ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ577393.1|TAE577393 Triticum aestivum partial mRNA for hypo... 841 0.0
2ref|XM_475237.1| Oryza sativa (japonica cultivar-group), predic... 617 e-173
3dbj|AK103376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 617 e-173
4gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome... 597 e-167
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 597 e-167
6ref|NM_121058.2| Arabidopsis thaliana unknown protein AT5G10200 ... 78 4e-11
7emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, B... 78 4e-11
8emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, B... 78 4e-11
9dbj|AK058230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
10ref|NM_123678.1| Arabidopsis thaliana unknown protein AT5G43120 ... 52 0.002
11dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
12gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08,... 48 0.037
13gb|AC124356.4| Mus musculus BAC clone RP24-484D12 from chromosom... 42 2.3
14emb|CR956381.6| Pig DNA sequence from clone CH242-248C21 on chro... 40 9.0
15emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chro... 40 9.0
16emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C... 40 9.0
17gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, co... 40 9.0
18ref|NM_057184.1| Rattus norvegicus cholinergic receptor, nicotin... 40 9.0
19ref|XM_579601.1| PREDICTED: Rattus norvegicus hypothetical gene ... 40 9.0
20gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, co... 40 9.0
21gb|L08227.1|RATNARA6S Rat nicotinic acetylcholine receptor alpha... 40 9.0

>emb|AJ577393.1|TAE577393 Triticum aestivum partial mRNA for hypothetical protein
          Length = 450

 Score =  841 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  tgacttgggtggagcaaagagttgctgtcagagctttggggcatttggctacatacccta 74
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   tgacctgggtggagcaaagagttgctgtcagagctttggggcatttggctacatacccta 64

                                                                       
Query: 75  gtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattcaacttgcct 134
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gtacatttcctgctgttgctgatcatggagaagtgcttgaacttgcaattcaacttgcct 124

                                                                       
Query: 135 caagctctctagaaattgtgtactctcacttttaccaattcgtagatcggagacttggct 194
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 125 caagctctctagaaattgtgtactctcatttttaccaattcgtagatcggagacttggct 184

                                                                       
Query: 195 accactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagccg 254
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 185 accactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagctg 244

                                                                       
Query: 255 aggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattta 304

                                                                       
Query: 315 agcctgagtttctccatgatatctgcaagcctgaatttctagctaagttacctggtatgt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcctgagtttctccatgatatctgcaagcctgaatttctagctaagttacctggtatgt 364

                                                                       
Query: 375 ggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaatctgcc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaatctgcc 424

                                   
Query: 435 agagcaagcttggccgaggtcatg 458
           ||||||||||||| ||||||||||
Sbjct: 425 agagcaagcttggacgaggtcatg 448



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>ref|XM_475237.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score =  617 bits (311), Expect = e-173
 Identities = 569/655 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65
            |||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 395  gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 454

                                                                        
Query: 66   cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125
            |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 455  catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 514

                                                                        
Query: 126  aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185
            ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 515  aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 574

                                                                        
Query: 186  gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245
            |  |||||||||||||||| ||||| ||||| || ||||||||||  |||||||||||||
Sbjct: 575  ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 634

                                                                        
Query: 246  gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305
            | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 635  gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 694

                                                                        
Query: 306  ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365
            | ||||||||| |||| |||||||||||||| |||||| |||| |||||||  |||||||
Sbjct: 695  tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 754

                                                                        
Query: 366  ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425
            |||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 755  ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 814

                                                                        
Query: 426  caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485
            | |||||||||||||||||||||||||| ||||||||||||||| || ||||  | || |
Sbjct: 815  ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 874

                                                                        
Query: 486  ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545
            || | ||||||||||| |||||||||||||||||||||||||||||  |||||||| |||
Sbjct: 875  ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 934

                                                                        
Query: 546  tctggttagtgcaggatcctggcacgtatcataaggttatagataaaatcgccccgacac 605
            | ||||| ||||||||| |    || | ||||||||| ||||||| | | ||| | ||||
Sbjct: 935  tttggttggtgcaggattcaaatacatgtcataaggtaatagatagagttgcctcaacac 994

