ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5c22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550395.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2715 Score = 167 bits (84), Expect = 5e-38 Identities = 237/288 (82%) Strand = Plus / Plus Query: 25 atgaacacgagtgcactgtcactatctaaggcgctagagagcactcattccaagaatgcc 84 ||||||| ||||||| | |||||||| |||| ||||||| ||| |||| | ||| | | Sbjct: 2013 atgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggac 2072 Query: 85 actcttgaggcagagaaagaaatgctatcaaaagctctcgatgaacaaacaaaactgaca 144 |||||||| ||||||||| ||||| ||||||| ||||| | ||| ||| || | ||| Sbjct: 2073 actcttgaagcagagaaaaaaatgttatcaaaggctcttgctgagcaacagaagatcaca 2132 Query: 145 accgaggctcaagagaactgcgaggatgctcagaatcttatcacgaggcttcagacagaa 204 || || ||||| || ||| ||||||||||||||||||||| | ||||||||||| || Sbjct: 2133 actgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgag 2192 Query: 205 agggagacttttgaaatgaggtctaggcacctcgaagaggaactggcgttagcgaagggt 264 | ||||| ||||||||||||| |||| || || |||||||| |||||||||| |||||| Sbjct: 2193 aaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggt 2252 Query: 265 gagatgttgcgtctaagaaggcagattagtgcaagcaaatcccagaaa 312 ||||| ||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 2253 gagatattgcgcctaagaaggcagattagtacaagcagatcacagaaa 2300
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 5e-38 Identities = 237/288 (82%) Strand = Plus / Minus Query: 25 atgaacacgagtgcactgtcactatctaaggcgctagagagcactcattccaagaatgcc 84 ||||||| ||||||| | |||||||| |||| ||||||| ||| |||| | ||| | | Sbjct: 4208258 atgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggac 4208199 Query: 85 actcttgaggcagagaaagaaatgctatcaaaagctctcgatgaacaaacaaaactgaca 144 |||||||| ||||||||| ||||| ||||||| ||||| | ||| ||| || | ||| Sbjct: 4208198 actcttgaagcagagaaaaaaatgttatcaaaggctcttgctgagcaacagaagatcaca 4208139 Query: 145 accgaggctcaagagaactgcgaggatgctcagaatcttatcacgaggcttcagacagaa 204 || || ||||| || ||| ||||||||||||||||||||| | ||||||||||| || Sbjct: 4208138 actgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgag 4208079 Query: 205 agggagacttttgaaatgaggtctaggcacctcgaagaggaactggcgttagcgaagggt 264 | ||||| ||||||||||||| |||| || || |||||||| |||||||||| |||||| Sbjct: 4208078 aaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggt 4208019 Query: 265 gagatgttgcgtctaagaaggcagattagtgcaagcaaatcccagaaa 312 ||||| ||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 4208018 gagatattgcgcctaagaaggcagattagtacaagcagatcacagaaa 4207971
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 167 bits (84), Expect = 5e-38 Identities = 237/288 (82%) Strand = Plus / Minus Query: 25 atgaacacgagtgcactgtcactatctaaggcgctagagagcactcattccaagaatgcc 84 ||||||| ||||||| | |||||||| |||| ||||||| ||| |||| | ||| | | Sbjct: 46225 atgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggac 46166 Query: 85 actcttgaggcagagaaagaaatgctatcaaaagctctcgatgaacaaacaaaactgaca 144 |||||||| ||||||||| ||||| ||||||| ||||| | ||| ||| || | ||| Sbjct: 46165 actcttgaagcagagaaaaaaatgttatcaaaggctcttgctgagcaacagaagatcaca 46106 Query: 145 accgaggctcaagagaactgcgaggatgctcagaatcttatcacgaggcttcagacagaa 204 || || ||||| || ||| ||||||||||||||||||||| | ||||||||||| || Sbjct: 46105 actgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgag 46046 Query: 205 agggagacttttgaaatgaggtctaggcacctcgaagaggaactggcgttagcgaagggt 264 | ||||| ||||||||||||| |||| || || |||||||| |||||||||| |||||| Sbjct: 46045 aaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggt 45986 Query: 265 gagatgttgcgtctaagaaggcagattagtgcaagcaaatcccagaaa 312 ||||| ||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 45985 gagatattgcgcctaagaaggcagattagtacaagcagatcacagaaa 45938
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 167 bits (84), Expect = 5e-38 Identities = 237/288 (82%) Strand = Plus / Minus Query: 25 atgaacacgagtgcactgtcactatctaaggcgctagagagcactcattccaagaatgcc 84 ||||||| ||||||| | |||||||| |||| ||||||| ||| |||| | ||| | | Sbjct: 155229 atgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggac 155170 Query: 85 actcttgaggcagagaaagaaatgctatcaaaagctctcgatgaacaaacaaaactgaca 144 |||||||| ||||||||| ||||| ||||||| ||||| | ||| ||| || | ||| Sbjct: 155169 actcttgaagcagagaaaaaaatgttatcaaaggctcttgctgagcaacagaagatcaca 155110 Query: 145 accgaggctcaagagaactgcgaggatgctcagaatcttatcacgaggcttcagacagaa 204 || || ||||| || ||| ||||||||||||||||||||| | ||||||||||| || Sbjct: 155109 actgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgag 155050 Query: 205 agggagacttttgaaatgaggtctaggcacctcgaagaggaactggcgttagcgaagggt 264 | ||||| ||||||||||||| |||| || || |||||||| |||||||||| |||||| Sbjct: 155049 aaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggt 154990 Query: 265 gagatgttgcgtctaagaaggcagattagtgcaagcaaatcccagaaa 312 ||||| ||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 154989 gagatattgcgcctaagaaggcagattagtacaagcagatcacagaaa 154942
