ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4p14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066384.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
2ref|NM_191438.1| Oryza sativa (japonica cultivar-group), predic... 127 4e-26
3gb|AY104823.1| Zea mays PCO129663 mRNA sequence 107 4e-20
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
9dbj|AP006109.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.12
10ref|NM_111354.2| Arabidopsis thaliana pseudouridylate synthase A... 42 1.8
11gb|AY735600.1| Arabidopsis thaliana hypothetical protein AT3G048... 42 1.8
12gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, com... 42 1.8
13gb|AC162894.4| Mus musculus chromosome 3, clone RP23-326A24, com... 42 1.8
14emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chro... 42 1.8
15gb|AY954844.1| Arabidopsis thaliana hypothetical protein (At3g04... 42 1.8
16gb|AY663851.1| Oryza sativa (japonica cultivar-group) SYD chroma... 40 7.3
17gb|AC166932.6| Mus musculus chromosome 7, clone RP23-349I13, com... 40 7.3
18gb|AC113065.16| Mus musculus chromosome 7, clone RP23-263E7, com... 40 7.3
19gb|AC125142.4| Mus musculus BAC clone RP24-342G10 from chromosom... 40 7.3
20gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome... 40 7.3
21emb|AL356419.10| Human DNA sequence from clone RP11-99L6 on chro... 40 7.3
22gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 ... 40 7.3
23emb|BX901953.5| Zebrafish DNA sequence from clone CH211-18G18 in... 40 7.3
24emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on ch... 40 7.3
25gb|AC025419.42| Homo sapiens 12 BAC RP11-230G5 (Roswell Park Can... 40 7.3
26gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 7.3
27dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
28gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Ca... 40 7.3
29emb|BX276105.6| Zebrafish DNA sequence from clone CH211-194G2 in... 40 7.3
30dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
31emb|AL844217.7| Zebrafish DNA sequence from clone DKEY-218L17, c... 40 7.3
32dbj|AK066536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
33gb|AC005659.3|AC005659 citb_161_g_12, complete sequence 40 7.3
34emb|BX510908.8| Mouse DNA sequence from clone RP23-264F3 on chro... 40 7.3
35gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, compl... 40 7.3
36gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 7.3
37gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 7.3
38gb|AC132457.4| Mus musculus BAC clone RP23-140B24 from 7, comple... 40 7.3
39gb|AC138328.3| Mus musculus BAC clone RP23-378F20 from 1, comple... 40 7.3
40gb|AC100561.13| Mus musculus chromosome 1, clone RP23-154C4, com... 40 7.3
41emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-2... 40 7.3 
>dbj|AK066384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065A19, full
            insert sequence
          Length = 2746

 Score =  159 bits (80), Expect = 1e-35
 Identities = 152/176 (86%)
 Strand = Plus / Plus

                                                                        
Query: 212  acacttccggaagaaacgatccagtctgtcaagatagctgattctgaagatttattgaag 271
            |||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1633 acacttccagaagaaacaatccagtctgtgaagatagttgattctgaagatttattgaag 1692

                                                                        
Query: 272  gcagtgtacacactcgaggatgttgtccttcctttgcctggctcagaaacattgtttcct 331
            |  || |||||| | || ||||||||||||||||||||||| ||  || |||| ||||||
Sbjct: 1693 ggtgtctacacatttgaagatgttgtccttcctttgcctggttcgcaagcattatttcct 1752

                                                                    
Query: 332  ggaaatgaagttgctgggatttatcatgaaatagctaataaggatggtattagctt 387
            ||||| | | ||||||  |||||||||||| | ||||| |||||||| ||||||||
Sbjct: 1753 ggaaacggaattgctgacatttatcatgaattggctaaaaaggatggcattagctt 1808



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 24   tgatgtatgtacatagttaccagagttatctatggaaccatgctgc 69
            ||||||| || ||||||||||| ||||| || ||||||||||||||
Sbjct: 1433 tgatgtacgttcatagttaccaaagttacctctggaaccatgctgc 1478



