||| |||| Sbjct: 516 gcagacgtctgccttgcctggctggatgattgagtcaaatcgagctgtccgctttgtcga 575 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| ||||||||||| ||||||| ||||||||||||||||||||||| || || |||| Sbjct: 576 ctctgaccagtacacca-ttccccaagggaagcgcgccattgagcttctatcagggaagg 634 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 | ||||||||||| |||||||| ||||| ||||||||||| | ||||| |||||| |||| Sbjct: 635 aaggcatcatctcacagatggtcgagacaacccctcagaaagagtacagcctgacattca 694 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 | ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 695 cattgggctcagcaggggattcatgccagccaccaatggctgtcatggcattcgcaggtg 754 Query: 455 accaggcccagaacttncactactcccctatgggcaatgc 494 |||||||||||||||| |||||||| || ||||| ||||| Sbjct: 755 accaggcccagaacttccactactcgcccatgggtaatgc 794
>ref|NM_191286.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1200 Score = 361 bits (182), Expect = 1e-96 Identities = 391/460 (85%), Gaps = 1/460 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || || ||||||||||||||||| ||||| || Sbjct: 519 gaaccctggtatggaggatgatccgacttgtggacctatccttgacaacgttgccataaa 578 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| | || |||||| ||||||| | ||||| ||||||||||||||||| Sbjct: 579 gaagctcttcactccagacaaaccaaaggatactgtggtgtcaaatggagactttgagga 638 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| |||||||||||||||||||| ||||| || || || ||||| || ||||| || || Sbjct: 639 gggtccatggatgtttccaaacacgagctttggggtgcttctcccaaccaacctcgatga 698 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 |||||| || ||||| || || |||||||| || || ||||| || |||||||| |||| Sbjct: 699 gcagacgtctgccttgcctggctggatgattgagtcaaaccgagctgtccgctttgtcga 758 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| Sbjct: 759 ctctgaccaatacacc-gttccccaagggaagcgcgccattgagcttctatcagggaagg 817 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 | ||||||||||| |||||||| ||||| ||||||||||| | ||||| |||||| |||| Sbjct: 818 aaggcatcatctcacagatggtcgagacaacccctcagaaagagtacagcctgacattca 877 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 | ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 878 cattgggctcagcaggggattcatgccagccaccaatggctgtcatggcattcgcaggtg 937 Query: 455 accaggcccagaacttncactactcccctatgggcaatgc 494 |||||||||||||||| |||||||| || ||||| ||||| Sbjct: 938 accaggcccagaacttccactactcgcccatgggtaatgc 977
>dbj|AK102373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091N05, full insert sequence Length = 1630 Score = 361 bits (182), Expect = 1e-96 Identities = 391/460 (85%), Gaps = 1/460 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || || ||||||||||||||||| ||||| || Sbjct: 664 gaaccctggtatggaggatgatccgacttgtggacctatccttgacaacgttgccataaa 723 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| | || |||||| ||||||| | ||||| ||||||||||||||||| Sbjct: 724 gaagctcttcactccagacaaaccaaaggatactgtggtgtcaaatggagactttgagga 783 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| |||||||||||||||||||| ||||| || || || ||||| || ||||| || || Sbjct: 784 gggtccatggatgtttccaaacacgagctttggggtgcttctcccaaccaacctcgatga 843 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 |||||| || ||||| || || |||||||| || || ||||| || |||||||| |||| Sbjct: 844 gcagacgtctgccttgcctggctggatgattgagtcaaaccgagctgtccgctttgtcga 903 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| Sbjct: 904 ctctgaccaatacacc-gttccccaagggaagcgcgccattgagcttctatcagggaagg 962 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 | ||||||||||| |||||||| ||||| ||||||||||| | ||||| |||||| |||| Sbjct: 963 aaggcatcatctcacagatggtcgagacaacccctcagaaagagtacagcctgacattca 1022 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 | ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 1023 cattgggctcagcaggggattcatgccagccaccaatggctgtcatggcattcgcaggtg 1082 Query: 455 accaggcccagaacttncactactcccctatgggcaatgc 494 |||||||||||||||| |||||||| || ||||| ||||| Sbjct: 1083 accaggcccagaacttccactactcgcccatgggtaatgc 1122
