ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags5d14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ315794.1|HVU315794 Hordeum vulgare mRNA for Ribosomal protein S7 (rps7 gene) Length = 852 Score = 868 bits (438), Expect = 0.0 Identities = 445/446 (99%), Gaps = 1/446 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 agcgccctcgcaccag-aaccctgacagctgttcatgatggtatcttggaggatgttgtg 456 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 516 Query: 127 aagatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctct 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 517 aagatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctct 576 Query: 187 gcagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaacc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 577 gcagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaacc 636 Query: 247 gcatgaagaccaatgccttgaatgtctccatttcatatcttcgtatccaaatgttttggt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 gcatgaagaccaatgccttgaatgtctccatttcatatcttcgtatccaaatgttttggt 696 Query: 307 tgatgcttcagttagttgtgctatcaatgtattccagaaacatagttttgttaacaacct 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 697 tgatgcttcagttagttgtgctatcaatgtattccagaaacatagttttgttaacaacct 756 Query: 367 gggtttaggaaagtttgatggagatggcaatgaacgtgaacaatgttaaagttttgagca 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 gggtttaggaaagtttgatggagatggcaatgaacgtgaacaatgttaaagttttgagca 816 Query: 427 tttaaattatgaacgtctgctcggtt 452 |||||||||||||||||||||||||| Sbjct: 817 tttaaattatgaacgtctgctcggtt 842
>gb|AF542971.1| Triticum aestivum ribosomal protein S7 mRNA, partial cds Length = 392 Score = 527 bits (266), Expect = e-146 Identities = 337/358 (94%), Gaps = 2/358 (0%) Strand = Plus / Plus Query: 84 ggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggaccc 143 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 ggggaagcgtgtcagataccgtttggatggtgccaaggtcatcaagatctacttggaccc 62 Query: 144 aaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggct 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 aaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggct 122 Query: 204 ttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaagaccaatgcc 263 ||| |||||||||||||||||||||||||||||| | |||||||| |||||| | ||||| Sbjct: 123 ttgtgggaaagacgttgtctttgagtaccctgtgactgaaaccgcctgaagatccatgcc 182 Query: 264 ttgaatgtctccatttcatatc-ttcgtatccaaatgttttggttgatgcttcagttagt 322 |||||||||||||||||||||| ||| ||||||||||||||||||| | | |||||| Sbjct: 183 ttgaatgtctccatttcatatctttctgatccaaatgttttggttgaggtcttggttagt 242 Query: 323 tgtgctatcaatgtattccagaaacatagttttgttaacaacctgggtttaggaaagttt 382 ||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||| Sbjct: 243 tgtgctatcaatgtattccagaaacatagttttgttaactatctggggttagg-aagttt 301 Query: 383 gatggagatggcaatgaacgtgaacaatgttaaagttttgagcatttaaattatgaac 440 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 gatgaagatggcaatgaacgtgaacaatgttaaagttttgagcatttaaattatgaac 359
>gb|AY290724.1| Triticum aestivum ribosomal protein S7-like mRNA, partial sequence Length = 393 Score = 527 bits (266), Expect = e-146 Identities = 337/358 (94%), Gaps = 2/358 (0%) Strand = Plus / Plus Query: 84 ggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggaccc 143 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4 ggggaagcgtgtcagataccgtttggatggtgccaaggtcatcaagatctacttggaccc 63 Query: 144 aaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggct 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 aaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggct 123 Query: 204 ttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaagaccaatgcc 263 ||| |||||||||||||||||||||||||||||| | |||||||| |||||| | ||||| Sbjct: 124 ttgtgggaaagacgttgtctttgagtaccctgtgactgaaaccgcctgaagatccatgcc 183 Query: 264 ttgaatgtctccatttcatatc-ttcgtatccaaatgttttggttgatgcttcagttagt 322 |||||||||||||||||||||| ||| ||||||||||||||||||| | | |||||| Sbjct: 184 ttgaatgtctccatttcatatctttctgatccaaatgttttggttgaggtcttggttagt 243 Query: 323 tgtgctatcaatgtattccagaaacatagttttgttaacaacctgggtttaggaaagttt 382 ||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||| Sbjct: 244 tgtgctatcaatgtattccagaaacatagttttgttaactatctggggttagg-aagttt 302 Query: 383 gatggagatggcaatgaacgtgaacaatgttaaagttttgagcatttaaattatgaac 440 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 gatgaagatggcaatgaacgtgaacaatgttaaagttttgagcatttaaattatgaac 360