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 422  attacaagcatgaaaggaggtta 444
            |||||||||||||||||||||||
Sbjct: 2049 attacaagcatgaaaggaggtta 2071
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>ref|NM_191438.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score =  127 bits (64), Expect = 4e-26
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctatacctagaacactgagactgatgtatgtacatagttaccagagttatctatggaa 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||
Sbjct: 894 ggctatacctagaacactgagactgatgtatgtgcatagttaccagagttacttatggaa 953

                               
Query: 61  ccatgctgcgagtatgagag 80
           ||||||||| ||||||||||
Sbjct: 954 ccatgctgcaagtatgagag 973



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                        
Query: 399  tccatggagtcaaggaattctccattacaagcatgaaaggaggttaccgtcgtgtattac 458
            ||||||| ||| |||| ||||| |||||||| |||||||||||||| ||||| ||  | |
Sbjct: 1172 tccatggtgtcgaggacttctctattacaaggatgaaaggaggttatcgtcgggtgatcc 1231

                         
Query: 459  aacgacctattga 471
            | |||||||||||
Sbjct: 1232 agcgacctattga 1244



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 208  tgaaacacttccggaagaaacgatccagtctgtcaag 244
            |||||| ||||| ||||||| ||||||||||||||||
Sbjct: 1110 tgaaacgcttccagaagaaatgatccagtctgtcaag 1146



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 99   tagaaggtgacttggtttacaaaaa 123
            |||||||||||||||||||||||||
Sbjct: 1001 tagaaggtgacttggtttacaaaaa 1025
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>gb|AY104823.1| Zea mays PCO129663 mRNA sequence
          Length = 1516

 Score =  107 bits (54), Expect = 4e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                       
Query: 290 gatgttgtccttcctttgcctggctcagaaacattgtttcctggaaatgaagttgctggg 349
           ||||||||||| ||||||||||| ||| || ||||||||||||| |||||| |||| | |
Sbjct: 675 gatgttgtcctacctttgcctggttcacaagcattgtttcctgggaatgaaattgccgag 734

                                                                       
Query: 350 atttatcatgaaatagctaataaggatggtattagcttaacaaagagcatccatggagtc 409
           ||||| |||||||| ||||  |||||||| |||||||| ||  |||     ||||| |||
Sbjct: 735 atttaccatgaaatggctagaaaggatggcattagcttgacggagaatgctcatggtgtc 794

                                                 
Query: 410 aaggaattctccattacaagcatgaaaggaggttaccg 447
           ||||| || || ||||||||||||||||| ||||||||
Sbjct: 795 aaggagttttcgattacaagcatgaaaggtggttaccg 832



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 4   tatacctagaacactgagactgatgtatgtacatagttaccagagttatctatggaacca 63
           |||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||
Sbjct: 377 tataccaagaacactgagaatgatgtacgtacatagttaccaaagttatctgtggaatca 436

                            
Query: 64  tgctgcgagtatgagag 80
           |||||| ||||||||||
Sbjct: 437 tgctgccagtatgagag 453
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                       
Query: 314      tcagaaacattgtttcctggaaatgaagttgctgggatttatcatgaaatagcta 368
                |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 32655477 tcagaaacattgtttcctgggaacgaagttgctggaatttatcatgaaatagcta 32655423



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 28       gtatgtacatagttaccagagttatctatggaaccatgctgcgagtatgagag 80
                |||||| |||||||||||||||||  |||||||||||||||| ||||||||||
Sbjct: 32656751 gtatgtgcatagttaccagagttacttatggaaccatgctgcaagtatgagag 32656699



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 1        ggctatacctagaacactgagactgatgtatgt 33
                |||||||||||||||||||||||||||||||||
Sbjct: 32656909 ggctatacctagaacactgagactgatgtatgt 32656877