>dbj|AK060989.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C09, full insert sequence Length = 1626 Score = 361 bits (182), Expect = 1e-96 Identities = 391/460 (85%), Gaps = 1/460 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || || ||||||||||||||||| ||||| || Sbjct: 665 gaaccctggtatggaggatgatccgacttgtggacctatccttgacaacgttgccataaa 724 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| | || |||||| ||||||| | ||||| ||||||||||||||||| Sbjct: 725 gaagctcttcactccagacaaaccaaaggatactgtggtgtcaaatggagactttgagga 784 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| |||||||||||||||||||| ||||| || || || ||||| || ||||| || || Sbjct: 785 gggtccatggatgtttccaaacacgagctttggggtgcttctcccaaccaacctcgatga 844 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 |||||| || ||||| || || |||||||| || || ||||| || |||||||| |||| Sbjct: 845 gcagacgtctgccttgcctggctggatgattgagtcaaaccgagctgtccgctttgtcga 904 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| Sbjct: 905 ctctgaccaatacacc-gttccccaagggaagcgcgccattgagcttctatcagggaagg 963 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 | ||||||||||| |||||||| ||||| ||||||||||| | ||||| |||||| |||| Sbjct: 964 aaggcatcatctcacagatggtcgagacaacccctcagaaagagtacagcctgacattca 1023 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 | ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 1024 cattgggctcagcaggggattcatgccagccaccaatggctgtcatggcattcgcaggtg 1083 Query: 455 accaggcccagaacttncactactcccctatgggcaatgc 494 |||||||||||||||| |||||||| || ||||| ||||| Sbjct: 1084 accaggcccagaacttccactactcgcccatgggtaatgc 1123
>gb|BT018989.1| Zea mays clone Contig451.F mRNA sequence Length = 1213 Score = 355 bits (179), Expect = 9e-95 Identities = 379/445 (85%), Gaps = 1/445 (0%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||||||||||||||| ||||| || || || ||||| |||||||| || |||| Sbjct: 200 gaaccctggcatggaggacgatccaacttgtggccccatcctagacaacgttgctgtcaa 259 Query: 95 gaagctcttctcccccgacaaagcaaaggagaacatggtggtcaatggagactttgagga 154 |||||||||| | || |||||| ||||||| ||| ||||| | ||||||||||||||||| Sbjct: 260 gaagctcttcactccggacaaaccaaaggataacgtggtgctgaatggagactttgagga 319 Query: 155 ggggccatggatgtttccaaacacaagcttcggcgtcctgctcccgacaaaccttgacga 214 ||| || |||||||| || ||||| ||||| ||||| |||||||| || |||||||| || Sbjct: 320 gggcccttggatgttcccgaacaccagctttggcgtgctgctcccaactaaccttgatga 379 Query: 215 gcagacatcggccttaccagggtggatgatcgaatcgaaccgcgcagtccgcttcatcga 274 ||||||||| ||| |||| || ||||||||||| || |||||||| ||||||| ||| || Sbjct: 380 gcagacatctgccatacctggctggatgatcgagtcaaaccgcgctgtccgctacataga 439 Query: 275 ctccgaccagtacacttgttccccaggggaagcgcgccattgagcttctctccggcaagg 334 ||| || ||||||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 440 ctctgatcagtaca-aggttccccaggggaagcgtgccattgagcttctgtcaggcaagg 498 Query: 335 agggcatcatctcgcagatggttgagacgacccctcagaaggcgtacatcctgacgttca 394 |||| |||||||| |||||||| |||||||||||| |||||| |||| ||||||| || Sbjct: 499 agggtatcatctcccagatggtcgagacgacccctgagaaggtttacagcctgacggcca 558 Query: 395 cgctgggctcggcaggngattcgtgccagccaccaatggccgtcatggcattcgcaggcg 454 ||||||| |||| || || || ||||| |||||||||||| ||||||| ||||| || | Sbjct: 559 tgctgggcgcggcgggggactcctgccaaccaccaatggccatcatggcgttcgccgggg 618 Query: 455 accaggcccagaacttncactactc 479 |||||||||||||||| || ||||| Sbjct: 619 accaggcccagaacttccattactc 643
