ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5d14 |
|---|---|
| Clone Library Name | barley_pub |
>RS7_HORVU (Q949H0) 40S ribosomal protein S7| Length = 191 Score = 153 bits (387), Expect = 2e-37 Identities = 77/83 (92%), Positives = 77/83 (92%) Frame = +1 Query: 1 AVSALAPXTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLET 180 AV TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLET Sbjct: 109 AVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLET 168 Query: 181 FSAVYRRLCGKDVVFEYPVAETA 249 FSAVYRRLCGKDVVFEYPVAETA Sbjct: 169 FSAVYRRLCGKDVVFEYPVAETA 191
>RS7_SECCE (Q9XET4) 40S ribosomal protein S7| Length = 192 Score = 143 bits (361), Expect = 2e-34 Identities = 67/75 (89%), Positives = 74/75 (98%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHDG+LEDVVYPAEIVGKRVRYRLDG+K+IKI+LDP ERNNTEYKL+TF+AVYRRL Sbjct: 118 TLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRL 177 Query: 205 CGKDVVFEYPVAETA 249 CGKDVV+EYPVAETA Sbjct: 178 CGKDVVYEYPVAETA 192
>RS7_ORYSA (Q8LJU5) 40S ribosomal protein S7| Length = 192 Score = 140 bits (352), Expect = 2e-33 Identities = 65/75 (86%), Positives = 72/75 (96%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHDGILEDVVYPAEIVGKRVRY LDG K++KI+LDPKERNNTEYKL+TFS+VYRRL Sbjct: 118 TLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRL 177 Query: 205 CGKDVVFEYPVAETA 249 CGKDVVF+YP+ ETA Sbjct: 178 CGKDVVFDYPMTETA 192
>RS7_BRAOL (Q9XH45) 40S ribosomal protein S7| Length = 191 Score = 122 bits (305), Expect = 6e-28 Identities = 55/73 (75%), Positives = 65/73 (89%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLT+VH+ +LEDV YPAEIVGKR RYR+DG K++K+YL+PKERNNTEYKLET VYR+L Sbjct: 118 TLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKL 177 Query: 205 CGKDVVFEYPVAE 243 GKDVVFEYPVA+ Sbjct: 178 TGKDVVFEYPVAD 190
>RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7| Length = 190 Score = 120 bits (302), Expect = 1e-27 Identities = 56/81 (69%), Positives = 69/81 (85%) Frame = +1 Query: 1 AVSALAPXTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLET 180 AV TLTAVHD +LED+VYPAEIVGKRVRYRLDG+K++K++LDPK +N+TE KLET Sbjct: 110 AVQRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLET 169 Query: 181 FSAVYRRLCGKDVVFEYPVAE 243 F+ VYR+L GKDVVFE+P+ E Sbjct: 170 FAGVYRKLSGKDVVFEFPLTE 190
>RS7_XENLA (P02362) 40S ribosomal protein S7 (S8)| Length = 194 Score = 106 bits (264), Expect = 3e-23 Identities = 46/70 (65%), Positives = 63/70 (90%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+VYP+EIVG+R+R +LDG+++IK++LD ++NN E+K+ETFS VY++L Sbjct: 121 TLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDVVFE+P Sbjct: 181 TGKDVVFEFP 190
>RS7_ICTPU (Q90YR7) 40S ribosomal protein S7| Length = 194 Score = 103 bits (258), Expect = 2e-22 Identities = 45/70 (64%), Positives = 62/70 (88%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+VYP+EIVGKR+R +LD +++IK++LD ++NN E+K+ETF+ VY++L Sbjct: 121 TLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDVVFE+P Sbjct: 181 TGKDVVFEFP 190
>RS7_RAT (P62083) 40S ribosomal protein S7 (S8)| Length = 194 Score = 103 bits (256), Expect = 3e-22 Identities = 45/70 (64%), Positives = 62/70 (88%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY++L Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDV FE+P Sbjct: 181 TGKDVNFEFP 190
>RS7_MOUSE (P62082) 40S ribosomal protein S7| Length = 194 Score = 103 bits (256), Expect = 3e-22 Identities = 45/70 (64%), Positives = 62/70 (88%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY++L Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDV FE+P Sbjct: 181 TGKDVNFEFP 190
