ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4p14 |
|---|---|
| Clone Library Name | barley_pub |
>YO7T_YEAST (Q08647) Hypothetical pseudouridine synthase YOR243C (EC 5.4.99.-)| Length = 676 Score = 90.9 bits (224), Expect = 2e-18 Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 3/157 (1%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMRAGIYG--VIEGDLVYKKECLGEGTLTDTSKNNXXH 178 IPR LR MYVH+YQSY+WN AS R ++G ++ GDLV DTS+ + Sbjct: 442 IPRNLRTMYVHAYQSYVWNSIASKRIELHGLKLVVGDLV-----------IDTSEKSPLI 490 Query: 179 TIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGN-EVAGIY 355 + + D F E + E K ED+ YT+EDVVLP PG + L+P N E+ +Y Sbjct: 491 SGIDDED-FDEDVREAQFIRAKAVTQEDIDSVKYTMEDVVLPSPGFDVLYPSNEELKQLY 549 Query: 356 HEIANKDGISLTKSIHGVKEFSITSMKGGYRRVLQRP 466 +I D + V++FS+ G YR V+Q+P Sbjct: 550 VDILKADNMDPFNMRRKVRDFSLA---GSYRTVIQKP 583
>YH2X_SCHPO (O74343) Hypothetical pseudouridine synthase C1A4.09 in chromosome| II (EC 5.4.99.-) Length = 680 Score = 76.6 bits (187), Expect = 4e-14 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 2/156 (1%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMRAGIYG--VIEGDLVYKKECLGEGTLTDTSKNNXXH 178 IPR LR +Y H+YQSY+WN AS R G + GDLVY E G + Sbjct: 455 IPRHLRSIYPHAYQSYVWNRVASWRIKNLGDRPVVGDLVYSTESNG--------LSQKSP 506 Query: 179 TIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGIYH 358 + E +E LP + S + + +++ +++ D+VLPLPG ++P NE IY Sbjct: 507 IVDPEAPDLLEDLPVSSKLSARPIEEDEVNN--FSIYDIVLPLPGRNVIYPKNETFDIYK 564 Query: 359 EIANKDGISLTKSIHGVKEFSITSMKGGYRRVLQRP 466 + N+ + +E S+ G YR++L RP Sbjct: 565 SVMNEASLDPLNMSRKDREL---SLPGDYRKLLVRP 597
>PUS7_HUMAN (Q96PZ0) Pseudouridylate synthase 7 homolog (EC 5.4.99.-)| Length = 661 Score = 76.3 bits (186), Expect = 5e-14 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 2/156 (1%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMRAGIYGV--IEGDLVYKKECLGEGTLTDTSKNNXXH 178 IPR RLMY+HSYQSY+WN+ S R YG+ + GDLV K Sbjct: 467 IPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVPGDLVLK---------------GATA 511 Query: 179 TIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGIYH 358 T E D+ Y++ DVV+PLPG + ++P +++ Y Sbjct: 512 TYIEEDDV-----------------------NNYSIHDVVMPLPGFDVIYPKHKIQEAYR 548 Query: 359 EIANKDGISLTKSIHGVKEFSITSMKGGYRRVLQRP 466 E+ D + + H ++++S++ G YR+++ RP Sbjct: 549 EMLTADNLDIDNMRHKIRDYSLS---GAYRKIIIRP 581
>TRUD_PICTO (Q6L1R2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 414 Score = 50.8 bits (120), Expect = 2e-06 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMR----AGIYGVIEGDLVYKKECLGEGTLTDTSKNN 169 A+P+ L +M+VH++QSYL+N S R + VIEGDL+Y Sbjct: 251 ALPKNLSIMFVHAFQSYLFNKMLSERMKHVKDLKTVIEGDLLY----------------- 293 Query: 170 XXHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDV--VLPLPGSETLFPGNEV 343 +D + + I++ + + ++L + +++ + V+PLPG +T P Sbjct: 294 -------NIDDYFNPDKKRLIEANRY--NLEMLNNLSSMDKIRPVIPLPGFDTRMPDGLQ 344 Query: 344 AGIYHEIANKDGISLTK-SIHGVKEFSITSMKGGYRRVLQRPIDCK 478 I ++ + +SL I G E+S S G YR + +PI+ K Sbjct: 345 RDIMLKVLEDENVSLQDFKIPG--EYSYMSSSGDYRIISAKPINLK 388