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 315 bits (159), Expect = 8e-83 Identities = 308/357 (86%), Gaps = 1/357 (0%) Strand = Plus / Plus Query: 138 aatggagactttgaggaggggccatggatgtttccaaacacaagcttcggcgtcctgctc 197 |||||||||||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct: 31745762 aatggagactttgaggagggtccatggatgtttccaaacacgagctttggggtgcttctc 31745821 Query: 198 ccgacaaaccttgacgagcagacatcggccttaccagggtggatgatcgaatcgaaccgc 257 || || ||||| || |||||||| || ||||| || || |||||||| || || ||||| Sbjct: 31745822 ccaaccaacctcgatgagcagacgtctgccttgcctggctggatgattgagtcaaaccga 31745881 Query: 258 gcagtccgcttcatcgactccgaccagtacacttgttccccaggggaagcgcgccattga 317 || |||||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 31745882 gctgtccgctttgtcgactctgaccaatacacc-gttccccaagggaagcgcgccattga 31745940 Query: 318 gcttctctccggcaaggagggcatcatctcgcagatggttgagacgacccctcagaaggc 377 |||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| | Sbjct: 31745941 gcttctatcagggaaggaaggcatcatctcacagatggtcgagacaacccctcagaaaga 31746000 Query: 378 gtacatcctgacgttcacgctgggctcggcaggngattcgtgccagccaccaatggccgt 437 ||||| |||||| ||||| ||||||| ||||| ||||| ||||||||||||||||| || Sbjct: 31746001 gtacagcctgacattcacattgggctcagcaggggattcatgccagccaccaatggctgt 31746060 Query: 438 catggcattcgcaggcgaccaggcccagaacttncactactcccctatgggcaatgc 494 ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| Sbjct: 31746061 catggcattcgcaggtgaccaggcccagaacttccactactcgcccatgggtaatgc 31746117 Score = 307 bits (155), Expect = 2e-80 Identities = 307/357 (85%), Gaps = 1/357 (0%) Strand = Plus / Minus Query: 138 aatggagactttgaggaggggccatggatgtttccaaacacaagcttcggcgtcctgctc 197 |||||||||||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct: 19126948 aatggagactttgaggagggtccatggatgtttccaaacacgagctttggggtgcttctc 19126889 Query: 198 ccgacaaaccttgacgagcagacatcggccttaccagggtggatgatcgaatcgaaccgc 257 || || ||||| || |||||||| || ||||| || || |||||||| || || || || Sbjct: 19126888 ccaaccaacctcgatgagcagacgtctgccttgcctggctggatgattgagtcaaatcga 19126829 Query: 258 gcagtccgcttcatcgactccgaccagtacacttgttccccaggggaagcgcgccattga 317 || |||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| Sbjct: 19126828 gctgtccgctttgtcgactctgaccagtacacca-ttccccaagggaagcgcgccattga 19126770 Query: 318 gcttctctccggcaaggagggcatcatctcgcagatggttgagacgacccctcagaaggc 377 |||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| | Sbjct: 19126769 gcttctatcagggaaggaaggcatcatctcacagatggtcgagacaacccctcagaaaga 19126710 Query: 378 gtacatcctgacgttcacgctgggctcggcaggngattcgtgccagccaccaatggccgt 437 ||||| |||||| ||||| ||||||| ||||| ||||| ||||||||||||||||| || Sbjct: 19126709 gtacagcctgacattcacattgggctcagcaggggattcatgccagccaccaatggctgt 19126650 Query: 438 catggcattcgcaggcgaccaggcccagaacttncactactcccctatgggcaatgc 494 ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| Sbjct: 19126649 catggcattcgcaggtgaccaggcccagaacttccactactcgcccatgggtaatgc 19126593 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || |||||||||||||||||||| ||||| || Sbjct: 19127190 gaaccctggtatggaggatgatccgacttgtgggcctatccttgacaacgttgccataaa 19127131 Query: 95 gaagctcttctcccccgacaaagcaaagg 123 |||||||||| | || |||||| |||||| Sbjct: 19127130 gaagctcttcactccagacaaaccaaagg 19127102 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || || ||||||||||||||||| ||||| || Sbjct: 31745531 gaaccctggtatggaggatgatccgacttgtggacctatccttgacaacgttgccataaa 31745590 Query: 95 gaagctcttctcccccgacaaagcaaagg 123 |||||||||| | || |||||| |||||| Sbjct: 31745591 gaagctcttcactccagacaaaccaaagg 31745619
