Clone Name	bags4o22
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (...	359	6e-96
2	gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (...	353	4e-94
3	gb|AF033263.1|AF033263 Zea mays nonphototropic hypocotyl 1 (nph1...	78	3e-11
4	dbj|AK066816.1| Oryza sativa (japonica cultivar-group) cDNA clon...	72	2e-09
5	dbj|AK065596.1| Oryza sativa (japonica cultivar-group) cDNA clon...	72	2e-09
6	dbj|AB018444.1| Oryza sativa (japonica cultivar-group) mRNA for ...	72	2e-09
7	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
8	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
9	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	56	1e-04
10	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	56	1e-04
11	emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa...	56	1e-04
12	emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb...	56	1e-04
13	emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa...	56	1e-04
14	gb|AY109754.1| Zea mays CL1834_1 mRNA sequence	50	0.008
15	gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome	44	0.48
16	emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome...	44	0.48
17	emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 compl...	44	0.48
18	emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on ch...	42	1.9
19	emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 o...	42	1.9
20	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
21	dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome	42	1.9
22	dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
23	gb|CP000025.1| Campylobacter jejuni RM1221, complete genome	40	7.6
24	ref|NM_180881.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYP...	40	7.6
25	ref|NM_180879.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYP...	40	7.6
26	ref|NM_180880.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYP...	40	7.6
27	gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence	40	7.6
28	gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome ...	40	7.6
29	gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete...	40	7.6
30	emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chro...	40	7.6
31	emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on ch...	40	7.6
32	emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on ch...	40	7.6
33	emb|AL139075.2|CJ11168X2 Campylobacter jejuni subsp. jejuni NCTC...	40	7.6
34	gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, com...	40	7.6
35	emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 i...	40	7.6
36	gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence	40	7.6
37	gb|AC091554.5| Homo sapiens chromosome 8, clone RP11-155P23, com...	40	7.6
38	gb|AY093141.1| Arabidopsis thaliana unknown protein (At5g58140) ...	40	7.6
39	gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co...	40	7.6
40	gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, c...	40	7.6
41	emb|AL928537.12| Mouse DNA sequence from clone RP23-236E7 on chr...	40	7.6
42	dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	7.6
43	gb|AF053941.2|AF053941 Arabidopsis thaliana non phototropic hypo...	40	7.6
44	gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome	40	7.6
45	gb|AF002217.1|AF002217 Ralstonia eutropha megaplasmid pHG1 nitri...	40	7.6
46	gb|U79744.1|ATU79744 Arabidopsis thaliana putative serine/threon...	40	7.6
47	gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, comple...	40	7.6
48	gb|M91082.1|CULLINERTD Culex pipiens LINE repeat (Juan-C retropo...	40	7.6

---

>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
          Length = 3467

 Score =  359 bits (181), Expect = 6e-96
 Identities = 296/333 (88%), Gaps = 1/333 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttacacacccttcagcaggtaaaaccaggcaaaggacatttgccaacatcctacacaag 60
            |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 2853 gttacacacccttcag-aggtaaaaccaggcagaggacattcgccaacatcctacacaag 2911

                                                                        
Query: 61   gacatcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctacagg 120
            ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct: 2912 gacatcagatttcccgcgagtatatcggtgagcctcccagcaaggcagctgatatatagg 2971

                                                                        
Query: 121  ttgctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagataaaa 180
             |||| |||||||||||  |||||||  |||||||||| ||||| || ||||||||||||
Sbjct: 2972 ctgctacacagggatccttcgaataggctgggatcgtacgagggatcaaacgagataaaa 3031

                                                                        
Query: 181  caacacccgttcttccgcggcatcaactgggctcttgtgcgcggcacggctcctccgaag 240
             ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 3032 gaacaccctttcttccgcggcatcaactgggctctcgtgcgtggcacggctcctccaaag 3091

                                                                        
Query: 241  ctggacgctccactgttttccaaggacgtgggcaagggaatgggcgatgctgccgccgcc 300
            |||||||||||||||||  |  | |||  || ||||||||||||||||||||| || || 
Sbjct: 3092 ctggacgctccactgttcccggatgacacggacaagggaatgggcgatgctgctgctgct 3151

                                             
Query: 301  gataatggcaccgacatgttctgaacgaagaag 333
            |||| |  ||||||||||||||||| |||||||
Sbjct: 3152 gatactcacaccgacatgttctgaatgaagaag 3184

---

>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
          Length = 3422

 Score =  353 bits (178), Expect = 4e-94
 Identities = 239/258 (92%), Gaps = 1/258 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttacacacccttcagcaggtaaaaccaggcaaaggacatttgccaacatcctacacaag 60
            |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2790 gttacacacccttcag-aggtaaaaccaggcaaaggacattcgccaacatcctacacaag 2848