>TRUD_THEVO (Q978K9) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 409 Score = 46.6 bits (109), Expect = 4e-05 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 3/160 (1%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRAGIYG---VIEGDLVYKKECLGEGTLTDTSKNNX 172 ++P+ L +M+VH+YQSYL+N R IYG V+ GD+ + + D SK Sbjct: 236 SLPKNLTIMFVHAYQSYLFNRILDERLKIYGLNAVLPGDIAFPVDAYFN---PDKSK--- 289 Query: 173 XHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGI 352 I V + E I K+ S+ + + LP+ G +T ++ + Sbjct: 290 --------PIEVNSYNREKIS--KLVSSDKI--------RISLPIFGYKTWIDNSDFGDV 331 Query: 353 YHEIANKDGISLTKSIHGVKEFSITSMKGGYRRVLQRPID 472 + I ++GIS + K+F+ S G R + +PI+ Sbjct: 332 EYGILKEEGIS--QDDFKNKDFAYLSSSGDRRIISAKPIN 369
>TRUD_METAC (Q8TKX2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 441 Score = 45.1 bits (105), Expect = 1e-04 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 6/157 (3%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMR----AGIYGVIEGDLVYKKECLGEGTLTDTSKNNX 172 +P+ L M+VH+YQSY++N R + +EGD+V + E L D+SK Sbjct: 264 LPKNLYRMFVHAYQSYIYNMILCRRIESGISLNRAVEGDIVCFR---NEAGLPDSSK--- 317 Query: 173 XHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGI 352 E + ET+ ++ L+K + + PLPG T F +G+ Sbjct: 318 -----------TEKVTSETVNAM-----NRLIK--HGRAFITAPLPGFNTEF----ASGV 355 Query: 353 YHEIANKDGISLTKSIHG--VKEFSITSMKGGYRRVL 457 EI +K L S+ G V+EF S KG R VL Sbjct: 356 PGEIESKILKELRVSLEGFNVEEFPEMSSKGTRREVL 392
>TRUD_METMA (Q8Q0M2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 438 Score = 42.7 bits (99), Expect = 6e-04 Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 4/155 (2%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMR--AGI--YGVIEGDLVYKKECLGEGTLTDTSKNNX 172 +P+ L M+VH YQSY++N R AGI +EGD+V + +G L D+SK Sbjct: 261 LPQNLYRMFVHGYQSYIYNIILCRRIEAGIPLNRAVEGDIVCFRNEVG---LPDSSK--- 314 Query: 173 XHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGI 352 E + ET+ ++ LLK + PLPG T F I Sbjct: 315 -----------TEKVTSETVNAM-----NRLLKLGRAF--ITAPLPGYNTEFASGIPGEI 356 Query: 353 YHEIANKDGISLTKSIHGVKEFSITSMKGGYRRVL 457 + + + G+SL +++F S KG R VL Sbjct: 357 ENGVLKELGVSLEG--FNIEKFPEMSSKGTRREVL 389
>TRUD_METTH (O27572) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 415 Score = 42.7 bits (99), Expect = 6e-04 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRA--GIYGVIEGDLV 115 A+P+ L+ M+VH+YQSYL+N A S RA GI I GD+V Sbjct: 257 ALPKPLKRMFVHAYQSYLFNRAVSERAALGINTHIPGDIV 296
>TRUD_THEAC (Q9HLL3) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 411 Score = 42.0 bits (97), Expect = 0.001 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRAGIYGV---IEGDLVYKKECLGEGTLTDTSKNNX 172 A+P+ L +M+VH+YQSYL+N S+R YG+ I GD + D N Sbjct: 240 ALPKNLSIMFVHAYQSYLFNRMLSLRIEKYGLNRAIPGDTAFP---------VDRYFNPD 290 Query: 173 XHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGI 352 ++ V+T+ + I+ ++ V LP+ GSE ++ I Sbjct: 291 KSRPVEVNEVNVDTI-NQLIERDRLR--------------VALPIIGSEVGPDQSDFGEI 335 Query: 353 YHEIANKDGISLTKSIHGVKEFSITSMKGGYRRVLQRPIDCK*SRS 490 +I ++ + +S+ E+ S G R V +P+D S S Sbjct: 336 EKKILEEEHVD--RSMFRNSEYPHLSSTGDRRIVSAKPVDFSVSNS 379