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1414_E05 Length = 105222 Score = 315 bits (159), Expect = 8e-83 Identities = 308/357 (86%), Gaps = 1/357 (0%) Strand = Plus / Plus Query: 138 aatggagactttgaggaggggccatggatgtttccaaacacaagcttcggcgtcctgctc 197 |||||||||||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct: 23800 aatggagactttgaggagggtccatggatgtttccaaacacgagctttggggtgcttctc 23859 Query: 198 ccgacaaaccttgacgagcagacatcggccttaccagggtggatgatcgaatcgaaccgc 257 || || ||||| || |||||||| || ||||| || || |||||||| || || ||||| Sbjct: 23860 ccaaccaacctcgatgagcagacgtctgccttgcctggctggatgattgagtcaaaccga 23919 Query: 258 gcagtccgcttcatcgactccgaccagtacacttgttccccaggggaagcgcgccattga 317 || |||||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 23920 gctgtccgctttgtcgactctgaccaatacacc-gttccccaagggaagcgcgccattga 23978 Query: 318 gcttctctccggcaaggagggcatcatctcgcagatggttgagacgacccctcagaaggc 377 |||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| | Sbjct: 23979 gcttctatcagggaaggaaggcatcatctcacagatggtcgagacaacccctcagaaaga 24038 Query: 378 gtacatcctgacgttcacgctgggctcggcaggngattcgtgccagccaccaatggccgt 437 ||||| |||||| ||||| ||||||| ||||| ||||| ||||||||||||||||| || Sbjct: 24039 gtacagcctgacattcacattgggctcagcaggggattcatgccagccaccaatggctgt 24098 Query: 438 catggcattcgcaggcgaccaggcccagaacttncactactcccctatgggcaatgc 494 ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| Sbjct: 24099 catggcattcgcaggtgaccaggcccagaacttccactactcgcccatgggtaatgc 24155 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || || ||||||||||||||||| ||||| || Sbjct: 23569 gaaccctggtatggaggatgatccgacttgtggacctatccttgacaacgttgccataaa 23628 Query: 95 gaagctcttctcccccgacaaagcaaagg 123 |||||||||| | || |||||| |||||| Sbjct: 23629 gaagctcttcactccagacaaaccaaagg 23657
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 307 bits (155), Expect = 2e-80 Identities = 307/357 (85%), Gaps = 1/357 (0%) Strand = Plus / Minus Query: 138 aatggagactttgaggaggggccatggatgtttccaaacacaagcttcggcgtcctgctc 197 |||||||||||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct: 92365 aatggagactttgaggagggtccatggatgtttccaaacacgagctttggggtgcttctc 92306 Query: 198 ccgacaaaccttgacgagcagacatcggccttaccagggtggatgatcgaatcgaaccgc 257 || || ||||| || |||||||| || ||||| || || |||||||| || || || || Sbjct: 92305 ccaaccaacctcgatgagcagacgtctgccttgcctggctggatgattgagtcaaatcga 92246 Query: 258 gcagtccgcttcatcgactccgaccagtacacttgttccccaggggaagcgcgccattga 317 || |||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| Sbjct: 92245 gctgtccgctttgtcgactctgaccagtacacca-ttccccaagggaagcgcgccattga 92187 Query: 318 gcttctctccggcaaggagggcatcatctcgcagatggttgagacgacccctcagaaggc 377 |||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||| | Sbjct: 92186 gcttctatcagggaaggaaggcatcatctcacagatggtcgagacaacccctcagaaaga 92127 Query: 378 gtacatcctgacgttcacgctgggctcggcaggngattcgtgccagccaccaatggccgt 437 ||||| |||||| ||||| ||||||| ||||| ||||| ||||||||||||||||| || Sbjct: 92126 gtacagcctgacattcacattgggctcagcaggggattcatgccagccaccaatggctgt 92067 Query: 438 catggcattcgcaggcgaccaggcccagaacttncactactcccctatgggcaatgc 494 ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| Sbjct: 92066 catggcattcgcaggtgaccaggcccagaacttccactactcgcccatgggtaatgc 92010 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 35 gaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggccatcaa 94 ||||||||| |||||||| || || || || |||||||||||||||||||| ||||| || Sbjct: 92607 gaaccctggtatggaggatgatccgacttgtgggcctatccttgacaacgttgccataaa 92548 Query: 95 gaagctcttctcccccgacaaagcaaagg 123 |||||||||| | || |||||| |||||| Sbjct: 92547 gaagctcttcactccagacaaaccaaagg 92519
