>ref|NM_190977.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 480

 Score =  200 bits (101), Expect = 4e-48
 Identities = 242/289 (83%)
 Strand = Plus / Plus

                                                                       
Query: 122 gcggtctcggcgtcgctcgccttcacctctgcctcctcgttcggcggttcatctttggga 181
           |||||||||||||||||  ||||||||||||||||||| || |  |||||||||||||||
Sbjct: 175 gcggtctcggcgtcgctgaccttcacctctgcctcctcatttgctggttcatctttggga 234

                                                                       
Query: 182 attgagttcagttacaacagattaacaacacgaagacctcgtggtctacagattagggcc 241
           ||||| ||||| ||||||||| | |||||| ||||| | ||   ||| ||||||||||| 
Sbjct: 235 attgaattcagctacaacagagttacaacaggaagatcccggattctgcagattagggct 294

                                                                       
Query: 242 ggaaaggctgccctctgcctgactaagaggtcaagatctaggaagtcacttgcccgtgtg 301
           ||||||||||| || ||| |||| |||||    |||||||||||||| |||||||||   
Sbjct: 295 ggaaaggctgctctgtgcatgaccaagagaaatagatctaggaagtcgcttgcccgtaca 354

                                                                       
Query: 302 catggtttccgaaggcggatgcggactactgctggaagaagggttctgaagcgtagacgt 361
           |||||||| || || |||||| |||||||||| ||||||| ||| |||||||| ||||| 
Sbjct: 355 catggttttcgcagacggatgaggactactgccggaagaaaggtcctgaagcgcagacgc 414

                                                            
Query: 362 gacaaaggaaggaagatcctctgcacaaagtcaaactcacccactggga 410
           | ||||||||| | | | |||||||||||| | ||||| ||||||||||
Sbjct: 415 gccaaaggaagaagggttctctgcacaaagacgaactcccccactggga 463

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  159 bits (80), Expect = 1e-35
 Identities = 203/244 (83%)
 Strand = Plus / Minus

                                                                            
Query: 167      ggttcatctttgggaattgagttcagttacaacagattaacaacacgaagacctcgtggt 226
                |||||||||||||||||||| ||||| ||||||||| | |||||| ||||| | ||   |
Sbjct: 34127511 ggttcatctttgggaattgaattcagctacaacagagttacaacaggaagatcccggatt 34127452

                                                                            
Query: 227      ctacagattagggccggaaaggctgccctctgcctgactaagaggtcaagatctaggaag 286
                || ||||||||||| ||||||||||| || ||| |||| |||||    ||||||||||||
Sbjct: 34127451 ctgcagattagggctggaaaggctgctctgtgcatgaccaagagaaatagatctaggaag 34127392

                                                                            
Query: 287      tcacttgcccgtgtgcatggtttccgaaggcggatgcggactactgctggaagaagggtt 346
                || |||||||||   |||||||| || || |||||| |||||||||| ||||||| ||| 
Sbjct: 34127391 tcgcttgcccgtacacatggttttcgcagacggatgaggactactgccggaagaaaggtc 34127332

                                                                            
Query: 347      ctgaagcgtagacgtgacaaaggaaggaagatcctctgcacaaagtcaaactcacccact 406
                |||||||| ||||| | ||||||||| | | | |||||||||||| | ||||| ||||||
Sbjct: 34127331 ctgaagcgcagacgcgccaaaggaagaagggttctctgcacaaagacgaactcccccact 34127272

                    
Query: 407      ggga 410
                ||||
Sbjct: 34127271 ggga 34127268



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 122      gcggtctcggcgtcgctcgccttcacctctgcctcctc 159
                |||||||||||||||||  |||||||||||||||||||
Sbjct: 34128670 gcggtctcggcgtcgctgaccttcacctctgcctcctc 34128633

>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score =  159 bits (80), Expect = 1e-35
 Identities = 203/244 (83%)
 Strand = Plus / Minus

                                                                          
Query: 167    ggttcatctttgggaattgagttcagttacaacagattaacaacacgaagacctcgtggt 226
              |||||||||||||||||||| ||||| ||||||||| | |||||| ||||| | ||   |
Sbjct: 123989 ggttcatctttgggaattgaattcagctacaacagagttacaacaggaagatcccggatt 123930

                                                                          
Query: 227    ctacagattagggccggaaaggctgccctctgcctgactaagaggtcaagatctaggaag 286
              || ||||||||||| ||||||||||| || ||| |||| |||||    ||||||||||||
Sbjct: 123929 ctgcagattagggctggaaaggctgctctgtgcatgaccaagagaaatagatctaggaag 123870

                                                                          
Query: 287    tcacttgcccgtgtgcatggtttccgaaggcggatgcggactactgctggaagaagggtt 346
              || |||||||||   |||||||| || || |||||| |||||||||| ||||||| ||| 
Sbjct: 123869 tcgcttgcccgtacacatggttttcgcagacggatgaggactactgccggaagaaaggtc 123810

