| Clone Name | bags5e22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506728.1| PREDICTED Oryza sativa (japonica cultivar-group), P0669G09.11 mRNA Length = 2109 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 684 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 743 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 744 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 803 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 804 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 863 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 864 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 923 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 924 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 983 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 984 ggagaaagacttggatca 1001 Score = 52.0 bits (26), Expect = 0.002 Identities = 83/102 (81%) Strand = Plus / Plus Query: 24 ttcaatgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggct 83 ||||||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| Sbjct: 486 ttcaatgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcc 545 Query: 84 tattatttgcaagtgccttctcatagtgattggccttattgt 125 | | ||||||| ||||| | |||||||||| |||||||| Sbjct: 546 tgtcgtttgcaaaggcctttttatagtgattgcgcttattgt 587
>ref|XM_464259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2042 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 617 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 676 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 677 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 736 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 737 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 796 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 797 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 856 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 857 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 916 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 917 ggagaaagacttggatca 934 Score = 52.0 bits (26), Expect = 0.002 Identities = 83/102 (81%) Strand = Plus / Plus Query: 24 ttcaatgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggct 83 ||||||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| Sbjct: 419 ttcaatgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcc 478 Query: 84 tattatttgcaagtgccttctcatagtgattggccttattgt 125 | | ||||||| ||||| | |||||||||| |||||||| Sbjct: 479 tgtcgtttgcaaaggcctttttatagtgattgcgcttattgt 520
>emb|AJ831493.1| Oryza sativa mRNA for protein-O-fucosyltransferase 1 (fut12 gene) Length = 1326 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 195 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 254 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 255 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 314 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 315 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 374 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 375 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 434 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 435 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 494 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 495 ggagaaagacttggatca 512 Score = 44.1 bits (22), Expect = 0.53 Identities = 79/98 (80%) Strand = Plus / Plus Query: 28 atgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggcttatt 87 ||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| | | Sbjct: 1 atgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcctgtc 60 Query: 88 atttgcaagtgccttctcatagtgattggccttattgt 125 ||||||| ||||| | |||||||||| |||||||| Sbjct: 61 gtttgcaaaggcctttttatagtgattgcgcttattgt 98
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 3703909 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 3703968 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 3703969 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 3704028 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 3704029 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 3704088 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 3704089 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 3704148 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 3704149 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 3704208 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 3704209 ggagaaagacttggatca 3704226 Score = 52.0 bits (26), Expect = 0.002 Identities = 83/102 (81%) Strand = Plus / Plus Query: 24 ttcaatgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggct 83 ||||||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| Sbjct: 3703711 ttcaatgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcc 3703770 Query: 84 tattatttgcaagtgccttctcatagtgattggccttattgt 125 | | ||||||| ||||| | |||||||||| |||||||| Sbjct: 3703771 tgtcgtttgcaaaggcctttttatagtgattgcgcttattgt 3703812