>gb|AY111554.1| Zea mays CL1493_2 mRNA sequence Length = 797 Score = 168 bits (85), Expect = 1e-38 Identities = 150/174 (86%) Strand = Plus / Plus Query: 318 gcttctctccggcaaggagggcatcatctcgcagatggttgagacgacccctcagaaggc 377 |||||| || ||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct: 1 gcttctgtcaggcaaggagggtatcatctcccagatggttgagaccacccctcagaaggt 60 Query: 378 gtacatcctgacgttcacgctgggctcggcaggngattcgtgccagccaccaatggccgt 437 |||| |||||||||||| |||||| |||| | | |||||||| |||||||||||||| Sbjct: 61 ttacagcctgacgttcacactgggcacggcnnnnnactcgtgccaaccaccaatggccgt 120 Query: 438 catggcattcgcaggcgaccaggcccagaacttncactactcccctatgggcaa 491 |||||||||||| | |||||||||||||| ||||||||||| |||||||| Sbjct: 121 catggcattcgcnnnnnatcaggcccagaacttccactactccccaatgggcaa 174
>ref|NM_129003.3| Arabidopsis thaliana unknown protein AT2G34510 mRNA, complete cds Length = 1398 Score = 46.1 bits (23), Expect = 0.11 Identities = 61/74 (82%) Strand = Plus / Plus Query: 30 tttangaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggcc 89 |||| |||||||||||||||||| || || || || || |||||| ||||| || | ||| Sbjct: 610 tttaagaaccctggcatggaggatgatcctacttgtggacctatcattgacgacattgcc 669 Query: 90 atcaagaagctctt 103 | ||||||||||| Sbjct: 670 gttaagaagctctt 683
>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence Length = 93060 Score = 46.1 bits (23), Expect = 0.11 Identities = 61/74 (82%) Strand = Plus / Plus Query: 30 tttangaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggcc 89 |||| |||||||||||||||||| || || || || || |||||| ||||| || | ||| Sbjct: 58831 tttaagaaccctggcatggaggatgatcctacttgtggacctatcattgacgacattgcc 58890 Query: 90 atcaagaagctctt 103 | ||||||||||| Sbjct: 58891 gttaagaagctctt 58904
>gb|AF325081.1|AF325081 Arabidopsis thaliana unknown protein (At2g34510) mRNA, complete cds Length = 1206 Score = 46.1 bits (23), Expect = 0.11 Identities = 61/74 (82%) Strand = Plus / Plus Query: 30 tttangaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggcc 89 |||| |||||||||||||||||| || || || || || |||||| ||||| || | ||| Sbjct: 535 tttaagaaccctggcatggaggatgatcctacttgtggacctatcattgacgacattgcc 594 Query: 90 atcaagaagctctt 103 | ||||||||||| Sbjct: 595 gttaagaagctctt 608
>emb|BX820463.1|CNS0A9JU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH37ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 896 Score = 46.1 bits (23), Expect = 0.11 Identities = 61/74 (82%) Strand = Plus / Plus Query: 30 tttangaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggcc 89 |||| |||||||||||||||||| || || || || || |||||| ||||| || | ||| Sbjct: 535 tttaagaaccctggcatggaggatgatcctacttgtggacctatcattgacgacattgcc 594 Query: 90 atcaagaagctctt 103 | ||||||||||| Sbjct: 595 gttaagaagctctt 608
>emb|BX819750.1|CNS0A9H2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS22ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1393 Score = 46.1 bits (23), Expect = 0.11 Identities = 61/74 (82%) Strand = Plus / Plus Query: 30 tttangaaccctggcatggaggacgacccaacctgcgggcctatccttgacaacgtggcc 89 |||| |||||||||||||||||| || || || || || |||||| ||||| || | ||| Sbjct: 609 tttaagaaccctggcatggaggatgatcctacttgtggacctatcattgacgacattgcc 668 Query: 90 atcaagaagctctt 103 | ||||||||||| Sbjct: 669 gttaagaagctctt 682
>gb|BT014360.1| Lycopersicon esculentum clone 133646R, mRNA sequence Length = 1505 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 138 aatggagactttgaggaggggccatggatgttt 170 |||||||||||||| || || |||||||||||| Sbjct: 665 aatggagactttgaagaaggtccatggatgttt 697