                                                                   
Query: 606  tgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660
            |||||||||||||| |||| || |  ||||||||||| ||||  || ||||||||
Sbjct: 995  tgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 1049



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>dbj|AK103376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127B22, full
            insert sequence
          Length = 2943

 Score =  617 bits (311), Expect = e-173
 Identities = 569/655 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65
            |||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 824  gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 883

                                                                        
Query: 66   cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125
            |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 884  catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 943

                                                                        
Query: 126  aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185
            ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 944  aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 1003

                                                                        
Query: 186  gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245
            |  |||||||||||||||| ||||| ||||| || ||||||||||  |||||||||||||
Sbjct: 1004 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 1063

                                                                        
Query: 246  gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305
            | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 1064 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 1123

                                                                        
Query: 306  ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365
            | ||||||||| |||| |||||||||||||| |||||| |||| |||||||  |||||||
Sbjct: 1124 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 1183

                                                                        
Query: 366  ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425
            |||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 1184 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 1243

                                                                        
Query: 426  caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485
            | |||||||||||||||||||||||||| ||||||||||||||| || ||||  | || |
Sbjct: 1244 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 1303

                                                                        
Query: 486  ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545
            || | ||||||||||| |||||||||||||||||||||||||||||  |||||||| |||
Sbjct: 1304 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 1363

                                                                        
Query: 546  tctggttagtgcaggatcctggcacgtatcataaggttatagataaaatcgccccgacac 605
            | ||||| ||||||||| |    || | ||||||||| ||||||| | | ||| | ||||
Sbjct: 1364 tttggttggtgcaggattcaaatacatgtcataaggtaatagatagagttgcctcaacac 1423

                                                                   
Query: 606  tgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660
            |||||||||||||| |||| || |  ||||||||||| ||||  || ||||||||
Sbjct: 1424 tgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 1478



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>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0092E21, complete sequence
          Length = 132649

 Score =  597 bits (301), Expect = e-167
 Identities = 493/557 (88%)
 Strand = Plus / Plus

                                                                         
Query: 6     gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65
             |||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 65037 gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 65096

                                                                         
Query: 66    cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125
             |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 65097 catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 65156

                                                                         
Query: 126   aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185
             ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 65157 aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 65216

                                                                         
Query: 186   gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245
             |  |||||||||||||||| ||||| ||||| || ||||||||||  |||||||||||||
Sbjct: 65217 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 65276

                                                                         
Query: 246   gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305
             | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 65277 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 65336

                                                                         
Query: 306   ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365
             | ||||||||| |||| |||||||||||||| |||||| |||| |||||||  |||||||
Sbjct: 65337 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 65396

                                                                         
Query: 366   ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425
             |||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 65397 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 65456

                                                                         
Query: 426   caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485
             | |||||||||||||||||||||||||| ||||||||||||||| || ||||  | || |
Sbjct: 65457 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 65516

                                                                         
Query: 486   ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545
             || | ||||||||||| |||||||||||||||||||||||||||||  |||||||| |||
Sbjct: 65517 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 65576

                              
Query: 546   tctggttagtgcaggat 562
             | ||||| |||||||||
Sbjct: 65577 tttggttggtgcaggat 65593



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 602   acactgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660
             |||||||||||||||||| |||| || |  ||||||||||| ||||  || ||||||||
Sbjct: 66104 acactgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 66162



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  597 bits (301), Expect = e-167
 Identities = 493/557 (88%)
 Strand = Plus / Plus

                                                                            
Query: 6        gaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggcta 65
                |||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 20521558 gaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggcta 20521617

                                                                            
Query: 66       cataccctagtacattccctgctgttgctgatcatggagaagtgcttgaacttgcaattc 125
                |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 20521618 catatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattc 20521677

                                                                            
Query: 126      aacttgcctcaagctctctagaaattgtgtactctcacttttaccaattcgtagatcgga 185
                ||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 20521678 aacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaa 20521737

                                                                            
Query: 186      gacttggctaccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctc 245
                |  |||||||||||||||| ||||| ||||| || ||||||||||  |||||||||||||
Sbjct: 20521738 ggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctc 20521797