                                                                        
Query: 61   gacatcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctacagg 120
            ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 2849 gacatcagatttcccgcgagtatatcggtgagcctcccagcaaggcagctgatatacagg 2908

                                                                        
Query: 121  ttgctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagataaaa 180
             |||| |||||||||||  |||||||  |||||||||||||||| || ||||||||||||
Sbjct: 2909 ctgctacacagggatccttcgaataggctgggatcgtatgagggatcaaacgagataaaa 2968

                                                                        
Query: 181  caacacccgttcttccgcggcatcaactgggctcttgtgcgcggcacggctcctccgaag 240
             | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2969 gagcacccattcttccgcggcatcaactgggctcttgtgcgcggcacggctcctcccaag 3028

                              
Query: 241  ctggacgctccactgttt 258
            ||||| ||||||||||||
Sbjct: 3029 ctggatgctccactgttt 3046



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 446  taggacggtaggagatggaataa 468
            |||||||||||||||||||||||
Sbjct: 3216 taggacggtaggagatggaataa 3238

---

>gb|AF033263.1|AF033263 Zea mays nonphototropic hypocotyl 1 (nph1) mRNA, complete cds
          Length = 3330

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 172/215 (80%), Gaps = 1/215 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttacacacccttcagcaggtaaaaccaggcaaaggacatttgccaacatcctacacaag 60
            |||| ||||||||||| ||| ||||| || |||||||||||||| || || || ||||||
Sbjct: 2831 gttatacacccttcag-agggaaaacaagacaaaggacatttgctaatattctgcacaag 2889

                                                                        
Query: 61   gacatcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatctacagg 120
            || |||||||| || || || |||  |||||||||  | || ||||||||||| ||| ||
Sbjct: 2890 gatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccgg 2949

                                                                        
Query: 121  ttgctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgagataaaa 180
            ||||| ||| | || || || |||||  | || || ||||||||  | |  ||||| |||
Sbjct: 2950 ttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaa 3009

                                               
Query: 181  caacacccgttcttccgcggcatcaactgggctct 215
            |||||||| ||||| || ||||| |||||||||||
Sbjct: 3010 caacaccccttctttcgtggcataaactgggctct 3044

---

>dbj|AK066816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081N02, full
            insert sequence
          Length = 2409

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Plus

                                                                        
Query: 22   aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
            ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 1760 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 1819

                                                                    
Query: 82   atatcggtgagcctcccagctaggcagctgatctacaggttgctgcacagggatcc 137
            |||||||| |||||  | || |||||||| || || |||||||| || ||||||||
Sbjct: 1820 atatcggtcagcctagcggcgaggcagctaatgtataggttgctacatagggatcc 1875

---

>dbj|AK065596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026O13, full
            insert sequence
          Length = 3472

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Plus

                                                                        
Query: 22   aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
            ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 2823 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 2882

                                                                    
Query: 82   atatcggtgagcctcccagctaggcagctgatctacaggttgctgcacagggatcc 137
            |||||||| |||||  | || |||||||| || || |||||||| || ||||||||
Sbjct: 2883 atatcggtcagcctagcggcgaggcagctaatgtataggttgctacatagggatcc 2938

---

>dbj|AB018444.1| Oryza sativa (japonica cultivar-group) mRNA for nonphototrophic
            hypocotyl 1a, complete cds
          Length = 3381

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Plus

                                                                        
Query: 22   aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
            ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 2726 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 2785

                                                                    
Query: 82   atatcggtgagcctcccagctaggcagctgatctacaggttgctgcacagggatcc 137
            |||||||| |||||  | || |||||||| || || |||||||| || ||||||||
Sbjct: 2786 atatcggtcagcctagcggcgaggcagctaatgtataggttgctacatagggatcc 2841

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 88137 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 88196

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 88197 atatcggt 88204

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 92277 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 92336

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 92337 atatcggt 92344

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 92277 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 92336

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 92337 atatcggt 92344

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 88137 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 88196

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 88197 atatcggt 88204

---

>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 92277 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 92336

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 92337 atatcggt 92344

---

>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 88137 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 88196

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 88197 atatcggt 88204

---

>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 22    aaaaccaggcaaaggacatttgccaacatcctacacaaggacatcagattccccgcaagt 81
             ||||| |||||| |||||||||| || ||| | |||||||| |||||||| || || |||
Sbjct: 39746 aaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagt 39805

                     
Query: 82    atatcggt 89
             ||||||||
Sbjct: 39806 atatcggt 39813

---

>gb|AY109754.1| Zea mays CL1834_1 mRNA sequence
          Length = 3290

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 127/161 (78%)
 Strand = Plus / Plus

                                                                        
Query: 55   cacaaggacatcagattccccgcaagtatatcggtgagcctcccagctaggcagctgatc 114
            |||||||| |||||||| || || || |||  |||||||||  | || ||||||||||| 
Sbjct: 2884 cacaaggatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgata 2943