>RS7_HUMAN (P62081) 40S ribosomal protein S7| Length = 194 Score = 103 bits (256), Expect = 3e-22 Identities = 45/70 (64%), Positives = 62/70 (88%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY++L Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDV FE+P Sbjct: 181 TGKDVNFEFP 190
>RS7_FELCA (Q5RT64) 40S ribosomal protein S7| Length = 194 Score = 103 bits (256), Expect = 3e-22 Identities = 45/70 (64%), Positives = 62/70 (88%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+V+P+EIVGKR+R +LDG+++IK++LD ++NN E+K+ETFS VY++L Sbjct: 121 TLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDV FE+P Sbjct: 181 TGKDVNFEFP 190
>RS7_FUGRU (P50894) 40S ribosomal protein S7| Length = 194 Score = 101 bits (252), Expect = 8e-22 Identities = 43/70 (61%), Positives = 62/70 (88%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLT+VHD ILED+V+P+EIVGKR+R ++D +++IK++LD ++NN E+K+ETFS VY++L Sbjct: 121 TLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDVVFE+P Sbjct: 181 TGKDVVFEFP 190
>RS7_NEUCR (O43105) 40S ribosomal protein S7| Length = 202 Score = 100 bits (249), Expect = 2e-21 Identities = 45/71 (63%), Positives = 60/71 (84%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD IL D+VYP EIVGKR+R + DG+K +K+ LD KER + +Y+L+T+SAVYRRL Sbjct: 127 TLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRL 186 Query: 205 CGKDVVFEYPV 237 GK+V+FE+P+ Sbjct: 187 TGKNVLFEFPL 197
>RS7_BRARE (P62084) 40S ribosomal protein S7| Length = 194 Score = 99.8 bits (247), Expect = 3e-21 Identities = 42/70 (60%), Positives = 61/70 (87%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLT VHD ILED+V+P+EIVGKR+R +LD +++IK++LD ++NN E+K+ETF+ VY++L Sbjct: 121 TLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKL 180 Query: 205 CGKDVVFEYP 234 GKDV+FE+P Sbjct: 181 TGKDVIFEFP 190
>RS7_DROYA (P62085) 40S ribosomal protein S7| Length = 194 Score = 94.7 bits (234), Expect = 1e-19 Identities = 39/70 (55%), Positives = 61/70 (87%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAV+D ILED+V+PAEIVGKR+R +LDG++++K++LD ++ E+K++TF++VY++L Sbjct: 119 TLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKL 178 Query: 205 CGKDVVFEYP 234 G+DV FE+P Sbjct: 179 TGRDVTFEFP 188
>RS7_DROME (Q9VA91) 40S ribosomal protein S7| Length = 194 Score = 94.7 bits (234), Expect = 1e-19 Identities = 39/70 (55%), Positives = 61/70 (87%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAV+D ILED+V+PAEIVGKR+R +LDG++++K++LD ++ E+K++TF++VY++L Sbjct: 119 TLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKL 178 Query: 205 CGKDVVFEYP 234 G+DV FE+P Sbjct: 179 TGRDVTFEFP 188
>RS7_CULQU (Q9NB21) 40S ribosomal protein S7| Length = 192 Score = 94.7 bits (234), Expect = 1e-19 Identities = 39/70 (55%), Positives = 61/70 (87%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAV+D ILED+V+PAE+VGKR+R +LDG+++IK++LD ++ E+K++TF++VY++L Sbjct: 119 TLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKL 178 Query: 205 CGKDVVFEYP 234 G+DV FE+P Sbjct: 179 TGRDVTFEFP 188
>RS7_SCHPO (Q10101) 40S ribosomal protein S7| Length = 195 Score = 94.7 bits (234), Expect = 1e-19 Identities = 42/72 (58%), Positives = 56/72 (77%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVH+ ILED+V+P EI+GKR R DG K IK++LD ++ N +YKL +FS+VY +L Sbjct: 119 TLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKL 178 Query: 205 CGKDVVFEYPVA 240 GK+V FE+PVA Sbjct: 179 TGKNVTFEFPVA 190
>RS7_SPOFR (Q962S0) 40S ribosomal protein S7| Length = 190 Score = 92.0 bits (227), Expect = 6e-19 Identities = 38/70 (54%), Positives = 60/70 (85%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLT+V+D ILED+V+PAEIVGKR+R +LDG+++IK++LD ++ E+K++TF +VY++L Sbjct: 117 TLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKL 176 Query: 205 CGKDVVFEYP 234 G++V FE+P Sbjct: 177 TGREVTFEFP 186