                                                                          
Query: 347    ctgaagcgtagacgtgacaaaggaaggaagatcctctgcacaaagtcaaactcacccact 406
              |||||||| ||||| | ||||||||| | | | |||||||||||| | ||||| ||||||
Sbjct: 123809 ctgaagcgcagacgcgccaaaggaagaagggttctctgcacaaagacgaactcccccact 123750

                  
Query: 407    ggga 410
              ||||
Sbjct: 123749 ggga 123746



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 122    gcggtctcggcgtcgctcgccttcacctctgcctcctc 159
              |||||||||||||||||  |||||||||||||||||||
Sbjct: 125148 gcggtctcggcgtcgctgaccttcacctctgcctcctc 125111

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 126    tctcggcgtcgctcgccttcacct 149
              ||||||||||||||||||||||||
Sbjct: 544619 tctcggcgtcgctcgccttcacct 544642

>gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complete sequence
          Length = 140226

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 32    cccatgggggcctccgcctccccg 55
             ||||||||||||||||||||||||
Sbjct: 99948 cccatgggggcctccgcctccccg 99971

>gb|U70855.2| Caenorhabditis elegans cosmid K08F11, complete sequence
          Length = 26520

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 138   tcgccttcacctctgcctcctc 159
             ||||||||||||||||||||||
Sbjct: 25081 tcgccttcacctctgcctcctc 25102

>gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, complete sequence
          Length = 180594

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 328   tactgctggaagaagggttctg 349
             ||||||||||||||||||||||
Sbjct: 77320 tactgctggaagaagggttctg 77341

>ref|NM_058707.3| Caenorhabditis elegans LiPid Depleted family member (lpd-6) (lpd-6)
            mRNA, complete cds
          Length = 1824

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 138  tcgccttcacctctgcctcctc 159
            ||||||||||||||||||||||
Sbjct: 1168 tcgccttcacctctgcctcctc 1147

>gb|AC024864.1|AC024864 Caenorhabditis elegans clone Y74C9A, complete sequence
          Length = 47629

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 138   tcgccttcacctctgcctcctc 159
             ||||||||||||||||||||||
Sbjct: 23253 tcgccttcacctctgcctcctc 23274

>gb|AF043700.1| Caenorhabditis elegans cosmid K09H9, complete sequence
          Length = 37881

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 138   tcgccttcacctctgcctcctc 159
             ||||||||||||||||||||||
Sbjct: 23228 tcgccttcacctctgcctcctc 23249

>gb|AC024206.1| Caenorhabditis elegans cosmid Y74C9A, complete sequence
          Length = 47629

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 138   tcgccttcacctctgcctcctc 159
             ||||||||||||||||||||||
Sbjct: 23253 tcgccttcacctctgcctcctc 23274

>gb|AC151721.2| Mus musculus BAC clone RP23-68E12 from 5, complete sequence
          Length = 218524

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 328    tactgctggaagaagggttctg 349
              ||||||||||||||||||||||
Sbjct: 186874 tactgctggaagaagggttctg 186895

>gb|AC098829.3| Homo sapiens BAC clone RP11-665G4 from 4, complete sequence
          Length = 176778

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   taagaggtcaagatctaggaa 285
             |||||||||||||||||||||
Sbjct: 61138 taagaggtcaagatctaggaa 61118

>gb|AF234964.1|AF234964 Pyroteuthis addolux actin gene, partial cds
          Length = 784

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 517 cacatcttttccctgttacctttgg 541
           |||||||||||||||||| ||||||
Sbjct: 93  cacatcttttccctgttagctttgg 69

>emb|AL163528.8|HS109K15 Homo sapiens chromosome 9 BAC RP11-109K15, complete sequence
          Length = 184517

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 447    tattccagctgtaagttttac 467
              |||||||||||||||||||||
Sbjct: 145136 tattccagctgtaagttttac 145116

>emb|AL442637.4|HS495L19 Homo sapiens chromosome 9 BAC RP11-495L19, complete sequence
          Length = 180915

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 447    tattccagctgtaagttttac 467
              |||||||||||||||||||||
Sbjct: 135110 tattccagctgtaagttttac 135130

>gb|AC087899.40| Mus musculus strain C57BL/6J chromosome 19 clone rp23-170m6, complete
             sequence
          Length = 194291

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   aaaggctgccctctgcctgac 264
             |||||||||||||||||||||
Sbjct: 80401 aaaggctgccctctgcctgac 80421

>gb|AC169037.4| Mus musculus BAC clone RP23-85E20 from chromosome 16, complete sequence
          Length = 184591