                                                                        
Query: 115  tacaggttgctgcacagggatcccgcgaatagaatgggatcgtatgaggggtcgaacgag 174
            ||| ||||||| ||| | || || || |||||  | || || ||||||||  | |  |||
Sbjct: 2944 taccggttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggag 3003

                                                     
Query: 175  ataaaacaacacccgttcttccgcggcatcaactgggctct 215
            || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 3004 atcaaacaacaccccttctttcgtggcataaactgggctct 3044

---

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 285    cgatgctgccgccgccgataat 306
              ||||||||||||||||||||||
Sbjct: 591499 cgatgctgccgccgccgataat 591478

---

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 285    cgatgctgccgccgccgataat 306
              ||||||||||||||||||||||
Sbjct: 248224 cgatgctgccgccgccgataat 248203

---

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 285    cgatgctgccgccgccgataat 306
              ||||||||||||||||||||||
Sbjct: 248282 cgatgctgccgccgccgataat 248261

---

>emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on chromosome 9 Contains the 5'
              end of a variant of a novel gene (FLJ90578) and a CpG
              island, complete sequence
          Length = 174535

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 516    attaaataagcaattaagatg 536
              |||||||||||||||||||||
Sbjct: 122308 attaaataagcaattaagatg 122288

---

>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13
             Contains STS and GSSs, complete sequence
          Length = 137739

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   ggaaagacatgccaaagatgt 360
             |||||||||||||||||||||
Sbjct: 48546 ggaaagacatgccaaagatgt 48566

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 324     aacgaagaaggtggatggaaa 344
               |||||||||||||||||||||
Sbjct: 9757615 aacgaagaaggtggatggaaa 9757635

---

>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 217     gtgcgcggcacggctcctccg 237
               |||||||||||||||||||||
Sbjct: 1577548 gtgcgcggcacggctcctccg 1577568

---

>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0040N23
          Length = 101061

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   aacgaagaaggtggatggaaa 344
             |||||||||||||||||||||
Sbjct: 30034 aacgaagaaggtggatggaaa 30054

---

>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     tcagcaggtaaaaccaggcaaagg 36
              |||||| |||||||||||||||||
Sbjct: 592066 tcagcatgtaaaaccaggcaaagg 592089

---

>ref|NM_180881.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
            AT5G58140 (PHOT2) transcript variant AT5G58140.3 mRNA,
            complete cds
          Length = 6033

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   aggcaaaggacatttgccaacatc 51
            ||||||| ||||||||||||||||
Sbjct: 2592 aggcaaaagacatttgccaacatc 2615

---

>ref|NM_180879.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
            AT5G58140 (PHOT2) transcript variant AT5G58140.1 mRNA,
            complete cds
          Length = 5977

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   aggcaaaggacatttgccaacatc 51
            ||||||| ||||||||||||||||
Sbjct: 2536 aggcaaaagacatttgccaacatc 2559

---

>ref|NM_180880.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
            AT5G58140 (PHOT2) transcript variant AT5G58140.2 mRNA,
            complete cds
          Length = 6033

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   aggcaaaggacatttgccaacatc 51
            ||||||| ||||||||||||||||
Sbjct: 2592 aggcaaaagacatttgccaacatc 2615

---

>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence
          Length = 142512

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   ggctgttttctttttctgtt 433
             ||||||||||||||||||||
Sbjct: 35014 ggctgttttctttttctgtt 34995

---

>gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome 2, complete sequence
          Length = 205920

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    agaaggtggatggaaagaca 348
              ||||||||||||||||||||
Sbjct: 153571 agaaggtggatggaaagaca 153552

---

>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gggcgatgctgccgccgccg 301
              ||||||||||||||||||||
Sbjct: 256365 gggcgatgctgccgccgccg 256384

---

>emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chromosome 1 Contains the
             PRELP gene for proline arginine-rich end leucine-rich
             repeat protein and the OPTC gene for opticin, complete
             sequence
          Length = 162436

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   ctggctgttttctttttctg 431
             ||||||||||||||||||||
Sbjct: 84225 ctggctgttttctttttctg 84244

---

>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the
             gene for calcium/calmodulin-dependent protein kinase II
             (CaMKIINalpha), the gene for a novel protein (FLJ12875), a
              ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA
             gene for cytidine deaminase, the PINK1 gene for PTEN
             induced putative kinase 1, a novel gene (FLJ00387), the
             DDOST gene for dolichyl-diphosphooligosaccharide-protein
             glycosyltransferase and the 3' end of the KIF17 gene for
             kinesin family member 17, complete sequence
          Length = 195076

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 405   gttgttgctggctgttttcttttt 428
             |||| |||||||||||||||||||
Sbjct: 58585 gttggtgctggctgttttcttttt 58562