>YQ4B_CAEEL (Q17426) Hypothetical pseudouridine synthase in chromosome V (EC| 5.4.99.-) Length = 577 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRAGIYG--VIEGDLVYKKECLGE 139 AIP R +YVH+YQS +WN AS R YG V E D+ LGE Sbjct: 365 AIPIQSRSLYVHAYQSLIWNKVASRRVKEYGTRVHESDVGANGFSLGE 412
>RPOC_WEIPA (P96178) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1054 Score = 37.7 bits (86), Expect = 0.021 Identities = 32/111 (28%), Positives = 47/111 (42%) Frame = +2 Query: 44 QSYLWNHAASMRAGIYGVIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPE 223 ++Y A MR G EGD +++ E L EG+ T+A+E I E Sbjct: 935 RTYTLPMTARMRVG-----EGDRIHRGETLNEGSADPKEIIQVRDTLATENYIVHEVQKV 989 Query: 224 ETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGIYHEIANKD 376 +Q V+I+D + A L V + PG L PG + AN+D Sbjct: 990 YRMQGVEISDKHIEVMARQMLRKVRVMDPGETDLLPGTLMDIAQFRDANED 1040
>RPOC_WEIHE (P96177) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1046 Score = 37.0 bits (84), Expect = 0.035 Identities = 28/97 (28%), Positives = 44/97 (45%) Frame = +2 Query: 44 QSYLWNHAASMRAGIYGVIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPE 223 ++Y ++ MR G EGD +++ E L EG+ T+A+E I +E Sbjct: 935 RTYTLPMSSRMRVG-----EGDHIHRGETLNEGSADPKEIIQVRDTLATENYIVLEVQKV 989 Query: 224 ETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPG 334 +Q V+I+D + A L V + PG L PG Sbjct: 990 YRMQGVEISDKHIEVMARQMLRKVRVMDPGETDLLPG 1026
>TRUD_ARCFU (O28596) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 411 Score = 37.0 bits (84), Expect = 0.035 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRAGIYGVI----EGDLVYKKECLGEGTLTDTSK 163 ++P+ L++M+VH+YQSY++N S R +G + EGD T +D S+ Sbjct: 248 SLPKNLKMMFVHAYQSYIFNRLLSERIRQFGSLKTLEEGDFACYLTFKTRPTFSDCSE 305
>TRUD_METBF (Q466V2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 438 Score = 35.8 bits (81), Expect = 0.079 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 6/157 (3%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMR----AGIYGVIEGDLVYKKECLGEGTLTDTSKNNX 172 +P+ L M+VH YQSY++N R + +EGD+V K E L D+SK Sbjct: 261 LPKNLYRMFVHGYQSYIYNIILCRRIEKGLSLNEAVEGDVVCFK---NEHGLPDSSKTEK 317 Query: 173 XHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGI 352 T ET+ ++ L+K + PLPG T F +GI Sbjct: 318 ATT--------------ETVNAM-----NRLIKKKRAF--ITAPLPGHNTEF----ASGI 352 Query: 353 YHEI--ANKDGISLTKSIHGVKEFSITSMKGGYRRVL 457 E+ A D + + ++E S KG R +L Sbjct: 353 PGEVEQAVLDELKVPLQGFNIEETPEMSSKGTRRELL 389
>TRUD_AQUAE (O67616) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 385 Score = 34.7 bits (78), Expect = 0.18 Identities = 12/19 (63%), Positives = 17/19 (89%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWN 61 +P+ +RLM+V +YQSYLWN Sbjct: 233 LPKNIRLMFVFAYQSYLWN 251