>gb|AC125576.4| Rattus norvegicus 18 BAC CH230-9F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 237754 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 acacttgttccccaggggaag 306 ||||||||||||||||||||| Sbjct: 34576 acacttgttccccaggggaag 34556
>ref|NM_202209.1| Arabidopsis thaliana unknown protein AT1G29980 transcript variant AT1G29980.2 mRNA, complete cds Length = 1473 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 atggcattcgcaggcgaccaggcccagaactt 470 |||||||||||||| || ||||| |||||||| Sbjct: 1073 atggcattcgcaggtgatcaggcgcagaactt 1104
>ref|NM_102738.2| Arabidopsis thaliana unknown protein AT1G29980 transcript variant AT1G29980.1 mRNA, complete cds Length = 1480 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 atggcattcgcaggcgaccaggcccagaactt 470 |||||||||||||| || ||||| |||||||| Sbjct: 1078 atggcattcgcaggtgatcaggcgcagaactt 1109
>ref|XM_476066.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 gacaacgtggccatcaagaagctc 101 ||||||| |||||||||||||||| Sbjct: 1033 gacaacgaggccatcaagaagctc 1056
>gb|AF059580.1| Murine genomic DNA; partially digested Sau3A fragment, cloned into cosmid vector pEMBLcos2, complete sequence Length = 36326 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tgagacgacccctcagaagg 376 |||||||||||||||||||| Sbjct: 30228 tgagacgacccctcagaagg 30209
>gb|AF411058.1| Homo sapiens clone BAC_22700 cytotoxic T-lymphocyte-associated protein 4 (CTLA4) and inducible T-cell co-stimulator (ICOS) genes, complete cds; and endogenous virus HERV-H, partial sequence Length = 181654 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 caaagcaaaggagaacatgg 132 |||||||||||||||||||| Sbjct: 93107 caaagcaaaggagaacatgg 93126
>ref|XM_322996.1| Neurospora crassa OR74A hypothetical protein (NCU03695.1) partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtcaatggagactttgagg 153 |||||||||||||||||||| Sbjct: 786 ggtcaatggagactttgagg 805
>ref|XM_956378.1| Neurospora crassa OR74A hypothetical protein (NCU03695.1) partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtcaatggagactttgagg 153 |||||||||||||||||||| Sbjct: 786 ggtcaatggagactttgagg 805
>gb|AC107661.10| Mus musculus chromosome 10, clone RP23-174M1, complete sequence Length = 187233 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggagaacatggtggtcaatg 141 |||||||||||||||||||| Sbjct: 32801 ggagaacatggtggtcaatg 32782
>emb|AL451014.1|NCB9B15 Neurospora crassa DNA linkage group V BAC clone B9B15 Length = 81650 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtcaatggagactttgagg 153 |||||||||||||||||||| Sbjct: 38152 ggtcaatggagactttgagg 38171
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 gacaacgtggccatcaagaagctc 101 ||||||| |||||||||||||||| Sbjct: 110006 gacaacgaggccatcaagaagctc 109983
>dbj|AK154395.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630026P10 product:leucine-rich repeat kinase 1, full insert sequence Length = 2970 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 100 tcttctcccccgacaaagcaaaggagaa 127 |||||||||||||||||| |||||||| Sbjct: 2442 tcttctcccccgacaaagggaaggagaa 2469
>gb|U91744.3|LMU91744 Leishmania major putative aurora/Ipl1p-like protein kinase (Lmairk) gene, complete cds Length = 2059 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cgtggccatcaagaagctct 102 |||||||||||||||||||| Sbjct: 749 cgtggccatcaagaagctct 768
>gb|AC137524.4| Mus musculus BAC clone RP23-55M20 from chromosome 7, complete sequence Length = 253824 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tgtttccaaacacaagcttc 185 |||||||||||||||||||| Sbjct: 62570 tgtttccaaacacaagcttc 62589