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 243      agatagctgattctgaagatttattgaaggcagtgtacacactcgaggatgttgtccttc 302
                ||||||| ||||||||||||||||  ||| |  |||||||| | |||||||| ||||| |
Sbjct: 32655619 agatagcggattctgaagatttatcaaagtccctgtacacatttgaggatgtagtcctcc 32655560

                          
Query: 303      ctttgcctgg 312
                ||||||||||
Sbjct: 32655559 ctttgcctgg 32655550



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 99       tagaaggtgacttggtttacaaaaa 123
                |||||||||||||||||||||||||
Sbjct: 32655874 tagaaggtgacttggtttacaaaaa 32655850



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 208      tgaaacacttccggaagaaacgatccagtctgtcaag 244
                |||||| ||||| ||||||| ||||||||||||||||
Sbjct: 32655765 tgaaacgcttccagaagaaatgatccagtctgtcaag 32655729



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 416      ttctccattacaagcatgaaaggaggttaccgtcgtgtattacaacgacctattga 471
                ||||| |||||||| |||||||||||||| ||||| ||  | || |||||||||||
Sbjct: 32654897 ttctctattacaaggatgaaaggaggttatcgtcgggtgatccagcgacctattga 32654842
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>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0695H10
          Length = 136883

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                     
Query: 314    tcagaaacattgtttcctggaaatgaagttgctgggatttatcatgaaatagcta 368
              |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 118272 tcagaaacattgtttcctgggaacgaagttgctggaatttatcatgaaatagcta 118218



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                   
Query: 28     gtatgtacatagttaccagagttatctatggaaccatgctgcgagtatgagag 80
              |||||| |||||||||||||||||  |||||||||||||||| ||||||||||
Sbjct: 119546 gtatgtgcatagttaccagagttacttatggaaccatgctgcaagtatgagag 119494



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                               
Query: 1      ggctatacctagaacactgagactgatgtatgt 33
              |||||||||||||||||||||||||||||||||
Sbjct: 119704 ggctatacctagaacactgagactgatgtatgt 119672



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                          
Query: 243    agatagctgattctgaagatttattgaaggcagtgtacacactcgaggatgttgtccttc 302
              ||||||| ||||||||||||||||  ||| |  |||||||| | |||||||| ||||| |
Sbjct: 118414 agatagcggattctgaagatttatcaaagtccctgtacacatttgaggatgtagtcctcc 118355

                        
Query: 303    ctttgcctgg 312
              ||||||||||
Sbjct: 118354 ctttgcctgg 118345



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 99     tagaaggtgacttggtttacaaaaa 123
              |||||||||||||||||||||||||
Sbjct: 118669 tagaaggtgacttggtttacaaaaa 118645



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 208    tgaaacacttccggaagaaacgatccagtctgtcaag 244
              |||||| ||||| ||||||| ||||||||||||||||
Sbjct: 118560 tgaaacgcttccagaagaaatgatccagtctgtcaag 118524



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 416    ttctccattacaagcatgaaaggaggttaccgtcgtgtattacaacgacctattga 471
              ||||| |||||||| |||||||||||||| ||||| ||  | || |||||||||||
Sbjct: 117692 ttctctattacaaggatgaaaggaggttatcgtcgggtgatccagcgacctattga 117637
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>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0490D09
          Length = 154430

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                    
Query: 314   tcagaaacattgtttcctggaaatgaagttgctgggatttatcatgaaatagcta 368
             |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 18272 tcagaaacattgtttcctgggaacgaagttgctggaatttatcatgaaatagcta 18218



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 28    gtatgtacatagttaccagagttatctatggaaccatgctgcgagtatgagag 80
             |||||| |||||||||||||||||  |||||||||||||||| ||||||||||
Sbjct: 19546 gtatgtgcatagttaccagagttacttatggaaccatgctgcaagtatgagag 19494



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                              
Query: 1     ggctatacctagaacactgagactgatgtatgt 33
             |||||||||||||||||||||||||||||||||
Sbjct: 19704 ggctatacctagaacactgagactgatgtatgt 19672