>RS7_MANSE (P48155) 40S ribosomal protein S7| Length = 190 Score = 92.0 bits (227), Expect = 6e-19 Identities = 38/70 (54%), Positives = 60/70 (85%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLT+V+D ILED+V+PAEIVGKR+R +LDG+++IK++LD ++ E+K++TF +VY++L Sbjct: 117 TLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKL 176 Query: 205 CGKDVVFEYP 234 G++V FE+P Sbjct: 177 TGREVTFEFP 186
>RS7_ANOGA (P33514) 40S ribosomal protein S7| Length = 192 Score = 91.7 bits (226), Expect = 8e-19 Identities = 37/69 (53%), Positives = 60/69 (86%) Frame = +1 Query: 28 LTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLC 207 +TAV+D ILED+V+PAE+VGKR+R +LDG+++IK++LD ++ E+K++TF++VY++L Sbjct: 120 VTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLT 179 Query: 208 GKDVVFEYP 234 G+DV FE+P Sbjct: 180 GRDVTFEFP 188
>RS7A_YEAST (P26786) 40S ribosomal protein S7-A (RP30)| Length = 189 Score = 90.9 bits (224), Expect = 1e-18 Identities = 43/70 (61%), Positives = 53/70 (75%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD ILED+V+P EIVGKRVRY + G K+ K+ LD K+ +YKLE+F AVY +L Sbjct: 116 TLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKL 175 Query: 205 CGKDVVFEYP 234 GK +VFE P Sbjct: 176 TGKQIVFEIP 185
>RS7_CAEEL (Q23312) 40S ribosomal protein S7| Length = 194 Score = 90.5 bits (223), Expect = 2e-18 Identities = 39/70 (55%), Positives = 55/70 (78%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD L+++VYPAE+VG+R+R +LDG KV K++LD + N +K+ F++VYR+L Sbjct: 121 TLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKL 180 Query: 205 CGKDVVFEYP 234 GKDV FE+P Sbjct: 181 TGKDVTFEFP 190
>RS7B_YEAST (P48164) 40S ribosomal protein S7-B| Length = 190 Score = 90.5 bits (223), Expect = 2e-18 Identities = 42/70 (60%), Positives = 53/70 (75%) Frame = +1 Query: 25 TLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRL 204 TLTAVHD +LED+V+P EIVGKRVRY + G K+ K+ LD K+ +YKLE+F AVY +L Sbjct: 117 TLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKL 176 Query: 205 CGKDVVFEYP 234 GK +VFE P Sbjct: 177 TGKQIVFEIP 186
>LEU1_BUCAI (Q9ZEY8) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 519 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Frame = +1 Query: 43 DGILE-----DVVYPAEIVGKRVRYRL---DGAKVIKIYLDPKERNNTEYKLETFSAVYR 198 DG+L+ +++ P+ I K V+ L G +K Y+D NN++Y ++ + Sbjct: 302 DGVLKNRKNYEIMEPSSIGLKEVKLNLTSRSGRAAVKHYMDEMGYNNSDYNIDELYTAFL 361 Query: 199 RLCG-KDVVFEYPVAETA 249 +L K VF+Y + A Sbjct: 362 KLADKKGQVFDYDLEALA 379
>SCO1_HUMAN (O75880) SCO1 protein homolog, mitochondrial precursor| Length = 301 Score = 29.3 bits (64), Expect = 5.1 Identities = 22/65 (33%), Positives = 26/65 (40%) Frame = +2 Query: 53 WRMLCTQLRLWGSASGTVWMVPRSSRSTWTQRSATTLNTSWRPSLQSTAGFAGKTLSLST 232 WR L L WG A GT ++ R + R A S RP G+ T LST Sbjct: 20 WRFLPRGLEFWGPAEGTARVLLRQ----FCARQAEAWRASGRP------GYCLGTRPLST 69 Query: 233 LWPKP 247 P P Sbjct: 70 ARPPP 74
>ILVD_METCA (Q606D6) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 562 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 1 AVSALAPXTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKV 123 AV L HDG DVV E VG R +R+D A++ Sbjct: 144 AVFVYGGTILPGCHDGKKLDVVSVFEAVGARANHRIDDAEL 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,286,392 Number of Sequences: 219361 Number of extensions: 1479777 Number of successful extensions: 3996 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3995 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