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 244    aaaggctgccctctgcctgac 264
              |||||||||||||||||||||
Sbjct: 118941 aaaggctgccctctgcctgac 118921

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 123     cggtctcggcgtcgctcgccttcacctc 150
               ||||||||||||||| ||||| ||||||
Sbjct: 1585058 cggtctcggcgtcgcgcgcctgcacctc 1585085

>gb|AC124353.5| Mus musculus BAC clone RP24-481I14 from chromosome 12, complete
             sequence
          Length = 152881

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   gccttcacctctgcctcctc 159
             ||||||||||||||||||||
Sbjct: 72565 gccttcacctctgcctcctc 72584

>emb|AL929439.6| Mouse DNA sequence from clone RP23-207J10 on chromosome 11, complete
            sequence
          Length = 7130

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  ttgggaattgagttcagtta 195
            ||||||||||||||||||||
Sbjct: 4838 ttgggaattgagttcagtta 4819

>emb|CR860965.1| Pongo pygmaeus mRNA; cDNA DKFZp469E1114 (from clone DKFZp469E1114)
          Length = 1500

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  gaaaggctgccctctgcctg 262
            ||||||||||||||||||||
Sbjct: 1070 gaaaggctgccctctgcctg 1051

>gb|AE012265.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 173
            of 460 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  cgtcgctcgccttcacctct 151
            ||||||||||||||||||||
Sbjct: 8458 cgtcgctcgccttcacctct 8439

>gb|AC027271.7| Homo sapiens BAC clone RP11-365H22 from 4, complete sequence
          Length = 177985

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    attgctgcacatcttttccc 529
              ||||||||||||||||||||
Sbjct: 129961 attgctgcacatcttttccc 129980

>gb|AF277846.2|AF277846 Pinus taeda clone 51k4f microsatellite PtTX3002 sequence
          Length = 386

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 gccttcacctctgcctcctc 159
           ||||||||||||||||||||
Sbjct: 328 gccttcacctctgcctcctc 309

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     cgtcgctcgccttcacctct 151
               ||||||||||||||||||||
Sbjct: 3123833 cgtcgctcgccttcacctct 3123852

>ref|NM_075536.1| Caenorhabditis elegans B0250.8 (B0250.8) mRNA, complete cds
          Length = 885

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 gccttcacctctgcctcctc 159
           ||||||||||||||||||||
Sbjct: 233 gccttcacctctgcctcctc 214

>ref|XM_395593.2| PREDICTED: Apis mellifera similar to CG3707-PA, isoform A
           (LOC412129), mRNA
          Length = 3492

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 459 aagttttactctttttgcac 478
           ||||||||||||||||||||
Sbjct: 243 aagttttactctttttgcac 224

>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    tattgattacagcgcaatgt 435
              ||||||||||||||||||||
Sbjct: 944035 tattgattacagcgcaatgt 944054

>gb|AC068491.4| Homo sapiens BAC clone RP11-803D5 from 2, complete sequence
          Length = 176551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    ggaaaggctgccctctgcct 261
              ||||||||||||||||||||
Sbjct: 172459 ggaaaggctgccctctgcct 172478

>gb|AC073896.41| Homo sapiens 12 BAC RP11-977G19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174487

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   gaaaggctgccctctgcctg 262
             ||||||||||||||||||||
Sbjct: 46714 gaaaggctgccctctgcctg 46733

>gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, complete sequence
          Length = 192494

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ggaaaggctgccctctgcct 261
             ||||||||||||||||||||
Sbjct: 32810 ggaaaggctgccctctgcct 32829

>gb|AC145419.3| Dasypus novemcinctus clone VMRC5-468K1, complete sequence
          Length = 151116

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   gccttcacctctgcctcctc 159
             ||||||||||||||||||||
Sbjct: 74837 gccttcacctctgcctcctc 74856

>emb|CR354403.16| Zebrafish DNA sequence from clone CH211-196E8 in linkage group 9,
             complete sequence
          Length = 167419

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   tgtattccagctgtaagttt 464
             ||||||||||||||||||||
Sbjct: 45120 tgtattccagctgtaagttt 45101

>emb|Z81453.1|CEB0250 Caenorhabditis elegans Cosmid B0250, complete sequence
          Length = 39216

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   gccttcacctctgcctcctc 159
             ||||||||||||||||||||
Sbjct: 15381 gccttcacctctgcctcctc 15400

>gb|AC172859.1| Brassica rapa subsp. pekinensis clone KBrB023K01, complete sequence
          Length = 102061

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  tctgcacaaagtcaaactca 400
            ||||||||||||||||||||
Sbjct: 7758 tctgcacaaagtcaaactca 7777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,571,773
Number of Sequences: 3902068
Number of extensions: 5571773
Number of successful extensions: 79814
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79663
Number of HSP's gapped (non-prelim): 142
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)