                                                                            
Query: 246      gtaaagccgaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgct 305
                | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 20521798 gcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgct 20521857

                                                                            
Query: 306      ttgcatttaagcctgagtttctccatgatatctgcaagcctgaatttctagctaagttac 365
                | ||||||||| |||| |||||||||||||| |||||| |||| |||||||  |||||||
Sbjct: 20521858 tcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttac 20521917

                                                                            
Query: 366      ctggtatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaa 425
                |||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 20521918 ctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaa 20521977

                                                                            
Query: 426      caatctgccagagcaagcttggccgaggtcatgttgctaatatttctggtgtcatcgagg 485
                | |||||||||||||||||||||||||| ||||||||||||||| || ||||  | || |
Sbjct: 20521978 ctatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaag 20522037

                                                                            
Query: 486      ctttatgcaacattgctcgttcttcagatgactggcaatacatggccattgattgtctac 545
                || | ||||||||||| |||||||||||||||||||||||||||||  |||||||| |||
Sbjct: 20522038 ctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttac 20522097

                                 
Query: 546      tctggttagtgcaggat 562
                | ||||| |||||||||
Sbjct: 20522098 tttggttggtgcaggat 20522114



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 602      acactgatagatttagcagatatttccacactcggtgattacaaaaggctaggtgacac 660
                |||||||||||||||||| |||| || |  ||||||||||| ||||  || ||||||||
Sbjct: 20522625 acactgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacac 20522683



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>ref|NM_121058.2| Arabidopsis thaliana unknown protein AT5G10200 mRNA, complete cds
          Length = 2517

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                        
Query: 370  tatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaat 429
            ||||||||| |||||||||||||||||||| ||||||||| | ||||| || ||||||||
Sbjct: 1041 tatgtggggaggacttgtgaatgagaactcgcctgctggtatcggtttgcttagaacaat 1100

               
Query: 430  ctg 432
            |||
Sbjct: 1101 ctg 1103



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 110/134 (82%)
 Strand = Plus / Plus

                                                                       
Query: 194 taccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagcc 253
           ||||| |||||||| |||||||| || ||||| ||||  || ||||| ||  | ||||| 
Sbjct: 865 taccattgtgatctgcttacacgaggcatgggaggtgtagagatggagtcgagaaaagca 924

                                                                       
Query: 254 gaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattt 313
           ||||||||||| |||||  ||||||| |||||| | |||||||||||||| || || |||
Sbjct: 925 gaggaatgggcgagccagttgcagtgttggtctcttcagctcataaactgtttcgctttt 984

                         
Query: 314 aagcctgagtttct 327
           || || ||||||||
Sbjct: 985 aaacccgagtttct 998



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttaagaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttg 61
           |||||||||||||| |||||||| || || ||||| || ||  | ||||| |||||||| 
Sbjct: 673 ttaagaggtaggcttacttgggttgaacagagagtggcggttcgtgctttagggcattta 732

                                                       
Query: 62  gctacataccctagtacattccctgctgttgctgatcatggaga 105
           ||||| ||||| ||||| || || |||||||| ||||| |||||
Sbjct: 733 gctacttacccgagtacttttcccgctgttgcggatcacggaga 776



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 500  gctcgttcttcagatgactggcaatacatggccattgattgtctactctggtt 552
            ||||||||||| ||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct: 1171 gctcgttcttctgatgattggcagtatatggcgattgaatgtcttctttggtt 1223



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>emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18D22 (ESSA
            project)
          Length = 57180

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                        
Query: 370  tatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaat 429
            ||||||||| |||||||||||||||||||| ||||||||| | ||||| || ||||||||
Sbjct: 7934 tatgtggggaggacttgtgaatgagaactcgcctgctggtatcggtttgcttagaacaat 7993

               
Query: 430  ctg 432
            |||
Sbjct: 7994 ctg 7996



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 110/134 (82%)
 Strand = Plus / Plus

                                                                        
Query: 194  taccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagcc 253
            ||||| |||||||| |||||||| || ||||| ||||  || ||||| ||  | ||||| 
Sbjct: 7758 taccattgtgatctgcttacacgaggcatgggaggtgtagagatggagtcgagaaaagca 7817