>dbj|AK120377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071N06, full insert sequence Length = 2715 Score = 167 bits (84), Expect = 5e-38 Identities = 237/288 (82%) Strand = Plus / Plus Query: 25 atgaacacgagtgcactgtcactatctaaggcgctagagagcactcattccaagaatgcc 84 ||||||| ||||||| | |||||||| |||| ||||||| ||| |||| | ||| | | Sbjct: 2013 atgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggac 2072 Query: 85 actcttgaggcagagaaagaaatgctatcaaaagctctcgatgaacaaacaaaactgaca 144 |||||||| ||||||||| ||||| ||||||| ||||| | ||| ||| || | ||| Sbjct: 2073 actcttgaagcagagaaaaaaatgttatcaaaggctcttgctgagcaacagaagatcaca 2132 Query: 145 accgaggctcaagagaactgcgaggatgctcagaatcttatcacgaggcttcagacagaa 204 || || ||||| || ||| ||||||||||||||||||||| | ||||||||||| || Sbjct: 2133 actgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgag 2192 Query: 205 agggagacttttgaaatgaggtctaggcacctcgaagaggaactggcgttagcgaagggt 264 | ||||| ||||||||||||| |||| || || |||||||| |||||||||| |||||| Sbjct: 2193 aaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggt 2252 Query: 265 gagatgttgcgtctaagaaggcagattagtgcaagcaaatcccagaaa 312 ||||| ||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 2253 gagatattgcgcctaagaaggcagattagtacaagcagatcacagaaa 2300
>dbj|AK061954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F06, full insert sequence Length = 1411 Score = 167 bits (84), Expect = 5e-38 Identities = 237/288 (82%) Strand = Plus / Plus Query: 25 atgaacacgagtgcactgtcactatctaaggcgctagagagcactcattccaagaatgcc 84 ||||||| ||||||| | |||||||| |||| ||||||| ||| |||| | ||| | | Sbjct: 781 atgaacaggagtgcattatcactatcaaaggagctagaggaaactaattctaggaaggac 840 Query: 85 actcttgaggcagagaaagaaatgctatcaaaagctctcgatgaacaaacaaaactgaca 144 |||||||| ||||||||| ||||| ||||||| ||||| | ||| ||| || | ||| Sbjct: 841 actcttgaagcagagaaaaaaatgttatcaaaggctcttgctgagcaacagaagatcaca 900 Query: 145 accgaggctcaagagaactgcgaggatgctcagaatcttatcacgaggcttcagacagaa 204 || || ||||| || ||| ||||||||||||||||||||| | ||||||||||| || Sbjct: 901 actgaagctcatgaaaacactgaggatgctcagaatcttatctctaggcttcagactgag 960 Query: 205 agggagacttttgaaatgaggtctaggcacctcgaagaggaactggcgttagcgaagggt 264 | ||||| ||||||||||||| |||| || || |||||||| |||||||||| |||||| Sbjct: 961 aaggagagttttgaaatgagggctagacatcttgaagaggagttggcgttagcaaagggt 1020 Query: 265 gagatgttgcgtctaagaaggcagattagtgcaagcaaatcccagaaa 312 ||||| ||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 1021 gagatattgcgcctaagaaggcagattagtacaagcagatcacagaaa 1068
>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete sequence Length = 199646 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 cagaaagggagacttttgaaa 220 ||||||||||||||||||||| Sbjct: 60133 cagaaagggagacttttgaaa 60113
>ref|XM_776297.1| PREDICTED: Strongylocentrotus purpuratus similar to sorting nexin 14 (LOC575935), mRNA Length = 1110 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 cagagaaagaaatgctatcaa 115 ||||||||||||||||||||| Sbjct: 497 cagagaaagaaatgctatcaa 517
>gb|AY133429.1| Uncultured bacterium clone BB2_173 16S ribosomal RNA gene, partial sequence Length = 1013 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 gcaagcaaatcccagaaaaca 315 ||||||||||||||||||||| Sbjct: 761 gcaagcaaatcccagaaaaca 781
>gb|AC004253.2| Homo sapiens chromosome 17, clone CTC-542B22, complete sequence Length = 130724 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 aaccgaggctcaagagaactg 164 ||||||||||||||||||||| Sbjct: 77681 aaccgaggctcaagagaactg 77701
>ref|XM_476070.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1971 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gaggatgctcagaatcttat 185 |||||||||||||||||||| Sbjct: 1672 gaggatgctcagaatcttat 1691
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaaagctctcgatgaacaaa 133 |||||||||||||||||||| Sbjct: 345520 aaaagctctcgatgaacaaa 345501