>TRUD_METKA (Q8TXJ7) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 400 Score = 34.3 bits (77), Expect = 0.23 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMRAG----IYGVIEGDL 112 +P +R M+VH+YQSYL+N S R ++ +EGD+ Sbjct: 259 LPMWIRRMFVHAYQSYLFNRILSERIARGLPVHRPVEGDV 298
>I5P2_HUMAN (P32019) Type II inositol-1,4,5-trisphosphate 5-phosphatase precursor| (EC 3.1.3.36) (Phosphoinositide 5-phosphatase) (5PTase) (75 kDa inositol polyphosphate-5-phosphatase) Length = 993 Score = 33.5 bits (75), Expect = 0.39 Identities = 20/76 (26%), Positives = 40/76 (52%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMRAGIYGVIEGDLVYKKECLGEGTLTDTSKNNXXHTI 184 IP+ L +M + Y++ + + G+ E + ++CL G + + S +N H++ Sbjct: 829 IPKELWMMVDYLYRNAVQQEDLFQQPGLRSEFE----HIRDCLDTGMIDNLSASN--HSV 882 Query: 185 ASEMDIFVETLPEETI 232 A + +F+E+LPE I Sbjct: 883 AEALLLFLESLPEPVI 898
>TRUD2_METJA (Q58759) Probable tRNA pseudouridine synthase D 2 (EC 5.4.99.-)| (tRNA-uridine isomerase D 2) (tRNA pseudouridylate synthase D 2) Length = 422 Score = 33.1 bits (74), Expect = 0.51 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 17/115 (14%) Frame = +2 Query: 17 LRLMYVHSYQSYLWNHAASMRAGIYGVIEGDLVYKKECLGEGTLT----------DTSKN 166 L+ ++V +YQSYLWN Y E + Y+ EC GTL + K+ Sbjct: 262 LKKIFVAAYQSYLWNECVKELLRKYVPEEDRVYYEYEC---GTLMFYKKMDEEVFNILKD 318 Query: 167 NXXHTIA-------SEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLP 310 TIA E +I E L E + ++ + +L K +Y+ E +L +P Sbjct: 319 KKFPTIAPDIEYSGEEKEIIEEILKREGLTMEELNNIGELGKFIYS-ERKILSIP 372
>ECEL1_HUMAN (O95672) Endothelin-converting enzyme-like 1 (EC 3.4.24.-) (Xce| protein) Length = 775 Score = 32.7 bits (73), Expect = 0.67 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Frame = +2 Query: 113 VYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLED 292 VY L T++ +N+ + I + D TLPE T+ + DSE +L A + Sbjct: 238 VYSAAALFSLTVSLDDRNSSRYVIRIDQDGL--TLPERTLYLAQDEDSEKILAAYRVFME 295 Query: 293 VVLPLPGSETL-FPGNEVAGIYHEIANKDGISLTKSIHGVKEFSITSM 433 VL L G++ + E+ + ++AN +T S H ++SM Sbjct: 296 RVLSLLGADAVEQKAQEILQVEQQLAN-----ITVSEHDDLRRDVSSM 338
>TRUD_NANEQ (P60348) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 374 Score = 32.7 bits (73), Expect = 0.67 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASM 76 AIP+ + ++++HSYQSY++N M Sbjct: 238 AIPKWILMLFIHSYQSYIFNETLKM 262
>COX2_BACP3 (Q03438) Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide II) (Cytochrome aa3 subunit 2) (Oxidase aa(3) subunit 2) Length = 356 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/104 (24%), Positives = 44/104 (42%) Frame = +2 Query: 101 EGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVY 280 EG+ ++ K C+G +T K A + F + E I + + E+L K Sbjct: 264 EGEAIFNKSCIGCHAVTPLDKRPAQRRTAPNLADFGD---RERIAGILEHNEENLKKW-- 318 Query: 281 TLEDVVLPLPGSETLFPGNEVAGIYHEIANKDGISLTKSIHGVK 412 L ++ PGN++AG Y + + +LTK + +K Sbjct: 319 --------LRDPNSVKPGNKMAGTYGHLTEEQIDALTKYLMSLK 354