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G09 Length = 140067 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 44226 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 44285 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 44286 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 44345 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 44346 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 44405 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 44406 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 44465 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 44466 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 44525 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 44526 ggagaaagacttggatca 44543 Score = 52.0 bits (26), Expect = 0.002 Identities = 83/102 (81%) Strand = Plus / Plus Query: 24 ttcaatgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggct 83 ||||||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| Sbjct: 44028 ttcaatgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcc 44087 Query: 84 tattatttgcaagtgccttctcatagtgattggccttattgt 125 | | ||||||| ||||| | |||||||||| |||||||| Sbjct: 44088 tgtcgtttgcaaaggcctttttatagtgattgcgcttattgt 44129
>dbj|AK073486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043N20, full insert sequence Length = 2038 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 613 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 672 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 673 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 732 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 733 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 792 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 793 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 852 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 853 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 912 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 913 ggagaaagacttggatca 930 Score = 52.0 bits (26), Expect = 0.002 Identities = 83/102 (81%) Strand = Plus / Plus Query: 24 ttcaatgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggct 83 ||||||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| Sbjct: 415 ttcaatgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcc 474 Query: 84 tattatttgcaagtgccttctcatagtgattggccttattgt 125 | | ||||||| ||||| | |||||||||| |||||||| Sbjct: 475 tgtcgtttgcaaaggcctttttatagtgattgcgcttattgt 516
>dbj|AK073338.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029D16, full insert sequence Length = 2108 Score = 345 bits (174), Expect = 1e-91 Identities = 282/318 (88%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 683 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 742 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 743 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 802 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 803 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 862 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 863 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 922 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 923 agtttctaatcaaaccaagcctttcaaactccaaaagggaagtggtaggaggtggaccgt 982 Query: 522 ggagagagacttggatca 539 ||||| |||||||||||| Sbjct: 983 ggagaaagacttggatca 1000 Score = 52.0 bits (26), Expect = 0.002 Identities = 83/102 (81%) Strand = Plus / Plus Query: 24 ttcaatgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggct 83 ||||||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| Sbjct: 485 ttcaatgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcc 544 Query: 84 tattatttgcaagtgccttctcatagtgattggccttattgt 125 | | ||||||| ||||| | |||||||||| |||||||| Sbjct: 545 tgtcgtttgcaaaggcctttttatagtgattgcgcttattgt 586