>gb|AY846832.1| Triticum aestivum ribosomal protein S7 mRNA, complete cds Length = 600 Score = 416 bits (210), Expect = e-113 Identities = 240/249 (96%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 agcgccctcgcaccagga-ccctgacagctgttcatgatggtatcttggaggatgttgtg 410 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 411 tacccagctgagattgtggggaagcgtgtcaggtaccgtttggatggtgccaaggtcatc 470 Query: 127 aagatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctct 186 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 471 aagatctacttggacccgaaggagcgcaacaacactgagtacaagctggagaccttctct 530 Query: 187 gcagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaacc 246 |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct: 531 gcagtctaccgcaggctttgtgggaaagacgttgtctttgagtaccctgtgactgaaacc 590 Query: 247 gcatgaaga 255 || |||||| Sbjct: 591 gcctgaaga 599
>dbj|AK122143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J20, full insert sequence Length = 966 Score = 272 bits (137), Expect = 9e-70 Identities = 222/249 (89%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || ||||||||||||||||||||||||||||| || Sbjct: 407 agcgccctcgcacaag-aactcttactgctgttcatgatggtatcttggaggatgtagtc 465 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 466 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 525 Query: 127 aagatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctct 186 ||||| | |||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 526 aagattttcttggacccaaaggagcgcaacaataccgaatacaagctcgagaccttctcc 585 Query: 187 gcagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaacc 246 || ||||||||||||||||| |||||||| |||| ||||||||||||| || | ||||| Sbjct: 586 gcggtctaccgcaggctttgtgggaaagatgttgcctttgagtaccctatgactgaaact 645 Query: 247 gcatgaaga 255 || |||||| Sbjct: 646 gcttgaaga 654 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 403 tgaacaatgttaaagttttgagcatttaaattat 436 |||||||||||||||||||| ||||||||||||| Sbjct: 753 tgaacaatgttaaagttttgggcatttaaattat 786
>dbj|AK059192.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H09, full insert sequence Length = 830 Score = 272 bits (137), Expect = 9e-70 Identities = 222/249 (89%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || ||||||||||||||||||||||||||||| || Sbjct: 406 agcgccctcgcacaag-aactcttactgctgttcatgatggtatcttggaggatgtagtc 464 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 465 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 524 Query: 127 aagatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctct 186 ||||| | |||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 525 aagattttcttggacccaaaggagcgcaacaataccgaatacaagctcgagaccttctcc 584 Query: 187 gcagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaacc 246 || ||||||||||||||||| |||||||| |||| ||||||||||||| || | ||||| Sbjct: 585 gcggtctaccgcaggctttgtgggaaagatgttgcctttgagtaccctatgactgaaact 644 Query: 247 gcatgaaga 255 || |||||| Sbjct: 645 gcttgaaga 653 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 403 tgaacaatgttaaagttttgagcatttaaattat 436 |||||||||||||||||||| ||||||||||||| Sbjct: 752 tgaacaatgttaaagttttgggcatttaaattat 785
>gb|BT016582.1| Zea mays clone Contig415 mRNA sequence Length = 907 Score = 258 bits (130), Expect = 1e-65 Identities = 211/237 (89%), Gaps = 1/237 (0%) Strand = Plus / Plus Query: 8 gcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtgt 67 ||||||||||||||| | | ||||| |||||||| ||||| ||||||||||||||||| | Sbjct: 441 gcgccctcgcaccagga-ctctgactgctgttcacgatggcatcttggaggatgttgtct 499 Query: 68 acccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatca 127 ||||||||||||||||||||||||| ||||| |||||| |||||||| ||||| | |||| Sbjct: 500 acccagctgagattgtggggaagcgtgtcagataccgtctggatggttccaagattatca 559 Query: 128 agatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctg 187 |||| | |||||||||||||||| | |||||||||||||||||||||||||||| | ||| Sbjct: 560 agattttcttggacccaaaggagaggaacaacactgaatacaagctggagacctgcactg 619 Query: 188 cagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaa 244 | |||||||||||||| || |||||||| || ||||||||||||||| || |||||| Sbjct: 620 cggtctaccgcaggctgtgtgggaaagatgtggtctttgagtaccctatgaccgaaa 676 Score = 58.0 bits (29), Expect = 3e-05 Identities = 42/45 (93%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 391 tggcaatgaacgtgaacaatgttaaagttttgagcatttaaatta 435 ||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 809 tggcagtggacgtgaacaatgttaa-gttttgagcatttaaatta 852
