| Clone Name | bags5e24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ577393.1|TAE577393 Triticum aestivum partial mRNA for hypothetical protein Length = 450 Score = 841 bits (424), Expect = 0.0 Identities = 439/444 (98%) Strand = Plus / Plus Query: 15 tgacttgggtggagcaaagagttgctgtcagagctttggggcatttggctacatacccta 74 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 tgacctgggtggagcaaagagttgctgtcagagctttggggcatttggctacatacccta 64 Query: 75 gtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattcaacttgcct 134 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 gtacatttcctgctgttgctgatcatggagaagtgcttgaacttgcaattcaacttgcct 124 Query: 135 caagctctctagaaattgtgtactctcacttttaccaattcgtagatcggagacttggct 194 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 125 caagctctctagaaattgtgtactctcatttttaccaattcgtagatcggagacttggct 184 Query: 195 accactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagccg 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 185 accactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagctg 244 Query: 255 aggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattta 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 aggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattta 304 Query: 315 agcctgagtttctccatgatatctgcaagcctgaatttctagctaagttacctggtatgt 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 agcctgagtttctccatgatatctgcaagcctgaatttctagctaagttacctggtatgt 364 Query: 375 ggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaatctgcc 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 ggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaatctgcc 424 Query: 435 agagcaagcttggccgaggtcatg 458 ||||||||||||| |||||||||| Sbjct: 425 agagcaagcttggacgaggtcatg 448
>ref|XM_475237.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1806 Score = 617 bits (311), Expect = e-173 Identities = 569/655 (86%) Strand = Plus / Plus Query: 6 gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65 |||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 395 gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 454 Query: 66 cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125 |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| |||| Sbjct: 455 catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 514 Query: 126 aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185 ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || | Sbjct: 515 aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 574 Query: 186 gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245 | |||||||||||||||| ||||| ||||| || |||||||||| ||||||||||||| Sbjct: 575 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 634 Query: 246 gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305 | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 635 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 694 Query: 306 ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365 | ||||||||| |||| |||||||||||||| |||||| |||| ||||||| ||||||| Sbjct: 695 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 754 Query: 366 ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425 |||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct: 755 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 814 Query: 426 caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485 | |||||||||||||||||||||||||| ||||||||||||||| || |||| | || | Sbjct: 815 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 874 Query: 486 ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545 || | ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 875 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 934 Query: 546 tctggttagtgcaggatcctggcacgtatcataaggttatagataaaatcgccccgacac 605 | ||||| ||||||||| | || | ||||||||| ||||||| | | ||| | |||| Sbjct: 935 tttggttggtgcaggattcaaatacatgtcataaggtaatagatagagttgcctcaacac 994 Query: 606 tgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660 |||||||||||||| |||| || | ||||||||||| |||| || |||||||| Sbjct: 995 tgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 1049
>dbj|AK103376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127B22, full insert sequence Length = 2943 Score = 617 bits (311), Expect = e-173 Identities = 569/655 (86%) Strand = Plus / Plus Query: 6 gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65 |||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 824 gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 883 Query: 66 cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125 |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| |||| Sbjct: 884 catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 943 Query: 126 aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185 ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || | Sbjct: 944 aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 1003 Query: 186 gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245 | |||||||||||||||| ||||| ||||| || |||||||||| ||||||||||||| Sbjct: 1004 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 1063 Query: 246 gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305 | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 