>TRPB_PSEPU (P11080) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 405 Score = 30.8 bits (68), Expect = 2.5 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Frame = +2 Query: 62 HAASMRAGIYGVIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPE------ 223 HAAS+ G+ GV+ G+ Y + +G +TD H+I++ +D + PE Sbjct: 275 HAASLNGGVPGVLHGNRTYLLQD-EDGQITD------AHSISAGLD-YPGIGPEHAYLHE 326 Query: 224 -ETIQSVKIADSE--DLLKAVYTLEDVVLPLPGSETL 325 + ++ V I D E D A LE ++ L S L Sbjct: 327 VKRVEYVSITDDEALDAFHATCRLEGIIPALESSHAL 363
>TRPB_PSEPK (Q88RP6) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 405 Score = 30.8 bits (68), Expect = 2.5 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Frame = +2 Query: 62 HAASMRAGIYGVIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPE------ 223 HAAS+ G+ GV+ G+ Y + +G +TD H+I++ +D + PE Sbjct: 275 HAASLNGGVPGVLHGNRTYLLQD-QDGQITD------AHSISAGLD-YPGIGPEHAYLHE 326 Query: 224 -ETIQSVKIADSE--DLLKAVYTLEDVVLPLPGSETL 325 + ++ V I D E D A LE ++ L S L Sbjct: 327 VKRVEYVSITDDEALDAFHATCRLEGIIPALESSHAL 363
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 30.8 bits (68), Expect = 2.5 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = +2 Query: 95 VIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPEETIQSVKIADSEDLLKA 274 V EGD V++ + L G++ T+ +E I E +Q V IAD + Sbjct: 1017 VSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLT 1076 Query: 275 VYTLEDVVLPLPGSETLFPG 334 L+ V + PG + PG Sbjct: 1077 RQMLQKVRVLDPGETDILPG 1096
>PB1_CHICK (Q90941) Protein polybromo-1| Length = 1633 Score = 30.4 bits (67), Expect = 3.3 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Frame = +2 Query: 137 EGTLTDTSKNNXXHT-IASEMDIFVETLPEETIQSVKIADSEDLLKAVYTLEDVVLPLPG 313 EG +T+T T + SE+DI T P+ T +SVK + ++ K + +L Sbjct: 1332 EGDITETPSMPQLQTPLTSELDIMPYTPPQSTPKSVKGSTKKEGSKRKINMSGYILFSSE 1391 Query: 314 SETLFPGNEVAGIYHEIANKDGISLTKSIHGVKEFSITSMKGGYRRV---LQRPIDCK*S 484 + + E++ G +++ K+ M GY V LQ P+D S Sbjct: 1392 MRPVIKAQHPDYSFGELSRLVGTE-WRNLEATKKAEYEGMISGYPPVLPPLQGPVDGIVS 1450 Query: 485 RSSLLHIFPFNP 520 S+ + P P Sbjct: 1451 MGSMQPLHPGVP 1462
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = -3 Query: 342 TSFPGNNVSEPGKGRTTSSSVYTAFNKSSESAILTDWIVSSGSVSTNMSISDAIVW 175 +SFP N+ P GR SSS Y A +S SA + + GS+ +S + +W Sbjct: 107 SSFPSNS-HLPQLGRVDSSSSYYASTESPHSADMQMTLFGKGSLKVLLSHGNLDIW 161
>TRUD1_METJA (Q58008) Probable tRNA pseudouridine synthase D 1 (EC 5.4.99.-)| (tRNA-uridine isomerase D 1) (tRNA pseudouridylate synthase D 1) Length = 392 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%) Frame = +2 Query: 5 IPRTLRLMYVHSYQSYLWNHAASMRAGIYGV--IEGDLV 115 +P LR M++++YQSYL+N + R YG +EGD++ Sbjct: 261 LPPYLRCMFINAYQSYLFNEIINRRFE-YGFEPMEGDIL 298
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 30.4 bits (67), Expect = 3.3 Identities = 25/91 (27%), Positives = 36/91 (39%) Frame = +2 Query: 104 GDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYT 283 GD V++ E L EG++ T++ E + E Q V+I D + Sbjct: 1018 GDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQM 1077 Query: 284 LEDVVLPLPGSETLFPGNEVAGIYHEIANKD 376 L V + PG L PG + ANKD Sbjct: 1078 LRKVRVMDPGDTDLLPGTLMDISDFTDANKD 1108