>gb|AY103554.1| Zea mays PCO154340 mRNA sequence Length = 1075 Score = 258 bits (130), Expect = 1e-65 Identities = 211/237 (89%), Gaps = 1/237 (0%) Strand = Plus / Plus Query: 8 gcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtgt 67 ||||||||||||||| | | ||||| |||||||| ||||| ||||||||||||||||| | Sbjct: 480 gcgccctcgcaccagga-ctctgactgctgttcacgatggcatcttggaggatgttgtct 538 Query: 68 acccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatca 127 ||||||||||||||||||||||||| ||||| |||||| |||||||| ||||| | |||| Sbjct: 539 acccagctgagattgtggggaagcgtgtcagataccgtctggatggttccaagattatca 598 Query: 128 agatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctg 187 |||| | |||||||||||||||| | |||||||||||||||||||||||||||| | ||| Sbjct: 599 agattttcttggacccaaaggagaggaacaacactgaatacaagctggagacctgcactg 658 Query: 188 cagtctaccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaa 244 | |||||||||||||| || |||||||| || ||||||||||||||| || |||||| Sbjct: 659 cggtctaccgcaggctgtgtgggaaagatgtggtctttgagtaccctatgaccgaaa 715 Score = 58.0 bits (29), Expect = 3e-05 Identities = 42/45 (93%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 391 tggcaatgaacgtgaacaatgttaaagttttgagcatttaaatta 435 ||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 849 tggcagtggacgtgaacaatgttaa-gttttgagcatttaaatta 892
>dbj|AK061276.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E11, full insert sequence Length = 811 Score = 234 bits (118), Expect = 2e-58 Identities = 190/214 (88%) Strand = Plus / Plus Query: 42 tgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgcgtcaggta 101 |||| |||||||||| ||||| || ||||||||||||||||| || |||||| |||| || Sbjct: 363 tgattgtatcttggaagatgtagtctacccagctgagattgttggcaagcgcatcagata 422 Query: 102 ccgtttggatggtgccaaggtcatcaagatctacttggacccaaaggagcgcaacaacac 161 |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| || Sbjct: 423 ccgtctggatggtgccaaggtcatcaagattttcttggacccaaaggagcgcaacaatac 482 Query: 162 tgaatacaagctggagaccttctctgcagtctaccgcaggctttgcgggaaagacgttgt 221 ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct: 483 cgaatacaagcttgagaccttctccgcagtctaccgcaggctttgtgggaaagatgttgc 542 Query: 222 ctttgagtaccctgtggccgaaaccgcatgaaga 255 ||| ||||||||| || | ||||| || |||||| Sbjct: 543 cttcgagtaccctatgactgaaactgcttgaaga 576 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 407 caatgttaaagttttgagcatttaaattat 436 |||||||||||||||| ||||||||||||| Sbjct: 678 caatgttaaagttttgggcatttaaattat 707
>gb|AF118149.1|AF118149 Secale cereale ribosomal protein S7 mRNA, complete cds Length = 819 Score = 172 bits (87), Expect = 6e-40 Identities = 192/227 (84%) Strand = Plus / Plus Query: 29 tgacagctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtgggga 88 |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 391 tgactgctgttcatgatggccttttggaggatgttgtgtacccagctgagattgtgggga 450 Query: 89 agcgcgtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggacccaaagg 148 | || ||||| || ||| | ||||| | ||| |||| ||||||| ||||||||||| || Sbjct: 451 aacgtgtcagatatcgtctagatggctcgaagatcattaagatcttcttggacccaatgg 510 Query: 149 agcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggctttgcg 208 | ||||||||||| || |||||| |||| |||||| ||||||| |||||||||||||| | Sbjct: 511 aacgcaacaacacagagtacaagttggataccttcactgcagtgtaccgcaggctttgtg 570 Query: 209 ggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaaga 255 | ||||| || || | |||||| || || |||||||| || |||||| Sbjct: 571 gcaaagatgtggtgtatgagtatccggttgccgaaactgcttgaaga 617
>gb|BT017481.1| Zea mays clone EL01N0409H01.c mRNA sequence Length = 840 Score = 170 bits (86), Expect = 3e-39 Identities = 176/206 (85%) Strand = Plus / Plus Query: 29 tgacagctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtgggga 88 |||| |||||||| ||||| || |||||||||||||| |||||| ||||||||| ||||| Sbjct: 424 tgactgctgttcacgatggcattttggaggatgttgtctacccaactgagattgagggga 483 Query: 89 agcgcgtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggacccaaagg 148 ||| |||| |||||| ||||||| ||||| | |||||||| | |||||||||||||| Sbjct: 484 agcatgtcacataccgtgtggatgggtccaagattatcaagattttcttggacccaaagg 543 Query: 149 agcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggctttgcg 208 || | |||||| ||||||||||||||||| ||| | ||| |||||||||||||| || | Sbjct: 544 agaggaacaactctgaatacaagctggagccctgcattgcggtctaccgcaggctgtgtg 603 Query: 209 ggaaagacgttgtctttgagtaccct 234 ||||||| || ||||||||||||||| Sbjct: 604 ggaaagatgtggtctttgagtaccct 629 Score = 50.1 bits (25), Expect = 0.006 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 391 tggcaatgaacgtgaacaatgttaaagttttgagcatttaaatta 435 ||||| || |||||||||||||||| |||||||||| |||||||| Sbjct: 772 tggcagtggacgtgaacaatgttaa-gttttgagcaattaaatta 815