>emb|AJ831494.1| Saccharum officinarum mRNA for protein-O-fucosyltransferase 1 (fut12 gene) Length = 2624 Score = 313 bits (158), Expect = 4e-82 Identities = 290/334 (86%) Strand = Plus / Plus Query: 222 aggcaagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatt 281 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1150 aggcaagttcattgaggttccacagattatatggggattgaacaatcagaagattgcgtt 1209 Query: 282 tgccagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgag 341 |||||| || |||||||| || |||||||||||||| ||||| |||||||| ||| |||| Sbjct: 1210 tgccagggcgtgcttgactgcgagattcctgaaccggtctctgctcatgcctagtttgag 1269 Query: 342 tgcttcgcttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatt 401 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || Sbjct: 1270 tgcttcgcttttctacaaagaggttgacttgctgcgaccaatcactttcgacaaggtgtt 1329 Query: 402 tgaccttaataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcaga 461 |||| ||| |||||||| |||| ||| || ||||| |||||| ||||||| |||||||| Sbjct: 1330 tgactttaccaagttcaacgcccgttgccaggggttcgtaaggttagctcgctattcaga 1389 Query: 462 agtttcgaatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagt 521 |||||| |||| ||| ||||||||||||| |||||||| | |||||| |||||||| | Sbjct: 1390 agtttctaatcaaaccaagcctttcaaactccaaaagggaactggtagaaggtggaccgc 1449 Query: 522 ggagagagacttggatcaactgcagcaatccaga 555 || | ||||||||||||||| || |||| |||| Sbjct: 1450 agacaaagacttggatcaactacaacaatacaga 1483 Score = 184 bits (93), Expect = 2e-43 Identities = 135/149 (90%) Strand = Plus / Plus Query: 225 caagtttgttgaggtcccacagattatatggggattgaacaatcagaagattgcatttgc 284 ||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||| || Sbjct: 791 caagtttcttgaggtcccacagatcatatgggggttgaacaatcaaaagattgcattcgc 850 Query: 285 cagagcatgcttgacggcaagattcctgaaccgttctctactcatgccaagtctgagtgc 344 ||||||||||||||| ||||||||||||||| | || || ||||||||||| ||||||| Sbjct: 851 cagagcatgcttgactgcaagattcctgaacagatcccttctcatgccaagcttgagtgc 910 Query: 345 ttcgcttttctacaaagaggttgacttgc 373 ||| || |||||||||||||||||||||| Sbjct: 911 ttcactcttctacaaagaggttgacttgc 939 Score = 44.1 bits (22), Expect = 0.53 Identities = 79/98 (80%) Strand = Plus / Plus Query: 28 atgaacatcctactagaccttaagcatctcaagcacattagcttgccggcgaggcttatt 87 ||||||||| ||||||| || || ||||||||||| | ||||||||| || ||| | | Sbjct: 956 atgaacatcatactagaactcaaccatctcaagcaggtcagcttgccgacgcggcctgtc 1015 Query: 88 atttgcaagtgccttctcatagtgattggccttattgt 125 ||||||| ||||| | |||||||||| |||||||| Sbjct: 1016 gtttgcaaaggcctttttatagtgattgcgcttattgt 1053
>emb|AJ579857.1|TAE579857 Triticum aestivum partial mRNA for GDP-fucose protein-O-fucosyltransferase 1 (fut12 gene) Length = 1685 Score = 230 bits (116), Expect = 4e-57 Identities = 221/256 (86%) Strand = Plus / Plus Query: 349 cttttctacaaagaggttgacttgctgcagcctattgctttcgacaaggtatttgacctt 408 ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| | Sbjct: 15 cttttttacaaagaggttgacttgctgcagcctattcctttcgacaaggtgtttgacttc 74 Query: 409 aataagttcaatgcccattgtcatgggtttgtaagggtagctcggtattcagaagtttcg 468 | || |||||||| | ||||||||||||| |||| |||||||||| || || |||||| Sbjct: 75 accaaattcaatgcacgctgtcatgggtttgcaaggctagctcggtactccgaggtttcg 134 Query: 469 aatcgtaccgagcctttcaaacttcaaaagggcagtggtaggaggtggacagtggagaga 528 |||| ||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 135 aatcatactgagccctataaactacaaaagggaagtggtaggaggtggacagtggagaga 194 Query: 529 gacttggatcaactgcagcaatccagattgggggaggccgatggctttgaagtgattcat 588 ||||||||||| ||||| || |||| | ||| || |||||||||| | |||| |||||| Sbjct: 195 gacttggatcagctgcaacagtccaaaacgggtgaagccgatggctatcaagtaattcat 254 Query: 589 gtcactgggaagcatc 604 ||||||||||| |||| Sbjct: 255 gtcactgggaaacatc 270
>ref|NM_111405.2| Arabidopsis thaliana unknown protein AT3G05320 mRNA, complete cds Length = 1233 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 253 tggggattgaacaatcagaagattgcatttgccagagcatgcttgacggcaagattcctg 312 |||||| | |||||||||||||| || ||||| ||||| ||||||||||||||| | || Sbjct: 16 tggggactaaacaatcagaagatagcttttgctagagcttgcttgacggcaagaatgatg 75 Query: 313 aaccgttctctactcatgccaagtctgagtgcttcgcttttctacaaagaggttga 368 ||| | | || |||||||| ||||| |||||||| | |||||||| || ||||| Sbjct: 76 aacagaacgcttctcatgcctagtctaagtgcttccttgttctacaaggaagttga 131
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 253 tggggattgaacaatcagaagattgcatttgccagagcatgcttgacggcaagattcctg 312 |||||| | |||||||||||||| || ||||| ||||| ||||||||||||||| | || Sbjct: 110668 tggggactaaacaatcagaagatagcttttgctagagcttgcttgacggcaagaatgatg 110609 Query: 313 aaccgttctctactcatgccaagtctgagtgcttcgcttttctacaaagaggttga 368 ||| | | || |||||||| ||||| |||||||| | |||||||| || ||||| Sbjct: 110608 aacagaacgcttctcatgcctagtctaagtgcttccttgttctacaaggaagttga 110553