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 243   agatagctgattctgaagatttattgaaggcagtgtacacactcgaggatgttgtccttc 302
             ||||||| ||||||||||||||||  ||| |  |||||||| | |||||||| ||||| |
Sbjct: 18414 agatagcggattctgaagatttatcaaagtccctgtacacatttgaggatgtagtcctcc 18355

                       
Query: 303   ctttgcctgg 312
             ||||||||||
Sbjct: 18354 ctttgcctgg 18345



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 99    tagaaggtgacttggtttacaaaaa 123
             |||||||||||||||||||||||||
Sbjct: 18669 tagaaggtgacttggtttacaaaaa 18645



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 208   tgaaacacttccggaagaaacgatccagtctgtcaag 244
             |||||| ||||| ||||||| ||||||||||||||||
Sbjct: 18560 tgaaacgcttccagaagaaatgatccagtctgtcaag 18524



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 416   ttctccattacaagcatgaaaggaggttaccgtcgtgtattacaacgacctattga 471
             ||||| |||||||| |||||||||||||| ||||| ||  | || |||||||||||
Sbjct: 17692 ttctctattacaaggatgaaaggaggttatcgtcgggtgatccagcgacctattga 17637
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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 243   agatagctgattctgaagatttattgaaggcagtgtacacactcgaggatgttgtccttc 302
             |||||| |||||||||||||||||||||||  || |||||| | || |||||||||||||
Sbjct: 91030 agatagttgattctgaagatttattgaagggtgtctacacatttgaagatgttgtccttc 91089

                       
Query: 303   ctttgcctgg 312
             ||||||||||
Sbjct: 91090 ctttgcctgg 91099



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 422   attacaagcatgaaaggaggtta 444
             |||||||||||||||||||||||
Sbjct: 91836 attacaagcatgaaaggaggtta 91858



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 35    catagttaccagagttatctatggaaccatgctgc 69
             ||||||||||| ||||| || ||||||||||||||
Sbjct: 90550 catagttaccaaagttacctctggaaccatgctgc 90584



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 212   acacttccggaagaaacgatccagtctgt 240
             |||||||| |||||||| |||||||||||
Sbjct: 90917 acacttccagaagaaacaatccagtctgt 90945
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 243      agatagctgattctgaagatttattgaaggcagtgtacacactcgaggatgttgtccttc 302
                |||||| |||||||||||||||||||||||  || |||||| | || |||||||||||||
Sbjct: 25022177 agatagttgattctgaagatttattgaagggtgtctacacatttgaagatgttgtccttc 25022236

                          
Query: 303      ctttgcctgg 312
                ||||||||||
Sbjct: 25022237 ctttgcctgg 25022246



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 422      attacaagcatgaaaggaggtta 444
                |||||||||||||||||||||||
Sbjct: 25022983 attacaagcatgaaaggaggtta 25023005



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 35       catagttaccagagttatctatggaaccatgctgc 69
                ||||||||||| ||||| || ||||||||||||||
Sbjct: 25021697 catagttaccaaagttacctctggaaccatgctgc 25021731



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 212      acacttccggaagaaacgatccagtctgt 240
                |||||||| |||||||| |||||||||||
Sbjct: 25022064 acacttccagaagaaacaatccagtctgt 25022092
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>dbj|AP006109.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT39G11, TM0195a,
             complete sequence
          Length = 73192

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 28    gtatgtacatagttaccagagttatctatggaaccatgc 66
             |||||||||||||||||| || ||| | |||||||||||
Sbjct: 54276 gtatgtacatagttaccaaagctatttgtggaaccatgc 54238
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>ref|NM_111354.2| Arabidopsis thaliana pseudouridylate synthase AT3G04820 mRNA,
            complete cds
          Length = 2244

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 18   tgagactgatgtatgtacatagtta 42
            ||||| |||||||||||||||||||
Sbjct: 1370 tgagaatgatgtatgtacatagtta 1394
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>gb|AY735600.1| Arabidopsis thaliana hypothetical protein AT3G04820 mRNA, complete
            cds
          Length = 2400