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 141 bits (71), Expect = 2e-30 Identities = 111/123 (90%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || ||||||||||||||||||||||||||||| || Sbjct: 10367007 agcgccctcgcacaag-aactcttactgctgttcatgatggtatcttggaggatgtagtc 10367065 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 10367066 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 10367125 Query: 127 aag 129 ||| Sbjct: 10367126 aag 10367128 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 10371638 cttggacccaaaggagcgcaacaataccgaatacaagcttgagaccttctccgcagtcta 10371697 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||| ||||||||| || | ||||| || ||||| Sbjct: 10371698 ccgcaggctttgtgggaaagatgttgccttcgagtaccctatgactgaaactgcttgaag 10371757 Query: 255 a 255 | Sbjct: 10371758 a 10371758 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct: 10367382 cttggacccaaaggagcgcaacaataccgaatacaagctcgagaccttctccgcggtcta 10367441 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||||||||||||| || | ||||| || ||||| Sbjct: 10367442 ccgcaggctttgtgggaaagatgttgcctttgagtaccctatgactgaaactgcttgaag 10367501 Query: 255 a 255 | Sbjct: 10367502 a 10367502 Score = 133 bits (67), Expect = 6e-28 Identities = 110/123 (89%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || |||||||||||| |||||||||||||||| || Sbjct: 10371262 agcgccctcgcacaag-aactcttaccgctgttcatgattgtatcttggaggatgtagtc 10371320 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 10371321 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 10371380 Query: 127 aag 129 ||| Sbjct: 10371381 aag 10371383 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 403 tgaacaatgttaaagttttgagcatttaaattat 436 |||||||||||||||||||| ||||||||||||| Sbjct: 10367601 tgaacaatgttaaagttttgggcatttaaattat 10367634 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 407 caatgttaaagttttgagcatttaaattat 436 |||||||||||||||| ||||||||||||| Sbjct: 10371860 caatgttaaagttttgggcatttaaattat 10371889
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 141 bits (71), Expect = 2e-30 Identities = 111/123 (90%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || ||||||||||||||||||||||||||||| || Sbjct: 23560 agcgccctcgcacaag-aactcttactgctgttcatgatggtatcttggaggatgtagtc 23618 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 23619 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 23678 Query: 127 aag 129 ||| Sbjct: 23679 aag 23681 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 28191 cttggacccaaaggagcgcaacaataccgaatacaagcttgagaccttctccgcagtcta 28250 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||| ||||||||| || | ||||| || ||||| Sbjct: 28251 ccgcaggctttgtgggaaagatgttgccttcgagtaccctatgactgaaactgcttgaag 28310 Query: 255 a 255 | Sbjct: 28311 a 28311 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct: 23935 cttggacccaaaggagcgcaacaataccgaatacaagctcgagaccttctccgcggtcta 23994 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||||||||||||| || | ||||| || ||||| Sbjct: 23995 ccgcaggctttgtgggaaagatgttgcctttgagtaccctatgactgaaactgcttgaag 24054 Query: 255 a 255 | Sbjct: 24055 a 24055 Score = 133 bits (67), Expect = 6e-28 Identities = 110/123 (89%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || |||||||||||| |||||||||||||||| || Sbjct: 27815 agcgccctcgcacaag-aactcttaccgctgttcatgattgtatcttggaggatgtagtc 27873 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 27874 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 27933 Query: 127 aag 129 ||| Sbjct: 27934 aag 27936 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 403 tgaacaatgttaaagttttgagcatttaaattat 436 |||||||||||||||||||| ||||||||||||| Sbjct: 24154 tgaacaatgttaaagttttgggcatttaaattat 24187 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 407 caatgttaaagttttgagcatttaaattat 436 |||||||||||||||| ||||||||||||| Sbjct: 28413 caatgttaaagttttgggcatttaaattat 28442
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 141 bits (71), Expect = 2e-30 Identities = 111/123 (90%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || ||||||||||||||||||||||||||||| || Sbjct: 80473 agcgccctcgcacaag-aactcttactgctgttcatgatggtatcttggaggatgtagtc 80531 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 80532 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 80591 Query: 127 aag 129 ||| Sbjct: 80592 aag 80594 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 85104 cttggacccaaaggagcgcaacaataccgaatacaagcttgagaccttctccgcagtcta 85163 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||| ||||||||| || | ||||| || ||||| Sbjct: 85164 ccgcaggctttgtgggaaagatgttgccttcgagtaccctatgactgaaactgcttgaag 85223 Query: 255 a 255 | Sbjct: 85224 a 85224 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct: 80848 cttggacccaaaggagcgcaacaataccgaatacaagctcgagaccttctccgcggtcta 80907 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||||||||||||| || | ||||| || ||||| Sbjct: 80908 ccgcaggctttgtgggaaagatgttgcctttgagtaccctatgactgaaactgcttgaag 80967 Query: 255 a 255 | Sbjct: 80968 a 80968 Score = 133 bits (67), Expect = 6e-28 Identities = 110/123 (89%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || |||||||||||| |||||||||||||||| || Sbjct: 84728 agcgccctcgcacaag-aactcttaccgctgttcatgattgtatcttggaggatgtagtc 84786 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 84787 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 84846 Query: 127 aag 129 ||| Sbjct: 84847 aag 84849 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 403 tgaacaatgttaaagttttgagcatttaaattat 436 |||||||||||||||||||| ||||||||||||| Sbjct: 81067 tgaacaatgttaaagttttgggcatttaaattat 81100 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 407 caatgttaaagttttgagcatttaaattat 436 |||||||||||||||| ||||||||||||| Sbjct: 85326 caatgttaaagttttgggcatttaaattat 85355