>gb|BT002034.1| Arabidopsis thaliana unknown protein (At3g05320) mRNA, complete cds Length = 1234 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 253 tggggattgaacaatcagaagattgcatttgccagagcatgcttgacggcaagattcctg 312 |||||| | |||||||||||||| || ||||| ||||| ||||||||||||||| | || Sbjct: 16 tggggactaaacaatcagaagatagcttttgctagagcttgcttgacggcaagaatgatg 75 Query: 313 aaccgttctctactcatgccaagtctgagtgcttcgcttttctacaaagaggttga 368 ||| | | || |||||||| ||||| |||||||| | |||||||| || ||||| Sbjct: 76 aacagaacgcttctcatgcctagtctaagtgcttccttgttctacaaggaagttga 131
>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence Length = 203962 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 attaaagaactgtttcaatgaacat 35 |||||||||||||| |||||||||| Sbjct: 142648 attaaagaactgttacaatgaacat 142672
>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence Length = 171669 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 ccctggagttaggaaaggcaagttt 231 |||||||||||||||| |||||||| Sbjct: 103145 ccctggagttaggaaatgcaagttt 103169
>gb|AC161210.5| Mus musculus chromosome 3, clone RP23-71N6, complete sequence Length = 158006 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 207 ccctggagttaggaaaggcaagttt 231 |||||||||||||||| |||||||| Sbjct: 129703 ccctggagttaggaaatgcaagttt 129679
>gb|AC140267.2| Mus musculus BAC clone RP24-303O5 from chromosome 15, complete sequence Length = 169842 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 gtgagaaggaattaaagaactgttt 25 |||||||||||||||||||| |||| Sbjct: 67060 gtgagaaggaattaaagaacagttt 67084
>gb|AC093690.5| Homo sapiens BAC clone RP11-731I19 from 2, complete sequence Length = 201467 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 gcctttcaaacttcaaaaggg 500 ||||||||||||||||||||| Sbjct: 29937 gcctttcaaacttcaaaaggg 29917
>gb|AC155313.2| Mus musculus BAC clone RP23-349D10 from chromosome 15, complete sequence Length = 213367 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 gtgagaaggaattaaagaactgttt 25 |||||||||||||||||||| |||| Sbjct: 206172 gtgagaaggaattaaagaacagttt 206196
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gccaagtctgagtgcttcgc 349 |||||||||||||||||||| Sbjct: 3715267 gccaagtctgagtgcttcgc 3715248
>gb|AC126607.7| Mus musculus chromosome 6, clone RP24-113M16, complete sequence Length = 171856 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 ttcaaacttcaaaagggcag 503 |||||||||||||||||||| Sbjct: 57010 ttcaaacttcaaaagggcag 56991
>gb|AC121893.3| Mus musculus BAC clone RP24-157C12 from chromosome 16, complete sequence Length = 137384 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 cagtggagagagacttggat 537 |||||||||||||||||||| Sbjct: 136532 cagtggagagagacttggat 136551
>gb|AC166548.2| Nectria haematococca clone JGIAYWI-9B5, complete sequence Length = 41007 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 catgcttgacggcaagattc 309 |||||||||||||||||||| Sbjct: 25725 catgcttgacggcaagattc 25744
>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5' end of the CASQ2 gene for calsequestrin 2 (cardiac muscle), the NHLH2 gene for nescient helix loop helix 2, a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene and two CpG islands, complete sequence Length = 164655 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tgccttctcatagtgattgg 116 |||||||||||||||||||| Sbjct: 85835 tgccttctcatagtgattgg 85816
>emb|AL159980.14| Human DNA sequence from clone RP11-56M2 on chromosome 13 Contains a histone pseudogene, complete sequence Length = 162044 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ttgaacaatcagaagattgcattt 282 ||||||||| |||||||||||||| Sbjct: 94097 ttgaacaataagaagattgcattt 94120
>gb|AC015954.9| Homo sapiens chromosome 18, clone RP11-24L5, complete sequence Length = 180507 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 aagggcagtggtaggaggtg 515 |||||||||||||||||||| Sbjct: 92479 aagggcagtggtaggaggtg 92460
>gb|AC104996.4| Homo sapiens chromosome 17, clone RP11-1148O4, complete sequence Length = 155848 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 494 aaaagggcagtggtaggaggtgga 517 ||||||||||| |||||||||||| Sbjct: 101812 aaaagggcagttgtaggaggtgga 101789
>gb|AC158167.5| Mus musculus BAC clone RP23-432K4 from chromosome 16, complete sequence Length = 43409 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 cagtggagagagacttggat 537 |||||||||||||||||||| Sbjct: 1148 cagtggagagagacttggat 1167 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,060,144 Number of Sequences: 3902068 Number of extensions: 5060144 Number of successful extensions: 114155 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114051 Number of HSP's gapped (non-prelim): 104 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)