1064 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 1123 Query: 306 ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365 | ||||||||| |||| |||||||||||||| |||||| |||| ||||||| ||||||| Sbjct: 1124 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 1183 Query: 366 ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425 |||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct: 1184 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 1243 Query: 426 caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485 | |||||||||||||||||||||||||| ||||||||||||||| || |||| | || | Sbjct: 1244 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 1303 Query: 486 ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545 || | ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1304 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 1363 Query: 546 tctggttagtgcaggatcctggcacgtatcataaggttatagataaaatcgccccgacac 605 | ||||| ||||||||| | || | ||||||||| ||||||| | | ||| | |||| Sbjct: 1364 tttggttggtgcaggattcaaatacatgtcataaggtaatagatagagttgcctcaacac 1423 Query: 606 tgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660 |||||||||||||| |||| || | ||||||||||| |||| || |||||||| Sbjct: 1424 tgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 1478
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092E21, complete sequence Length = 132649 Score = 597 bits (301), Expect = e-167 Identities = 493/557 (88%) Strand = Plus / Plus Query: 6 gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65 |||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 65037 gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 65096 Query: 66 cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125 |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| |||| Sbjct: 65097 catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 65156 Query: 126 aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185 ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || | Sbjct: 65157 aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 65216 Query: 186 gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245 | |||||||||||||||| ||||| ||||| || |||||||||| ||||||||||||| Sbjct: 65217 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 65276 Query: 246 gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305 | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 65277 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 65336 Query: 306 ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365 | ||||||||| |||| |||||||||||||| |||||| |||| ||||||| ||||||| Sbjct: 65337 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 65396 Query: 366 ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425 |||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct: 65397 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 65456 Query: 426 caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485 | |||||||||||||||||||||||||| ||||||||||||||| || |||| | || | Sbjct: 65457 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 65516 Query: 486 ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545 || | ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 65517 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 65576 Query: 546 tctggttagtgcaggat 562 | ||||| ||||||||| Sbjct: 65577 tttggttggtgcaggat 65593 Score = 46.1 bits (23), Expect = 0.15 Identities = 50/59 (84%) Strand = Plus / Plus Query: 602 acactgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660 |||||||||||||||||| |||| || | ||||||||||| |||| || |||||||| Sbjct: 66104 acactgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 66162
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 597 bits (301), Expect = e-167 Identities = 493/557 (88%) Strand = Plus / Plus Query: 6 gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65 |||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 20521558 gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 20521617 Query: 66 cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125 |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| |||| Sbjct: 20521618 catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 20521677 Query: 126 aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185 ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || | Sbjct: 20521678 aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 20521737 Query: 186 gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245 | |||||||||||||||| ||||| ||||| || |||||||||| ||||||||||||| Sbjct: 20521738 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 20521797 Query: 246 gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305 | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 20521798 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 20521857 Query: 306 ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365 | ||||||||| |||| |||||||||||||| |||||| |||| ||||||| ||||||| Sbjct: 20521858 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 20521917 Query: 366 ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425 |||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct: 20521918 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 