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 141 bits (71), Expect = 2e-30 Identities = 111/123 (90%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || ||||||||||||||||||||||||||||| || Sbjct: 10365108 agcgccctcgcacaag-aactcttactgctgttcatgatggtatcttggaggatgtagtc 10365166 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 10365167 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 10365226 Query: 127 aag 129 ||| Sbjct: 10365227 aag 10365229 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 10369739 cttggacccaaaggagcgcaacaataccgaatacaagcttgagaccttctccgcagtcta 10369798 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||| ||||||||| || | ||||| || ||||| Sbjct: 10369799 ccgcaggctttgtgggaaagatgttgccttcgagtaccctatgactgaaactgcttgaag 10369858 Query: 255 a 255 | Sbjct: 10369859 a 10369859 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtcta 194 |||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct: 10365483 cttggacccaaaggagcgcaacaataccgaatacaagctcgagaccttctccgcggtcta 10365542 Query: 195 ccgcaggctttgcgggaaagacgttgtctttgagtaccctgtggccgaaaccgcatgaag 254 |||||||||||| |||||||| |||| ||||||||||||| || | ||||| || ||||| Sbjct: 10365543 ccgcaggctttgtgggaaagatgttgcctttgagtaccctatgactgaaactgcttgaag 10365602 Query: 255 a 255 | Sbjct: 10365603 a 10365603 Score = 133 bits (67), Expect = 6e-28 Identities = 110/123 (89%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 7 agcgccctcgcaccagnaaccctgacagctgttcatgatggtatcttggaggatgttgtg 66 ||||||||||||| || ||| || || |||||||||||| |||||||||||||||| || Sbjct: 10369363 agcgccctcgcacaag-aactcttaccgctgttcatgattgtatcttggaggatgtagtc 10369421 Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||||||||||||||| || |||||| |||| |||||| |||||||||||||||||||| Sbjct: 10369422 tacccagctgagattgttggcaagcgcatcagataccgtctggatggtgccaaggtcatc 10369481 Query: 127 aag 129 ||| Sbjct: 10369482 aag 10369484 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 403 tgaacaatgttaaagttttgagcatttaaattat 436 |||||||||||||||||||| ||||||||||||| Sbjct: 10365702 tgaacaatgttaaagttttgggcatttaaattat 10365735 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 407 caatgttaaagttttgagcatttaaattat 436 |||||||||||||||| ||||||||||||| Sbjct: 10369961 caatgttaaagttttgggcatttaaattat 10369990
>gb|AF529175.1| Oryza sativa (japonica cultivar-group) ribosomal protein S7 (RPS7) mRNA, complete cds Length = 919 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 463 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 522 Query: 94 gtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggacccaaaggagcgc 153 ||||| |||| ||||||||| || |||| ||||||| | ||||||||||||||||| Sbjct: 523 gtcagataccacttggatggtagaaaaatcatgaagatcttcctggacccaaaggagcgc 582 Query: 154 aacaacactgaatacaagct 173 |||||||| || |||||||| Sbjct: 583 aacaacaccgagtacaagct 602
>dbj|AK104191.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C09, full insert sequence Length = 910 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 474 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 533 Query: 94 gtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggacccaaaggagcgc 153 ||||| |||| ||||||||| || |||| ||||||| | ||||||||||||||||| Sbjct: 534 gtcagataccacttggatggtagaaaaatcatgaagatcttcctggacccaaaggagcgc 593 Query: 154 aacaacactgaatacaagct 173 |||||||| || |||||||| Sbjct: 594 aacaacaccgagtacaagct 613
>dbj|AK061627.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B02, full insert sequence Length = 910 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 474 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 533 Query: 94 gtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggacccaaaggagcgc 153 ||||| |||| ||||||||| || |||| ||||||| | ||||||||||||||||| Sbjct: 534 gtcagataccacttggatggtagaaaaatcatgaagatcttcctggacccaaaggagcgc 593 Query: 154 aacaacactgaatacaagct 173 |||||||| || |||||||| Sbjct: 594 aacaacaccgagtacaagct 613