>gb|AY045649.1| Arabidopsis thaliana At1g29980/T1P2_9 mRNA, complete cds Length = 1481 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 atggcattcgcaggcgaccaggcccagaactt 470 |||||||||||||| || ||||| |||||||| Sbjct: 1077 atggcattcgcaggtgatcaggcgcagaactt 1108
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 gacaacgtggccatcaagaagctc 101 ||||||| |||||||||||||||| Sbjct: 4742001 gacaacgaggccatcaagaagctc 4741978
>emb|BX816716.1|CNS0AD75 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1402 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 atggcattcgcaggcgaccaggcccagaactt 470 |||||||||||||| || ||||| |||||||| Sbjct: 1066 atggcattcgcaggtgatcaggcgcagaactt 1097
>emb|BX816631.1|CNS0AAOM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1401 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 atggcattcgcaggcgaccaggcccagaactt 470 |||||||||||||| || ||||| |||||||| Sbjct: 1074 atggcattcgcaggtgatcaggcgcagaactt 1105
>gb|AC022455.5|AC022455 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence Length = 82053 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 439 atggcattcgcaggcgaccaggcccagaactt 470 |||||||||||||| || ||||| |||||||| Sbjct: 25556 atggcattcgcaggtgatcaggcgcagaactt 25525
>gb|AC010138.6| Homo sapiens BAC clone RP11-175H4 from 2, complete sequence Length = 160970 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 caaagcaaaggagaacatgg 132 |||||||||||||||||||| Sbjct: 107047 caaagcaaaggagaacatgg 107066
>gb|BC080819.1| Mus musculus leucine-rich repeat kinase 1, mRNA (cDNA clone IMAGE:30143856), partial cds Length = 2113 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 100 tcttctcccccgacaaagcaaaggagaa 127 |||||||||||||||||| |||||||| Sbjct: 1550 tcttctcccccgacaaagggaaggagaa 1577
>emb|AJ535718.1|HSA535718 Homo sapiens partial ICOS gene for inducible costimulator protein Length = 186585 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 caaagcaaaggagaacatgg 132 |||||||||||||||||||| Sbjct: 151644 caaagcaaaggagaacatgg 151625
>dbj|AK129441.1| Mus musculus mRNA for mKIAA1790 protein Length = 6864 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 100 tcttctcccccgacaaagcaaaggagaa 127 |||||||||||||||||| |||||||| Sbjct: 6336 tcttctcccccgacaaagggaaggagaa 6363
>gb|AF225900.1|AF225900 Homo sapiens PAC clone p61e2, complete sequence Length = 94645 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 caaagcaaaggagaacatgg 132 |||||||||||||||||||| Sbjct: 77879 caaagcaaaggagaacatgg 77898
>gb|AC115041.15| Mus musculus chromosome 3, clone RP24-285A14, complete sequence Length = 149484 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ggcaaggagggcatcatctc 347 |||||||||||||||||||| Sbjct: 60459 ggcaaggagggcatcatctc 60440
>gb|AC132328.3| Mus musculus BAC clone RP24-195C6 from 10, complete sequence Length = 146064 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ggagaacatggtggtcaatg 141 |||||||||||||||||||| Sbjct: 19440 ggagaacatggtggtcaatg 19459
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 gacaacgtggccatcaagaagctc 101 ||||||| |||||||||||||||| Sbjct: 14409 gacaacgaggccatcaagaagctc 14386
>gb|AC163442.16| Mus musculus chromosome 8, clone RP23-441L19, complete sequence Length = 214994 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tgagacgacccctcagaagg 376 |||||||||||||||||||| Sbjct: 125784 tgagacgacccctcagaagg 125765 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,799,714 Number of Sequences: 3902068 Number of extensions: 2799714 Number of successful extensions: 54906 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54780 Number of HSP's gapped (non-prelim): 111 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