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 18   tgagactgatgtatgtacatagtta 42
            ||||| |||||||||||||||||||
Sbjct: 1323 tgagaatgatgtatgtacatagtta 1347
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>gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, complete sequence
          Length = 159429

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   tctgaaatggacatatttgtt 208
             |||||||||||||||||||||
Sbjct: 21224 tctgaaatggacatatttgtt 21204
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>gb|AC162894.4| Mus musculus chromosome 3, clone RP23-326A24, complete sequence
          Length = 187598

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   tctgaaatggacatatttgtt 208
             |||||||||||||||||||||
Sbjct: 62839 tctgaaatggacatatttgtt 62819
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>emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chromosome 2, complete
             sequence
          Length = 195442

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   gacttggtttacaaaaaagaa 127
             |||||||||||||||||||||
Sbjct: 54601 gacttggtttacaaaaaagaa 54581
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>gb|AY954844.1| Arabidopsis thaliana hypothetical protein (At3g04820) mRNA, complete
            cds
          Length = 2148

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 18   tgagactgatgtatgtacatagtta 42
            ||||| |||||||||||||||||||
Sbjct: 1322 tgagaatgatgtatgtacatagtta 1346
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>gb|AY663851.1| Oryza sativa (japonica cultivar-group) SYD chromatin remodeling
            ATPase mRNA, partial cds
          Length = 8098

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 245  atagctgattctgaagatttattg 268
            |||||||||| |||||||||||||
Sbjct: 6915 atagctgattgtgaagatttattg 6938
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>gb|AC166932.6| Mus musculus chromosome 7, clone RP23-349I13, complete sequence
          Length = 226889

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     actgagactgatgtatgtac 35
              ||||||||||||||||||||
Sbjct: 184494 actgagactgatgtatgtac 184475
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>gb|AC113065.16| Mus musculus chromosome 7, clone RP23-263E7, complete sequence
          Length = 202134

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     actgagactgatgtatgtac 35
              ||||||||||||||||||||
Sbjct: 168480 actgagactgatgtatgtac 168499
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>gb|AC125142.4| Mus musculus BAC clone RP24-342G10 from chromosome 12, complete
             sequence
          Length = 174908

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   aatggacatatttgttgaaa 212
             ||||||||||||||||||||
Sbjct: 31317 aatggacatatttgttgaaa 31298
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>gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome 10, complete sequence
          Length = 166393

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    agcttaacaaagagcatcca 402
              ||||||||||||||||||||
Sbjct: 143557 agcttaacaaagagcatcca 143538
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>emb|AL356419.10| Human DNA sequence from clone RP11-99L6 on chromosome 10, complete
             sequence
          Length = 126232

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   ccttcctttgcctggctcag 317
             ||||||||||||||||||||
Sbjct: 90315 ccttcctttgcctggctcag 90334
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>gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 map q31-q35, complete
              sequence
          Length = 115948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    agaatgtcttggagaaggaactct 147
              ||||| ||||||||||||||||||
Sbjct: 104589 agaatatcttggagaaggaactct 104612
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>emb|BX901953.5| Zebrafish DNA sequence from clone CH211-18G18 in linkage group 1,
             complete sequence
          Length = 170758

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   catatttgttgaaacacttc 218
             ||||||||||||||||||||
Sbjct: 55771 catatttgttgaaacacttc 55790
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>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a
             novel gene, a non-POU domain containing octamer-binding
             protein (Nono) pseudogene, a Sin3-associated polypeptide
             18 (Sap18) pseudogene, the 5' end of a novel gene and a
             CpG island, complete sequence
          Length = 209175

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   attagcttaacaaagagcatccat 403
             ||||||| ||||||||||||||||
Sbjct: 47033 attagctcaacaaagagcatccat 47056
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>gb|AC025419.42| Homo sapiens 12 BAC RP11-230G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170331