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 129 bits (65), Expect = 9e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 129 gatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgc 188 ||||| |||||| ||||||||||||||||| | |||||||||||||||||||||| ||| Sbjct: 13024344 gatcttcttggatccaaaggagcgcaacaatatcgaatacaagctggagaccttctttgc 13024285 Query: 189 agtctaccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||||||||| |||||||| |||||||| |||| |||||||||||| Sbjct: 13024284 agtctaccgtaggctttgtgggaaagatgttgcctttgagtaccc 13024240 Score = 63.9 bits (32), Expect = 4e-07 Identities = 51/56 (91%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 35 ctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaag 90 ||||||||||||| |||||||||||||| || | ||||||||||||||| |||||| Sbjct: 13024712 ctgttcatgatggaatcttggaggatgtagtct-cccagctgagattgttgggaag 13024658 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 aacaatgttaaagttttgagcatttaaattat 436 |||||| ||||||||||| |||||| |||||| Sbjct: 13024137 aacaatattaaagttttgggcatttgaattat 13024106
>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0688H12 Length = 139279 Score = 129 bits (65), Expect = 9e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 129 gatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgc 188 ||||| |||||| ||||||||||||||||| | |||||||||||||||||||||| ||| Sbjct: 133987 gatcttcttggatccaaaggagcgcaacaatatcgaatacaagctggagaccttctttgc 133928 Query: 189 agtctaccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||||||||| |||||||| |||||||| |||| |||||||||||| Sbjct: 133927 agtctaccgtaggctttgtgggaaagatgttgcctttgagtaccc 133883 Score = 63.9 bits (32), Expect = 4e-07 Identities = 51/56 (91%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 35 ctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaag 90 ||||||||||||| |||||||||||||| || | ||||||||||||||| |||||| Sbjct: 134355 ctgttcatgatggaatcttggaggatgtagtct-cccagctgagattgttgggaag 134301 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 aacaatgttaaagttttgagcatttaaattat 436 |||||| ||||||||||| |||||| |||||| Sbjct: 133780 aacaatattaaagttttgggcatttgaattat 133749
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 129 bits (65), Expect = 9e-27 Identities = 95/105 (90%) Strand = Plus / Minus Query: 129 gatctacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgc 188 ||||| |||||| ||||||||||||||||| | |||||||||||||||||||||| ||| Sbjct: 921 gatcttcttggatccaaaggagcgcaacaatatcgaatacaagctggagaccttctttgc 862 Query: 189 agtctaccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||||||||| |||||||| |||||||| |||| |||||||||||| Sbjct: 861 agtctaccgtaggctttgtgggaaagatgttgcctttgagtaccc 817 Score = 63.9 bits (32), Expect = 4e-07 Identities = 51/56 (91%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 35 ctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaag 90 ||||||||||||| |||||||||||||| || | ||||||||||||||| |||||| Sbjct: 1289 ctgttcatgatggaatcttggaggatgtagtct-cccagctgagattgttgggaag 1235 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 aacaatgttaaagttttgagcatttaaattat 436 |||||| ||||||||||| |||||| |||||| Sbjct: 714 aacaatattaaagttttgggcatttgaattat 683
>dbj|AK103081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118F01, full insert sequence Length = 903 Score = 127 bits (64), Expect = 3e-26 Identities = 121/140 (86%) Strand = Plus / Plus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 474 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 533 Query: 94 gtcaggtaccgtttggatggtgccaaggtcatcaagatctacttggacccaaaggagcgc 153 ||||| |||| |||| |||| || |||| ||||||| | ||||||||||||||||| Sbjct: 534 gtcagataccacttgggtggtagaaaaatcatgaagatcttcctggacccaaaggagcgc 593 Query: 154 aacaacactgaatacaagct 173 |||||||| || |||||||| Sbjct: 594 aacaacaccgagtacaagct 613
>ref|XM_465276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 339 Score = 107 bits (54), Expect = 3e-20 Identities = 78/86 (90%) Strand = Plus / Plus Query: 148 gagcgcaacaacactgaatacaagctggagaccttctctgcagtctaccgcaggctttgc 207 ||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 235 gagcgcaacaatatcgaatacaagctggagaccttctttgcagtctaccgtaggctttgt 294 Query: 208 gggaaagacgttgtctttgagtaccc 233 |||||||| |||| |||||||||||| Sbjct: 295 gggaaagatgttgcctttgagtaccc 320 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 35 ctgttcatgatggtatcttggaggatg 61 ||||||||||||| ||||||||||||| Sbjct: 209 ctgttcatgatggaatcttggaggatg 235
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01, complete sequence Length = 151938 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 15688 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 15629 Query: 94 gtcaggtaccgtttggatggt 114 ||||| |||| ||||||||| Sbjct: 15628 gtcagataccacttggatggt 15608 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 128 agatctacttggacccaaaggagcgcaacaacactgaatacaagct 173 |||||| | ||||||||||||||||||||||||| || |||||||| Sbjct: 15038 agatcttcctggacccaaaggagcgcaacaacaccgagtacaagct 14993