---

>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the
              3' end of a novel gene, the CENJP gene for centromere
              protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a
              pseudogene similar to part of solute carrier family 25
              (mitochondrial carrier; ornithine transporter) member 15
              (SLC25A15), a TPTE and PTEN homologous inositol lipid
              phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34
              (RPL34) pseudogene and 2 CpG islands, complete sequence
          Length = 167319

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    ggctgttttctttttctgtt 433
              ||||||||||||||||||||
Sbjct: 131061 ggctgttttctttttctgtt 131042

---

>emb|AL139075.2|CJ11168X2 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              2/6
          Length = 308601

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     tcagcaggtaaaaccaggcaaagg 36
              |||||| |||||||||||||||||
Sbjct: 199547 tcagcatgtaaaaccaggcaaagg 199570

---

>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence
          Length = 183097

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   gttgttggttgttgctggct 417
             ||||||||||||||||||||
Sbjct: 36844 gttgttggttgttgctggct 36825

---

>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2,
             complete sequence
          Length = 159100

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   acgaagaaggtggatggaaa 344
             ||||||||||||||||||||
Sbjct: 74394 acgaagaaggtggatggaaa 74413

---

>gb|DQ068068.1| Uncultured bacterium BAC17H8, complete sequence
          Length = 135294

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    gcgatgctgccgccgccgat 303
              ||||||||||||||||||||
Sbjct: 104487 gcgatgctgccgccgccgat 104468

---

>gb|AC091554.5| Homo sapiens chromosome 8, clone RP11-155P23, complete sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    gttgttggttgttgctggct 417
              ||||||||||||||||||||
Sbjct: 101549 gttgttggttgttgctggct 101530

---

>gb|AY093141.1| Arabidopsis thaliana unknown protein (At5g58140) mRNA, complete cds
          Length = 3108

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   aggcaaaggacatttgccaacatc 51
            ||||||| ||||||||||||||||
Sbjct: 2667 aggcaaaagacatttgccaacatc 2690

---

>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 322    tgaacgaagaaggtggatggaaag 345
              |||| |||||||||||||||||||
Sbjct: 138221 tgaaagaagaaggtggatggaaag 138198

---

>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence
          Length = 174914

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    tgaacgaagaaggtggatggaaag 345
              |||| |||||||||||||||||||
Sbjct: 165456 tgaaagaagaaggtggatggaaag 165479

---

>emb|AL928537.12| Mouse DNA sequence from clone RP23-236E7 on chromosome 2, complete
            sequence
          Length = 190808

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  agaaggtggatggaaagaca 348
            ||||||||||||||||||||
Sbjct: 4364 agaaggtggatggaaagaca 4345

---

>dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7
          Length = 87090

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   aggcaaaggacatttgccaacatc 51
            ||||||| ||||||||||||||||
Sbjct: 2634 aggcaaaagacatttgccaacatc 2657

---

>gb|AF053941.2|AF053941 Arabidopsis thaliana non phototropic hypocotyl 1-like (NPL1) mRNA,
            complete cds
          Length = 2890

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   aggcaaaggacatttgccaacatc 51
            ||||||| ||||||||||||||||
Sbjct: 2431 aggcaaaagacatttgccaacatc 2454

---

>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 328     aagaaggtggatggaaagac 347
               ||||||||||||||||||||
Sbjct: 1407343 aagaaggtggatggaaagac 1407362

---

>gb|AF002217.1|AF002217 Ralstonia eutropha megaplasmid pHG1 nitric oxide reductase (norB)
            gene, complete cds
          Length = 3713

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 282  gggcgatgctgccgccgccg 301
            ||||||||||||||||||||
Sbjct: 3676 gggcgatgctgccgccgccg 3657

---

>gb|U79744.1|ATU79744 Arabidopsis thaliana putative serine/threonine protein kinase
           (AtKin7) mRNA, partial cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 28  aggcaaaggacatttgccaacatc 51
           ||||||| ||||||||||||||||
Sbjct: 750 aggcaaaagacatttgccaacatc 773

---

>gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, complete sequence
          Length = 59902

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   gctggctgttttctttttct 430
             ||||||||||||||||||||
Sbjct: 41031 gctggctgttttctttttct 41012

---

>gb|M91082.1|CULLINERTD Culex pipiens LINE repeat (Juan-C retroposon) encoding DNA-binding
           protein and reverse transcriptase genes, complete cds
          Length = 4679

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 414 ggctgttttctttttctgtt 433
           ||||||||||||||||||||
Sbjct: 445 ggctgttttctttttctgtt 426


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,701,645
Number of Sequences: 3902068
Number of extensions: 4701645
Number of successful extensions: 97844
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97533
Number of HSP's gapped (non-prelim): 309
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---