>gb|AY449629.1| Gnetum urens voucher Prevost 4094 (MO) maturase K gene, complete cds; chloroplast Length = 1869 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tatcaaaagctctcgatgaacaaa 133 ||||||||||||| |||||||||| Sbjct: 605 tatcaaaagctctggatgaacaaa 582
>gb|AY449628.1| Gnetum woodsonianum voucher Won 513 (MO) nonfunctional maturase K gene, complete sequence; and tRNA-Lys gene, partial sequence; chloroplast Length = 1967 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tatcaaaagctctcgatgaacaaa 133 ||||||||||||| |||||||||| Sbjct: 686 tatcaaaagctctggatgaacaaa 663
>gb|AY449622.1| Gnetum nodiflorum voucher Gillespie 4246 (US) maturase K gene, complete cds; chloroplast Length = 1854 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tatcaaaagctctcgatgaacaaa 133 ||||||||||||| |||||||||| Sbjct: 592 tatcaaaagctctggatgaacaaa 569
>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence Length = 207367 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 caaaagctctcgatgaacaa 132 |||||||||||||||||||| Sbjct: 108738 caaaagctctcgatgaacaa 108757
>gb|AF419672.1| Uncultured bacterium a2b032 16S ribosomal RNA gene, partial sequence Length = 1481 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gcaagcaaatcccagaaaac 314 |||||||||||||||||||| Sbjct: 1240 gcaagcaaatcccagaaaac 1259
>gb|AC144408.3| Mus musculus BAC clone RP24-326P8 from chromosome 16, complete sequence Length = 167601 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 aaggctaggagaggaaaagg 530 |||||||||||||||||||| Sbjct: 22127 aaggctaggagaggaaaagg 22108
>ref|XM_566577.1| Cryptococcus neoformans var. neoformans JEC21 U1 snRNP 70K protein (short form) (CNA01270) partial mRNA Length = 1736 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aaaagctctcgatgaacaaa 133 |||||||||||||||||||| Sbjct: 241 aaaagctctcgatgaacaaa 260
>gb|AC126053.3| Mus musculus BAC clone RP23-280L21 from chromosome 16, complete sequence Length = 217131 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 aaggctaggagaggaaaagg 530 |||||||||||||||||||| Sbjct: 33313 aaggctaggagaggaaaagg 33332
>gb|AC114818.4| Mus musculus BAC clone RP23-47O11 from 8, complete sequence Length = 100405 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 agacagaaagggagactttt 216 |||||||||||||||||||| Sbjct: 47105 agacagaaagggagactttt 47124
>gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, complete sequence Length = 223130 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 agccatcttcctttcatttt 592 |||||||||||||||||||| Sbjct: 91631 agccatcttcctttcatttt 91650
>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence Length = 197144 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aaaccagcactgctcccaga 366 |||||||||||||||||||| Sbjct: 172248 aaaccagcactgctcccaga 172267
>emb|AL354694.18| Human DNA sequence from clone RP11-77E14 on chromosome 9 Contains a novel gene, complete sequence Length = 153324 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 gaggcagagaaagaaatgctatca 114 ||||||||| |||||||||||||| Sbjct: 108459 gaggcagagcaagaaatgctatca 108482
>emb|AL160290.15| Human DNA sequence from clone RP11-338O1 on chromosome 10 Contains a novel gene and the 5' end of a novel gene, complete sequence Length = 201397 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 cccagaacaagtgcatccacagaa 348 ||||||||||||||||||| |||| Sbjct: 167233 cccagaacaagtgcatccatagaa 167210
>gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, complete sequence Length = 187070 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 agacagaaagggagactttt 216 |||||||||||||||||||| Sbjct: 37897 agacagaaagggagactttt 37916
>emb|AL669839.13| Mouse DNA sequence from clone RP23-171P1 on chromosome 11 Contains part of the Slit 3 gene for slit homolog 3 (Drosophila), complete sequence Length = 169097 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 agaaagggagacttttgaaa 220 |||||||||||||||||||| Sbjct: 130731 agaaagggagacttttgaaa 130750
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaggatgctcagaatcttat 185 |||||||||||||||||||| Sbjct: 142624 gaggatgctcagaatcttat 142605
>gb|AC164165.2| Mus musculus BAC clone RP23-145F16 from chromosome 16, complete sequence Length = 214546 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 aaggctaggagaggaaaagg 530 |||||||||||||||||||| Sbjct: 16672 aaggctaggagaggaaaagg 16653