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 119501 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 119442 Query: 94 gtcaggtaccgtttggatggt 114 ||||| |||| ||||||||| Sbjct: 119441 gtcagataccacttggatggt 119421 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 128 agatctacttggacccaaaggagcgcaacaacactgaatacaagct 173 |||||| | ||||||||||||||||||||||||| || |||||||| Sbjct: 118851 agatcttcctggacccaaaggagcgcaacaacaccgagtacaagct 118806
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 34 gctgttcatgatggtatcttggaggatgttgtgtacccagctgagattgtggggaagcgc 93 |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 16168331 gctgttcatgatggcatcttggaggatgttgtgtatccagcagagattgttgggaagcgt 16168272 Query: 94 gtcaggtaccgtttggatggt 114 ||||| |||| ||||||||| Sbjct: 16168271 gtcagataccacttggatggt 16168251 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 128 agatctacttggacccaaaggagcgcaacaacactgaatacaagct 173 |||||| | ||||||||||||||||||||||||| || |||||||| Sbjct: 16167681 agatcttcctggacccaaaggagcgcaacaacaccgagtacaagct 16167636
>dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT16G15, TM0073, complete sequence Length = 90077 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 135 cttggacccaaaggagcgcaacaacactgaatacaagctggagac 179 ||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 14943 cttggacccaaaggaacgaaacaacactgagtacaagctggagac 14987
>gb|DQ228355.1| Solanum tuberosum clone 153A08 ribosomal protein S7-like protein mRNA, complete cds Length = 881 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 133 tacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtc 192 ||||||||||| ||||| || |||||||| || || ||| |||||||||| || ||||| Sbjct: 553 tacttggaccccaaggaacgaaacaacacagagtataagttggagaccttttcagcagtt 612 Query: 193 taccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||| | | ||||| || ||||| ||||| ||||||||||| Sbjct: 613 tacagaaagctttcaggcaaagatgttgtgtttgagtaccc 653
>gb|DQ200382.1| Solanum tuberosum clone 063A09 unknown mRNA Length = 817 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 133 tacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtc 192 ||||||||||| ||||| || |||||||| || || ||| |||||||||| || ||||| Sbjct: 540 tacttggaccccaaggaacgaaacaacacagagtataagttggagaccttttcagcagtt 599 Query: 193 taccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||| | | ||||| || ||||| ||||| ||||||||||| Sbjct: 600 tacagaaagctttcaggcaaagatgttgtgtttgagtaccc 640
>gb|DQ191636.1| Solanum tuberosum 40S ribosomal protein S7-like protein mRNA, complete cds Length = 893 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 133 tacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtc 192 ||||||||||| ||||| || |||||||| || || ||| |||||||||| || ||||| Sbjct: 536 tacttggaccccaaggaacgaaacaacacagagtataagttggagaccttttcagcagtt 595 Query: 193 taccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||| | | ||||| || ||||| ||||| ||||||||||| Sbjct: 596 tacagaaagctttcaggcaaagatgttgtgtttgagtaccc 636
>gb|DQ241830.1| Solanum tuberosum clone 174B09 40S ribosomal protein S7-like protein-like mRNA, complete cds Length = 894 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 133 tacttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgcagtc 192 ||||||||||| ||||| || |||||||| || || ||| |||||||||| || ||||| Sbjct: 543 tacttggaccccaaggaacgaaacaacacagagtataagttggagaccttttcagcagtt 602 Query: 193 taccgcaggctttgcgggaaagacgttgtctttgagtaccc 233 ||| | | ||||| || ||||| ||||| ||||||||||| Sbjct: 603 tacagaaagctttcaggcaaagatgttgtgtttgagtaccc 643
>gb|DQ377970.1| Populus x canadensis putative 40S ribosomal protein S7 mRNA, partial cds Length = 546 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 126 caagatctacttggacccaaaggagcgcaacaacactga 164 |||||||| |||||| || |||||||||||||||||||| Sbjct: 506 caagatcttcttggatcccaaggagcgcaacaacactga 544
>gb|AF144752.1|AF144752 Brassica oleracea 40S ribosomal protein S7 homolog mRNA, complete cds Length = 798 Score = 50.1 bits (25), Expect = 0.006 Identities = 91/113 (80%) Strand = Plus / Plus Query: 67 tacccagctgagattgtggggaagcgcgtcaggtaccgtttggatggtgccaaggtcatc 126 ||||| ||||||||||| || ||||| ||| |||||| | ||||| ||||| |||| Sbjct: 475 taccctgctgagattgttggaaagcgtaccagataccgtgttgatggcaccaagatcatg 534 Query: 127 aagatctacttggacccaaaggagcgcaacaacactgaatacaagctggagac 179 ||| | || ||||| || |||||| | ||||||||||| |||||||| ||||| Sbjct: 535 aaggtgtatttggagcctaaggagaggaacaacactgagtacaagcttgagac 587
>emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17 on chromosome 3, complete sequence Length = 122868 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 136 ttggacccaaaggagcgcaacaacactgaatacaagctggagaccttctctgc 188 ||||||||||||||| | ||||| || |||||||| ||||||| || ||||| Sbjct: 46296 ttggacccaaaggagagaaacaataccgaatacaaattggagacgttttctgc 46348