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 30.4 bits (67), Expect = 3.3 Identities = 25/91 (27%), Positives = 36/91 (39%) Frame = +2 Query: 104 GDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPEETIQSVKIADSEDLLKAVYT 283 GD V++ E L EG++ T++ E + E Q V+I D + Sbjct: 1018 GDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQM 1077 Query: 284 LEDVVLPLPGSETLFPGNEVAGIYHEIANKD 376 L V + PG L PG + ANKD Sbjct: 1078 LRKVRVMDPGDTDLLPGTLMDISDFTDANKD 1108
>TRUD2_METMP (Q6LZL0) Probable tRNA pseudouridine synthase D 2 (EC 5.4.99.-)| (tRNA-uridine isomerase D 2) (tRNA pseudouridylate synthase D 2) Length = 390 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRAGI-YGVIEGDLV 115 A+P L M+V++YQ+YL+N + R + +EGD++ Sbjct: 258 ALPPQLNSMFVNAYQAYLFNEMINKRFDYGFDELEGDIL 296
>TRUD_PYRAE (Q8ZTR2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 413 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMRAGIYGV---IEGDLV 115 AIP + +Y+ + QSY++N S+R I + +EGDLV Sbjct: 260 AIPPQILRVYIEAAQSYIFNRFLSIRMEIGPIDRPVEGDLV 300
>TRPB_PSESH (Q849P2) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 409 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +2 Query: 62 HAASMRAGIYGVIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMD 199 HAAS+ G+ GV+ G+ Y + G+G +TD H+I++ +D Sbjct: 275 HAASLNGGVPGVLHGNRTYLLQD-GDGQITDP------HSISAGLD 313
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = +2 Query: 95 VIEGDLVYKKECLGEGTLTDTSKNNXXHTIASEMDIFVETLPEETIQSVKIADSEDLLKA 274 V EGD V + + L G++ + +E I E +Q V+IAD + A Sbjct: 1015 VAEGDHVVRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMA 1074 Query: 275 VYTLEDVVLPLPGSETLFPG 334 L+ V + PG + PG Sbjct: 1075 RQMLQKVRILDPGETDILPG 1094
>VF11_VACCC (P21052) Protein F11| Length = 354 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Frame = +2 Query: 200 IFVETLPEETIQSVKIADS------EDLLKAVYTLEDVVLP 304 IFV T+P ET+ I D +DLL Y ++ V++P Sbjct: 61 IFVSTMPVETLFGSYITDDSDDYELKDLLNVTYNIKPVIVP 101
>TRUD_PYRHO (O59207) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 409 Score = 28.9 bits (63), Expect = 9.6 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 2 AIPRTLRLMYVHSYQSYLWNHAASMR 79 A+PR + +++H++QSYL+N S R Sbjct: 244 ALPRPILRIFIHAFQSYLFNLYISRR 269
>D152_HAEIN (P44935) Protective surface antigen D15 precursor (80 kDa D15| antigen) (D-15-Ag) (Outer membrane protein D15) Length = 795 Score = 28.9 bits (63), Expect = 9.6 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Frame = +2 Query: 41 YQSYLWNHAASMRAGIYGVIEGDLVYKKECLGEGTL----TDTSKNNXXHTIASEMDI-- 202 YQ+Y S+R YG I + +Y + G GT +D N T ++E+ + Sbjct: 641 YQTYTAGGIGSLRGFAYGSIGPNAIYAEHGNGNGTFKKISSDVIGGNAITTASAELIVPT 700 Query: 203 -FVETLPEETIQSVKIADS 256 FV + T+++ D+ Sbjct: 701 PFVSDKSQNTVRTSLFVDA 719 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,213,062 Number of Sequences: 219361 Number of extensions: 1530186 Number of successful extensions: 4035 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4029 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