>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence Length = 201550 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 agccatcttcctttcatttt 592 |||||||||||||||||||| Sbjct: 92011 agccatcttcctttcatttt 91992
>gb|DQ416321.1| Uncultured bacterium clone s2uc26 16S ribosomal RNA gene, partial sequence Length = 605 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gcaagcaaatcccagaaaac 314 |||||||||||||||||||| Sbjct: 422 gcaagcaaatcccagaaaac 441
>emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in linkage group 25, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctgtcactatctaaggcgct 59 |||||||||||||||||||| Sbjct: 94982 ctgtcactatctaaggcgct 94963
>dbj|AK124176.1| Homo sapiens cDNA FLJ42182 fis, clone THYMU2031847 Length = 2475 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 aaaccagcactgctcccaga 366 |||||||||||||||||||| Sbjct: 1263 aaaccagcactgctcccaga 1244
>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence Length = 145356 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 agaacaagtgttgccacagagacc 423 ||||||||||||| |||||||||| Sbjct: 140799 agaacaagtgttgtcacagagacc 140776
>gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11, complete sequence Length = 163908 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 agaacaagtgttgccacagagacc 423 ||||||||||||| |||||||||| Sbjct: 54747 agaacaagtgttgtcacagagacc 54724
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaggatgctcagaatcttat 185 |||||||||||||||||||| Sbjct: 4774619 gaggatgctcagaatcttat 4774600
>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence Length = 201440 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 caaaagctctcgatgaacaa 132 |||||||||||||||||||| Sbjct: 61809 caaaagctctcgatgaacaa 61828
>gb|AC026770.6|AC026770 Homo sapiens chromosome 15 clone CTD-2308G16 map 15q21, complete sequence Length = 94718 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 aagggagacttttgaaatga 223 |||||||||||||||||||| Sbjct: 17645 aagggagacttttgaaatga 17626
>gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196753 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gaggcagagaaagaaatgctatca 114 ||||||||| |||||||||||||| Sbjct: 189484 gaggcagagcaagaaatgctatca 189461
>gb|AF351227.1| Uncultured beta proteobacterium clone 4-4 16S ribosomal RNA gene, partial sequence Length = 1410 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gcaagcaaatcccagaaaac 314 |||||||||||||||||||| Sbjct: 1197 gcaagcaaatcccagaaaac 1216
>gb|AF351226.1| Uncultured gamma proteobacterium clone 4-3 16S ribosomal RNA gene, partial sequence Length = 1387 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gcaagcaaatcccagaaaac 314 |||||||||||||||||||| Sbjct: 1183 gcaagcaaatcccagaaaac 1202
>gb|AY492029.1| Gnetum leyboldii maturase K (matK) gene, partial cds; chloroplast Length = 1164 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tatcaaaagctctcgatgaacaaa 133 ||||||||||||| |||||||||| Sbjct: 450 tatcaaaagctctggatgaacaaa 427
>emb|BX294900.1|CNS09SB9 Uncultured planctomycete partial 16S rRNA gene clone CY0ARA055E04 of environmental sample of uncultured planctomycete obtained from anaerobic digester from France, Evry municipal wastewater treatment plant Length = 1278 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gcaagcaaatcccagaaaac 314 |||||||||||||||||||| Sbjct: 1161 gcaagcaaatcccagaaaac 1180
>emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chromosome 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cagaaaccagcactgctccc 363 |||||||||||||||||||| Sbjct: 70256 cagaaaccagcactgctccc 70275
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaggatgctcagaatcttat 185 |||||||||||||||||||| Sbjct: 47027 gaggatgctcagaatcttat 47008
>dbj|AB045320.1| Homo sapiens genomic DNA, chromosome 10q25-q26, clone:423L12, complete sequence Length = 91826 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 cccagaacaagtgcatccacagaa 348 ||||||||||||||||||| |||| Sbjct: 25609 cccagaacaagtgcatccatagaa 25632 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,665,925 Number of Sequences: 3902068 Number of extensions: 5665925 Number of successful extensions: 107533 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107384 Number of HSP's gapped (non-prelim): 149 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