                                                                        
Query: 254  gaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattt 313
            ||||||||||| |||||  ||||||| |||||| | |||||||||||||| || || |||
Sbjct: 7818 gaggaatgggcgagccagttgcagtgttggtctcttcagctcataaactgtttcgctttt 7877

                          
Query: 314  aagcctgagtttct 327
            || || ||||||||
Sbjct: 7878 aaacccgagtttct 7891



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Plus

                                                                        
Query: 2    ttaagaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttg 61
            |||||||||||||| |||||||| || || ||||| || ||  | ||||| |||||||| 
Sbjct: 7566 ttaagaggtaggcttacttgggttgaacagagagtggcggttcgtgctttagggcattta 7625

                                                        
Query: 62   gctacataccctagtacattccctgctgttgctgatcatggaga 105
            ||||| ||||| ||||| || || |||||||| ||||| |||||
Sbjct: 7626 gctacttacccgagtacttttcccgctgttgcggatcacggaga 7669



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 500  gctcgttcttcagatgactggcaatacatggccattgattgtctactctggtt 552
            ||||||||||| ||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct: 8064 gctcgttcttctgatgattggcagtatatggcgattgaatgtcttctttggtt 8116



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>emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project)
          Length = 80088

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 370   tatgtggggtggacttgtgaatgagaactcacctgctggtgttggtttactaagaacaat 429
             ||||||||| |||||||||||||||||||| ||||||||| | ||||| || ||||||||
Sbjct: 67836 tatgtggggaggacttgtgaatgagaactcgcctgctggtatcggtttgcttagaacaat 67895

                
Query: 430   ctg 432
             |||
Sbjct: 67896 ctg 67898



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 110/134 (82%)
 Strand = Plus / Plus

                                                                         
Query: 194   taccactgtgatcttcttacacgtggtatgggtggtgctgaaatggaatctcgtaaagcc 253
             ||||| |||||||| |||||||| || ||||| ||||  || ||||| ||  | ||||| 
Sbjct: 67660 taccattgtgatctgcttacacgaggcatgggaggtgtagagatggagtcgagaaaagca 67719

                                                                         
Query: 254   gaggaatgggctagccaactgcagtgctggtctttgcagctcataaactgctttgcattt 313
             ||||||||||| |||||  ||||||| |||||| | |||||||||||||| || || |||
Sbjct: 67720 gaggaatgggcgagccagttgcagtgttggtctcttcagctcataaactgtttcgctttt 67779

                           
Query: 314   aagcctgagtttct 327
             || || ||||||||
Sbjct: 67780 aaacccgagtttct 67793



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Plus

                                                                         
Query: 2     ttaagaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttg 61
             |||||||||||||| |||||||| || || ||||| || ||  | ||||| |||||||| 
Sbjct: 67468 ttaagaggtaggcttacttgggttgaacagagagtggcggttcgtgctttagggcattta 67527

                                                         
Query: 62    gctacataccctagtacattccctgctgttgctgatcatggaga 105
             ||||| ||||| ||||| || || |||||||| ||||| |||||
Sbjct: 67528 gctacttacccgagtacttttcccgctgttgcggatcacggaga 67571



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 500   gctcgttcttcagatgactggcaatacatggccattgattgtctactctggtt 552
             ||||||||||| ||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct: 67966 gctcgttcttctgatgattggcagtatatggcgattgaatgtcttctttggtt 68018



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>dbj|AK058230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B05, full
           insert sequence
          Length = 1430

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 574 tcataaggttatagataaaatcgccccgacactgatagatttagcagatatttccacact 633
           ||||||||| ||||||| | | ||| | |||||||||||||||||| |||| || |  ||
Sbjct: 25  tcataaggtaatagatagagttgcctcaacactgatagatttagcaaatatctcaatgct 84

                                      
Query: 634 cggtgattacaaaaggctaggtgacac 660
           ||||||||| ||||  || ||||||||
Sbjct: 85  cggtgattataaaaaacttggtgacac 111