20521977 Query: 426 caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485 | |||||||||||||||||||||||||| ||||||||||||||| || |||| | || | Sbjct: 20521978 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 20522037 Query: 486 ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545 || | ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 20522038 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 20522097 Query: 546 tctggttagtgcaggat 562 | ||||| ||||||||| Sbjct: 20522098 tttggttggtgcaggat 20522114 Score = 46.1 bits (23), Expect = 0.15 Identities = 50/59 (84%) Strand = Plus / Plus Query: 602 acactgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660 |||||||||||||||||| |||| || | ||||||||||| |||| || |||||||| Sbjct: 20522625 acactgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 20522683
>ref|NM_121058.2| Arabidopsis thaliana unknown protein AT5G10200 mRNA, complete cds Length = 2517 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 370 tatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaat 429 ||||||||| |||||||||||||||||||| ||||||||| | ||||| || |||||||| Sbjct: 1041 tatgtggggaggacttgtgaatgagaactcgcctgctggtatcggtttgcttagaacaat 1100 Query: 430 ctg 432 ||| Sbjct: 1101 ctg 1103 Score = 75.8 bits (38), Expect = 2e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 194 taccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagcc 253 ||||| |||||||| |||||||| || ||||| |||| || ||||| || | ||||| Sbjct: 865 taccattgtgatctgcttacacgaggcatgggaggtgtagagatggagtcgagaaaagca 924 Query: 254 gaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattt 313 ||||||||||| ||||| ||||||| |||||| | |||||||||||||| || || ||| Sbjct: 925 gaggaatgggcgagccagttgcagtgttggtctcttcagctcataaactgtttcgctttt 984 Query: 314 aagcctgagtttct 327 || || |||||||| Sbjct: 985 aaacccgagtttct 998 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 2 ttaagaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttg 61 |||||||||||||| |||||||| || || ||||| || || | ||||| |||||||| Sbjct: 673 ttaagaggtaggcttacttgggttgaacagagagtggcggttcgtgctttagggcattta 732 Query: 62 gctacataccctagtacattccctgctgttgctgatcatggaga 105 ||||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct: 733 gctacttacccgagtacttttcccgctgttgcggatcacggaga 776 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 500 gctcgttcttcagatgactggcaatacatggccattgattgtctactctggtt 552 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct: 1171 gctcgttcttctgatgattggcagtatatggcgattgaatgtcttctttggtt 1223
>emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18D22 (ESSA project) Length = 57180 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 370 tatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaat 429 ||||||||| |||||||||||||||||||| ||||||||| | ||||| || |||||||| Sbjct: 7934 tatgtggggaggacttgtgaatgagaactcgcctgctggtatcggtttgcttagaacaat 7993 Query: 430 ctg 432 ||| Sbjct: 7994 ctg 7996 Score = 75.8 bits (38), Expect = 2e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 194 taccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagcc 253 ||||| |||||||| |||||||| || ||||| |||| || ||||| || | ||||| Sbjct: 7758 taccattgtgatctgcttacacgaggcatgggaggtgtagagatggagtcgagaaaagca 7817 Query: 254 gaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattt 313 ||||||||||| ||||| ||||||| |||||| | |||||||||||||| || || ||| Sbjct: 7818 gaggaatgggcgagccagttgcagtgttggtctcttcagctcataaactgtttcgctttt 7877 Query: 314 aagcctgagtttct 327 || || |||||||| Sbjct: 7878 aaacccgagtttct 7891 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 2 ttaagaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttg 61 |||||||||||||| |||||||| || || ||||| || || | ||||| |||||||| Sbjct: 7566 ttaagaggtaggcttacttgggttgaacagagagtggcggttcgtgctttagggcattta 7625 Query: 62 gctacataccctagtacattccctgctgttgctgatcatggaga 105 ||||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct: 7626 gctacttacccgagtacttttcccgctgttgcggatcacggaga 7669 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 500 gctcgttcttcagatgactggcaatacatggccattgattgtctactctggtt 552 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct: 8064 gctcgttcttctgatgattggcagtatatggcgattgaatgtcttctttggtt 8116
>emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project) Length = 80088 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 370 tatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaat 429 ||||||||| |||||||||||||||||||| ||||||||| | ||||| || |||||||| Sbjct: 67836 tatgtggggaggacttgtgaatgagaactcgcctgctggtatcggtttgcttagaacaat 67895 Query: 430 ctg 432 ||| Sbjct: 67896 ctg 67898 Score = 75.8 bits (38), Expect = 2e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 194 taccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagcc 253 ||||| |||||||| |||||||| || ||||| |||| || ||||| || | ||||| Sbjct: 67660 taccattgtgatctgcttacacgaggcatgggaggtgtagagatggagtcgagaaaagca 67719 Query: 254 gaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattt 313 ||||||||||| ||||| ||||||| |||||| | |||||||||||||| || || ||| Sbjct: 67720 gaggaatgggcgagccagttgcagtgttggtctcttcagctcataaactgtttcgctttt 67779 Query: 314 aagcctgagtttct 327 || || |||||||| Sbjct: 67780 aaacccgagtttct 67793 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 2 ttaagaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttg 61 |||||||||||||| |||||||| || || ||||| || || | ||||| |||||||| Sbjct: 67468 ttaagaggtaggcttacttgggttgaacagagagtggcggttcgtgctttagggcattta 67527 Query: 62 gctacataccctagtacattccctgctgttgctgatcatggaga 105 ||||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct: 67528 gctacttacccgagtacttttcccgctgttgcggatcacggaga 67571 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 500 gctcgttcttcagatgactggcaatacatggccattgattgtctactctggtt 552 ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct: 67966 gctcgttcttctgatgattggcagtatatggcgattgaatgtcttctttggtt 68018