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    agcttaacaaagagcatcca 402
              ||||||||||||||||||||
Sbjct: 125802 agcttaacaaagagcatcca 125821
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     ttgaaacacttccggaagaa 226
               ||||||||||||||||||||
Sbjct: 4011022 ttgaaacacttccggaagaa 4011003
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 245     atagctgattctgaagatttattg 268
               |||||||||| |||||||||||||
Sbjct: 8075232 atagctgattgtgaagatttattg 8075255
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>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 188972

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aacactgagactgatgtatg 32
             ||||||||||||||||||||
Sbjct: 58241 aacactgagactgatgtatg 58222
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>emb|BX276105.6| Zebrafish DNA sequence from clone CH211-194G2 in linkage group 1,
            complete sequence
          Length = 209486

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  catatttgttgaaacacttc 218
            ||||||||||||||||||||
Sbjct: 7321 catatttgttgaaacacttc 7302
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>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   atagctgattctgaagatttattg 268
             |||||||||| |||||||||||||
Sbjct: 99001 atagctgattgtgaagatttattg 99024
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>emb|AL844217.7| Zebrafish DNA sequence from clone DKEY-218L17, complete sequence
          Length = 246026

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    catatttgttgaaacacttc 218
              ||||||||||||||||||||
Sbjct: 176803 catatttgttgaaacacttc 176784
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>dbj|AK066536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070H05, full
            insert sequence
          Length = 2756

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 245  atagctgattctgaagatttattg 268
            |||||||||| |||||||||||||
Sbjct: 1012 atagctgattgtgaagatttattg 1035
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>gb|AC005659.3|AC005659 citb_161_g_12, complete sequence
          Length = 116058

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   ccttcctttgcctggctcag 317
             ||||||||||||||||||||
Sbjct: 22601 ccttcctttgcctggctcag 22582
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>emb|BX510908.8| Mouse DNA sequence from clone RP23-264F3 on chromosome 2, complete
             sequence
          Length = 80804

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   aaaaagaatgtcttggagaa 139
             ||||||||||||||||||||
Sbjct: 15575 aaaaagaatgtcttggagaa 15556
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>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence
          Length = 155483

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   ctctaacagatacttcaaaaaata 167
             |||||||||||| |||||||||||
Sbjct: 69137 ctctaacagatatttcaaaaaata 69114
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    ctaacagatacttcaaaaaataat 169
              |||||||| |||||||||||||||
Sbjct: 862094 ctaacagaaacttcaaaaaataat 862071
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     ttgaaacacttccggaagaa 226
               ||||||||||||||||||||
Sbjct: 3951435 ttgaaacacttccggaagaa 3951416
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>gb|AC132457.4| Mus musculus BAC clone RP23-140B24 from 7, complete sequence
          Length = 210092

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    actgagactgatgtatgtac 35
             ||||||||||||||||||||
Sbjct: 31558 actgagactgatgtatgtac 31577
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>gb|AC138328.3| Mus musculus BAC clone RP23-378F20 from 1, complete sequence
          Length = 153109

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 243    agatagctgattctgaagatttattgaa 270
              ||||||| ||| ||||||||||||||||
Sbjct: 122800 agatagcagatgctgaagatttattgaa 122773
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>gb|AC100561.13| Mus musculus chromosome 1, clone RP23-154C4, complete sequence
          Length = 207939

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 243  agatagctgattctgaagatttattgaa 270
            ||||||| ||| ||||||||||||||||
Sbjct: 6069 agatagcagatgctgaagatttattgaa 6042
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>emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-219E7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162472

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   tttattgaaggcagtgtaca 281
             ||||||||||||||||||||
Sbjct: 71557 tttattgaaggcagtgtaca 71538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,396,845
Number of Sequences: 3902068
Number of extensions: 5396845
Number of successful extensions: 105019
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104746
Number of HSP's gapped (non-prelim): 273
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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