>ref|XM_651851.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (6.t00008) partial mRNA Length = 8574 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 306 ttgatgcttcagttagttgtgctat 330 |||||||||||||||||||| |||| Sbjct: 3704 ttgatgcttcagttagttgtcctat 3728
>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence Length = 180573 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 418 ttttgagcatttaaattatga 438 ||||||||||||||||||||| Sbjct: 109473 ttttgagcatttaaattatga 109493
>dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-513M1, complete sequences Length = 125561 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 ttttgagcatttaaattatga 438 ||||||||||||||||||||| Sbjct: 85472 ttttgagcatttaaattatga 85452
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cagctgagattgtggggaag 90 |||||||||||||||||||| Sbjct: 313622 cagctgagattgtggggaag 313603
>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence Length = 146078 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 55 gaggatgttgtgtacccagctgagattgtggggaagcgcgtcag 98 ||||||||||||| || || |||||||| ||||||||| |||| Sbjct: 143183 gaggatgttgtgtttcctgccgagattgtcgggaagcgcatcag 143226
>ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06084) partial mRNA Length = 1296 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 ttttgagcatttaaattatg 437 |||||||||||||||||||| Sbjct: 741 ttttgagcatttaaattatg 760
>emb|AL391812.7| Human DNA sequence from clone RP13-94I22 on chromosome 10 Contains part of the MYO3A gene for myosin IIIA, complete sequence Length = 61212 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ttgatggagatggcaatgaa 400 |||||||||||||||||||| Sbjct: 34314 ttgatggagatggcaatgaa 34333
>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome Length = 300923 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 taaagttttgagcatttaaattat 436 |||||||||| ||||||||||||| Sbjct: 287360 taaagttttgtgcatttaaattat 287383
>gb|AC040917.6| Homo sapiens chromosome 8, clone RP11-1M21, complete sequence Length = 158031 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 caatgtattccagaaacatagttt 354 ||||||||||||| |||||||||| Sbjct: 73181 caatgtattccagcaacatagttt 73158
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 413 taaagttttgagcatttaaattat 436 |||||||||| ||||||||||||| Sbjct: 551337 taaagttttgtgcatttaaattat 551314
>gb|AC069506.14| Homo sapiens 3 BAC RP11-321G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131274 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 gagcatttaaattatgaacg 441 |||||||||||||||||||| Sbjct: 90603 gagcatttaaattatgaacg 90584
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 taaagttttgagcatttaaattat 436 |||||||||| ||||||||||||| Sbjct: 289946 taaagttttgtgcatttaaattat 289969
>gb|AC079384.26| Homo sapiens 12 BAC RP11-148B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180555 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cgcaacaacactgaatacaagctg 174 |||| ||||||||||||||||||| Sbjct: 85185 cgcagcaacactgaatacaagctg 85208
>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence Length = 115421 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ctgttcatgatggtatcttg 54 |||||||||||||||||||| Sbjct: 41652 ctgttcatgatggtatcttg 41671
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 taaagttttgagcatttaaattat 436 |||||||||| ||||||||||||| Sbjct: 289568 taaagttttgtgcatttaaattat 289591
>gb|AF056316.1|AF056316 Avicennia marina 40S ribosome protein S7 mRNA, complete cds Length = 833 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gggaaagacgttgtctttga 227 |||||||||||||||||||| Sbjct: 600 gggaaagacgttgtctttga 619
>gb|AF098519.1|AF098519 Avicennia marina unknown mRNA Length = 833 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gggaaagacgttgtctttga 227 |||||||||||||||||||| Sbjct: 600 gggaaagacgttgtctttga 619
>gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.13, complete sequence Length = 112288 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 caatgtattccagaaacatagttt 354 ||||||||||||| |||||||||| Sbjct: 86890 caatgtattccagcaacatagttt 86867
>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete sequence Length = 141401 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tgaacgtgaacaatgttaaa 416 |||||||||||||||||||| Sbjct: 44744 tgaacgtgaacaatgttaaa 44763 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,889,768 Number of Sequences: 3902068 Number of extensions: 3889768 Number of successful extensions: 73724 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73474 Number of HSP's gapped (non-prelim): 230 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