>dbj|AK058230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B05, full insert sequence Length = 1430 Score = 54.0 bits (27), Expect = 6e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 574 tcataaggttatagataaaatcgccccgacactgatagatttagcagatatttccacact 633 ||||||||| ||||||| | | ||| | |||||||||||||||||| |||| || | || Sbjct: 25 tcataaggtaatagatagagttgcctcaacactgatagatttagcaaatatctcaatgct 84 Query: 634 cggtgattacaaaaggctaggtgacac 660 ||||||||| |||| || |||||||| Sbjct: 85 cggtgattataaaaaacttggtgacac 111
>ref|NM_123678.1| Arabidopsis thaliana unknown protein AT5G43120 mRNA, complete cds Length = 1767 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 248 aaagccgaggaatgggctagccaactgcagtgctggtc 285 ||||||||||||||||| |||||||| || |||||||| Sbjct: 685 aaagccgaggaatgggcaagccaactccaatgctggtc 722
>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4 Length = 79046 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 248 aaagccgaggaatgggctagccaactgcagtgctggtc 285 ||||||||||||||||| |||||||| || |||||||| Sbjct: 59225 aaagccgaggaatgggcaagccaactccaatgctggtc 59262
>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence Length = 110038 Score = 48.1 bits (24), Expect = 0.037 Identities = 57/68 (83%) Strand = Plus / Plus Query: 5 agaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggct 64 ||||||||||| || ||||||||||| ||||| || ||| | ||| | |||||||| ||| Sbjct: 68573 agaggtaggctcacctgggtggagcagagagtggcggtccgcgctctagggcatttagct 68632 Query: 65 acataccc 72 || ||||| Sbjct: 68633 acttaccc 68640
>gb|AC124356.4| Mus musculus BAC clone RP24-484D12 from chromosome 12, complete sequence Length = 161982 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 caacttgcctcaagctctcta 145 ||||||||||||||||||||| Sbjct: 49587 caacttgcctcaagctctcta 49607
>emb|CR956381.6| Pig DNA sequence from clone CH242-248C21 on chromosome 17, complete sequence Length = 58781 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 ttggccgaggtcatgttgctaata 467 ||||||||||||||| |||||||| Sbjct: 22348 ttggccgaggtcatgctgctaata 22371
>emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chromosome 6 Contains three pseudogenes similar to 43kD small nuclear RNA activating complex polypeptide 1 (SNAPC1) (SNAP43 PTFGAMMA PTFgamma), a novel protein similar to UL16 binding protein 2 (ULBP2), the 3' end of a novel gene, a novel gene, the ULBP2 gene for UL16 binding protein 2 (RAET1H ALCAN-alpha) and three CpG islands, complete sequence Length = 46941 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgggtggtgctgaaatggaa 241 |||||||||||||||||||| Sbjct: 11331 tgggtggtgctgaaatggaa 11350
>emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C13 on chromosome 6q25.2-26 Contains the 5' end of a novel gene, a hypothetical protein PNAS-131 pseudogene and a CpG island, complete sequence Length = 150336 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cacctgctggtgttggttta 418 |||||||||||||||||||| Sbjct: 35998 cacctgctggtgttggttta 35979
>gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, complete sequence Length = 193245 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 aagcctgagtttctccatga 333 |||||||||||||||||||| Sbjct: 145502 aagcctgagtttctccatga 145521
>ref|NM_057184.1| Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 6 (Chrna6), mRNA Length = 1760 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 511 agatgactggcaatacatggccat 534 |||||||||| ||||||||||||| Sbjct: 1534 agatgactggaaatacatggccat 1557
>ref|XM_579601.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_057184 (LOC497707), mRNA Length = 1755 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 511 agatgactggcaatacatggccat 534 |||||||||| ||||||||||||| Sbjct: 1534 agatgactggaaatacatggccat 1557
>gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, complete sequence Length = 211658 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 aagcctgagtttctccatga 333 |||||||||||||||||||| Sbjct: 193467 aagcctgagtttctccatga 193448
>gb|L08227.1|RATNARA6S Rat nicotinic acetylcholine receptor alpha 6 subunit mRNA sequence Length = 1760 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 511 agatgactggcaatacatggccat 534 |||||||||| ||||||||||||| Sbjct: 1534 agatgactggaaatacatggccat 1557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,442,189 Number of Sequences: 3902068 Number of extensions: 5442189 Number of successful extensions: 96711 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96637 Number of HSP's gapped (non-prelim): 74 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)