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>ref|NM_123678.1| Arabidopsis thaliana unknown protein AT5G43120 mRNA, complete cds
          Length = 1767

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 248 aaagccgaggaatgggctagccaactgcagtgctggtc 285
           ||||||||||||||||| |||||||| || ||||||||
Sbjct: 685 aaagccgaggaatgggcaagccaactccaatgctggtc 722



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>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4
          Length = 79046

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 248   aaagccgaggaatgggctagccaactgcagtgctggtc 285
             ||||||||||||||||| |||||||| || ||||||||
Sbjct: 59225 aaagccgaggaatgggcaagccaactccaatgctggtc 59262



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>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence
          Length = 110038

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 5     agaggtaggctgacttgggtggagcaaagagttgctgtcagagctttggggcatttggct 64
             ||||||||||| || ||||||||||| ||||| || ||| | ||| | |||||||| |||
Sbjct: 68573 agaggtaggctcacctgggtggagcagagagtggcggtccgcgctctagggcatttagct 68632

                     
Query: 65    acataccc 72
             || |||||
Sbjct: 68633 acttaccc 68640



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>gb|AC124356.4| Mus musculus BAC clone RP24-484D12 from chromosome 12, complete
             sequence
          Length = 161982

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   caacttgcctcaagctctcta 145
             |||||||||||||||||||||
Sbjct: 49587 caacttgcctcaagctctcta 49607



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>emb|CR956381.6| Pig DNA sequence from clone CH242-248C21 on chromosome 17, complete
             sequence
          Length = 58781

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 444   ttggccgaggtcatgttgctaata 467
             ||||||||||||||| ||||||||
Sbjct: 22348 ttggccgaggtcatgctgctaata 22371



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>emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chromosome 6 Contains three
             pseudogenes similar to 43kD small nuclear RNA activating
             complex polypeptide 1 (SNAPC1) (SNAP43 PTFGAMMA PTFgamma),
             a novel protein similar to UL16 binding protein 2 (ULBP2),
             the 3' end of a novel gene, a novel gene, the ULBP2 gene
             for UL16 binding protein 2 (RAET1H ALCAN-alpha) and three
             CpG islands, complete sequence
          Length = 46941

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   tgggtggtgctgaaatggaa 241
             ||||||||||||||||||||
Sbjct: 11331 tgggtggtgctgaaatggaa 11350



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>emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C13 on chromosome 6q25.2-26
             Contains the 5' end of a novel gene, a hypothetical
             protein PNAS-131 pseudogene and a CpG island, complete
             sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   cacctgctggtgttggttta 418
             ||||||||||||||||||||
Sbjct: 35998 cacctgctggtgttggttta 35979



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>gb|AC116715.22| Mus musculus chromosome 5, clone RP23-129N14, complete sequence
          Length = 193245

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    aagcctgagtttctccatga 333
              ||||||||||||||||||||
Sbjct: 145502 aagcctgagtttctccatga 145521



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>ref|NM_057184.1| Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide
            6 (Chrna6), mRNA
          Length = 1760

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 511  agatgactggcaatacatggccat 534
            |||||||||| |||||||||||||
Sbjct: 1534 agatgactggaaatacatggccat 1557



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>ref|XM_579601.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_057184
            (LOC497707), mRNA
          Length = 1755

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 511  agatgactggcaatacatggccat 534
            |||||||||| |||||||||||||
Sbjct: 1534 agatgactggaaatacatggccat 1557



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>gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, complete sequence
          Length = 211658

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    aagcctgagtttctccatga 333
              ||||||||||||||||||||
Sbjct: 193467 aagcctgagtttctccatga 193448



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>gb|L08227.1|RATNARA6S Rat nicotinic acetylcholine receptor alpha 6 subunit mRNA sequence
          Length = 1760

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 511  agatgactggcaatacatggccat 534
            |||||||||| |||||||||||||
Sbjct: 1534 agatgactggaaatacatggccat 1557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,442,189
Number of Sequences: 3902068
Number of extensions: 5442189
Number of successful extensions: 96711
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96637
Number of HSP's gapped (non-prelim): 74
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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