ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCL2_CAVPO (Q08782) Small inducible cytokine A2 precursor (CCL2)... 29 5.4
2TBCD8_HUMAN (O95759) TBC1 domain family member 8 (Vascular Rab-G... 29 5.4
3TBCD8_MOUSE (Q9Z1A9) TBC1 domain family member 8 (Vascular Rab-G... 28 7.1
4SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 28 9.2
5PPME1_PONPY (Q5R4F9) Protein phosphatase methylesterase 1 (EC 3.... 28 9.2
6PPME1_MOUSE (Q8BVQ5) Protein phosphatase methylesterase 1 (EC 3.... 28 9.2
7PPME1_HUMAN (Q9Y570) Protein phosphatase methylesterase 1 (EC 3.... 28 9.2
8PPME1_BOVIN (Q58DN4) Protein phosphatase methylesterase 1 (EC 3.... 28 9.2

>CCL2_CAVPO (Q08782) Small inducible cytokine A2 precursor (CCL2) (Monocyte|
           chemotactic protein 1) (MCP-1) (Monocyte chemoattractant
           protein 1)
          Length = 120

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 265 VLRCRWLVVAVFISLPAAAIDGLDI*PCSYRFHWQLLFGLF--LERCSSSTC 414
           VL C  ++ A F SL  A  DG++   C Y F+ Q+        ER +SS C
Sbjct: 6   VLLCLLVIEATFCSLLMAQPDGVNTPTCCYTFNKQIPLKRVKGYERITSSRC 57



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>TBCD8_HUMAN (O95759) TBC1 domain family member 8 (Vascular|
           Rab-GAP/TBC-containing protein) (AD 3)
          Length = 897

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 260 LPSSAAGGWWLLYSSAYQLRPSTA*IYDRVVTGFTGSCCL 379
           +P S  G  WLL+S A     S    Y  +V    G CCL
Sbjct: 263 IPESLRGRLWLLFSDAVTDLASHPGYYGNLVEESLGKCCL 302



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>TBCD8_MOUSE (Q9Z1A9) TBC1 domain family member 8 (Vascular|
           Rab-GAP/TBC-containing protein) (BUB2-like protein 1)
          Length = 891

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 260 LPSSAAGGWWLLYSSAYQLRPSTA*IYDRVVTGFTGSCCL 379
           +P S  G  WLL+S A     S    Y  +V    G CCL
Sbjct: 262 IPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCL 301



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>SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1068

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -3

Query: 418  RCMCYYCISPKTIQTAAASETGNYTVIYLSRRWPQLVG**IQQPPTTGSGGRQDSXEMYK 239
            RC   YC +   +Q      + +  + YLS RW   VG        TG  G  D  EM  
Sbjct: 947  RCHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVG---NMYLITGEHGDTDLEEMLS 1003

Query: 238  G 236
            G
Sbjct: 1004 G 1004



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>PPME1_PONPY (Q5R4F9) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 385

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 292 QPPTTGSGGRQDSXEMYKGPG 230
           +PP  GSGG Q   +M  GPG
Sbjct: 15  RPPLPGSGGSQSGAKMRMGPG 35



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>PPME1_MOUSE (Q8BVQ5) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 385

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 292 QPPTTGSGGRQDSXEMYKGPG 230
           +PP  GSGG Q   +M  GPG
Sbjct: 15  RPPLPGSGGSQSGAKMRMGPG 35



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>PPME1_HUMAN (Q9Y570) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 385

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 292 QPPTTGSGGRQDSXEMYKGPG 230
           +PP  GSGG Q   +M  GPG
Sbjct: 15  RPPLPGSGGSQSGAKMRMGPG 35



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>PPME1_BOVIN (Q58DN4) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 379

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 292 QPPTTGSGGRQDSXEMYKGPG 230
           +PP  GSGG Q   +M  GPG
Sbjct: 15  RPPLPGSGGSQSGAKMRMGPG 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,643,091
Number of Sequences: 219361
Number of extensions: 603624
Number of successful extensions: 1323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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